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Sarek 2.6 - Piellorieppe

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@maxulysse maxulysse released this 24 May 09:40
· 6536 commits to master since this release
75fe254
  • Add GATK Spark possibilities (#76)
  • Add CNVkit (#153)
  • Add MSIsensor (#163)
  • Improve support for minimal genome (only fasta)
  • Output directory DuplicateMarked is now replaced by DuplicatesMarked
  • Output directory controlFREEC is now replaced by Control-FREEC
  • Fix annotation CI testing with snpEff and VEP (#143)
  • Fix --no_intervals for Mutect2 (#146)
  • Add --skip_markduplicates (#205)

See full CHANGELOG, for more information