From 9b619fe8eebf9b7e2b9ead891eeb566d7c9b2f06 Mon Sep 17 00:00:00 2001 From: MaxUlysse Date: Fri, 8 Jul 2022 09:16:30 +0200 Subject: [PATCH 1/2] remove WARN message about no process matching config selector --- conf/modules.config | 2 ++ 1 file changed, 2 insertions(+) diff --git a/conf/modules.config b/conf/modules.config index 4a4dea87fe..f2feb006d4 100644 --- a/conf/modules.config +++ b/conf/modules.config @@ -1191,7 +1191,9 @@ process{ pattern: "*{gz,gz.tbi}" ] } + } + if (params.tools && (params.tools.contains('snpeff') || params.tools.contains('merge'))) { withName: 'NFCORE_SAREK:SAREK:ANNOTATE:ANNOTATION_SNPEFF:TABIX_BGZIPTABIX' { publishDir = [ mode: params.publish_dir_mode, From e0585de408555807d62c0f4a635baa423ba474c9 Mon Sep 17 00:00:00 2001 From: MaxUlysse Date: Fri, 8 Jul 2022 09:29:13 +0200 Subject: [PATCH 2/2] update CHANGELOG [skip CI] --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 3f71de6ff3..7e27813f10 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -108,7 +108,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [#581](https://github.com/nf-core/sarek/pull/581) - `TIDDIT` is back - [#590](https://github.com/nf-core/sarek/pull/590) - Fix empty folders during scatter/gather - [#592](https://github.com/nf-core/sarek/pull/592) - Fix optional resources for Mutect2, GetPileupSummaries, and HaplotypeCaller: issue [#299](https://github.com/nf-core/sarek/issues/299), [#359](https://github.com/nf-core/sarek/issues/359), [#367](https://github.com/nf-core/sarek/issues/367) -- [#598](https://github.com/nf-core/sarek/pull/598), [#614](https://github.com/nf-core/sarek/pull/614) - Remove WARNING message for config selector not matching +- [#598](https://github.com/nf-core/sarek/pull/598), [#614](https://github.com/nf-core/sarek/pull/614), [#626](https://github.com/nf-core/sarek/pull/626) - Remove WARNING message for config selector not matching - [#599](https://github.com/nf-core/sarek/pull/599) - Add checks for correct data type for `params.step` - [#599](https://github.com/nf-core/sarek/pull/599) - Add checks for no empty `--tools` with `--step variant_calling` or `--step annotation` - [#600](https://github.com/nf-core/sarek/pull/600) - Remove `nf-core lint` warnings