diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 796e00fc..ac5e5f11 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -35,13 +35,13 @@ jobs: - name: Build new docker image if: env.MATCHED_FILES - run: docker build --no-cache . -t nfcore/scrnaseq:dev + run: docker build --no-cache . -t nfcore/scrnaseq:1.1.0 - name: Pull docker image if: ${{ !env.MATCHED_FILES }} run: | docker pull nfcore/scrnaseq:dev - docker tag nfcore/scrnaseq:dev nfcore/scrnaseq:dev + docker tag nfcore/scrnaseq:dev nfcore/scrnaseq:1.1.0 - name: Install Nextflow env: diff --git a/CHANGELOG.md b/CHANGELOG.md index 20851a4f..7bbef2b1 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,11 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## v1.1.0 - 2021-03-24 "Olive Mercury Corgi" + +* Template update with latest nf-core/tools v1.13.2 +* Parameters JSON Schema added [#42](https://github.com/nf-core/scrnaseq/issues/42) + ## V1.0.1dev * [25](https://github.com/nf-core/scrnaseq/issues/25) Fix small documentation error with wrong parameter for txp2gene diff --git a/Dockerfile b/Dockerfile index 961a298f..6834f611 100644 --- a/Dockerfile +++ b/Dockerfile @@ -11,7 +11,7 @@ RUN conda env create --quiet -f /environment.yml && conda clean -a RUN apt-get update && apt-get install -y libtbb2 pandoc-citeproc # Add conda installation dir to PATH (instead of doing 'conda activate') -ENV PATH /opt/conda/envs/nf-core-scrnaseq-1.0.1dev/bin:$PATH +ENV PATH /opt/conda/envs/nf-core-scrnaseq-1.1.0/bin:$PATH # Dump the details of the installed packages to a file for posterity -RUN conda env export --name nf-core-scrnaseq-1.0.1dev > nf-core-scrnaseq-1.0.1dev.yml +RUN conda env export --name nf-core-scrnaseq-1.1.0 > nf-core-scrnaseq-1.1.0.yml diff --git a/environment.yml b/environment.yml index d8e3aaa0..5cc80727 100644 --- a/environment.yml +++ b/environment.yml @@ -1,6 +1,6 @@ # You can use this file to create a conda environment for this pipeline: # conda env create -f environment.yml -name: nf-core-scrnaseq-1.0.1dev +name: nf-core-scrnaseq-1.1.0 channels: - conda-forge - bioconda diff --git a/nextflow.config b/nextflow.config index e27db61d..838af2b3 100644 --- a/nextflow.config +++ b/nextflow.config @@ -68,7 +68,7 @@ params { // Container slug. Stable releases should specify release tag! // Developmental code should specify :dev -process.container = 'nfcore/scrnaseq:dev' +process.container = 'nfcore/scrnaseq:1.1.0' // Load base.config by default for all pipelines includeConfig 'conf/base.config' @@ -172,7 +172,7 @@ manifest { description = 'Pipeline for processing of 10xGenomics single cell rnaseq data' mainScript = 'main.nf' nextflowVersion = '>=20.10.0' - version = '1.0.1dev' + version = '1.1.0' } // Function to ensure that resource requirements don't go beyond