Sarek 2.6 - Piellorieppe
- Add
GATK Spark
possibilities (#76) - Add
CNVkit
(#153) - Add
MSIsensor
(#163) - Improve support for minimal genome (only fasta)
- Output directory
DuplicateMarked
is now replaced byDuplicatesMarked
- Output directory
controlFREEC
is now replaced byControl-FREEC
- Fix annotation CI testing with
snpEff
andVEP
(#143) - Fix
--no_intervals
forMutect2
(#146) - Add
--skip_markduplicates
(#205)
See full CHANGELOG, for more information