From 5b3796fe800a039ca38678f5e0c00372bde564b9 Mon Sep 17 00:00:00 2001 From: Gregor Sturm Date: Tue, 16 Apr 2024 14:48:36 +0200 Subject: [PATCH 1/3] bump version and update changelog --- CHANGELOG.md | 5 +++-- assets/multiqc_config.yml | 4 ++-- nextflow.config | 2 +- 3 files changed, 6 insertions(+), 5 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 88d56ee9..de6ff058 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,8 +3,9 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## v2.6.0dev - [date] +## v2.6.0 - 2024-04-16 +- Update cellranger to v8.0.0 ([#317](https://github.com/nf-core/scrnaseq/pull/317)) - Change from pytests to nf-test ([#291](https://github.com/nf-core/scrnaseq/pull/291)) - Update template to v2.13.1 ([#309](https://github.com/nf-core/scrnaseq/pull/309)) - Update to kallisto|bustools v0.28.2 ([#294](https://github.com/nf-core/scrnaseq/pull/294)) @@ -12,7 +13,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - Add new emptydrops calling module ([#301](https://github.com/nf-core/scrnaseq/pull/301)) - Update cellranger modules to latest version ([[#316](https://github.com/nf-core/scrnaseq/issues/316)]) -## v2.5.1 +## v2.5.1 - 2024-01-23 - Template update to v2.12 ([#298](https://github.com/nf-core/scrnaseq/pull/298)). - Fix that cellranger workflow couldn't be run and enable CI for this workflow ([#288](https://github.com/nf-core/scrnaseq/pull/288)). diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml index 584bae69..adfa48ba 100644 --- a/assets/multiqc_config.yml +++ b/assets/multiqc_config.yml @@ -1,7 +1,7 @@ report_comment: > - This report has been generated by the nf-core/scrnaseq + This report has been generated by the nf-core/scrnaseq analysis pipeline. For information about how to interpret these results, please see the - documentation. + documentation. report_section_order: "nf-core-scrnaseq-methods-description": order: -1000 diff --git a/nextflow.config b/nextflow.config index 8fefe42c..91c9c617 100644 --- a/nextflow.config +++ b/nextflow.config @@ -282,7 +282,7 @@ manifest { description = """Pipeline for processing 10x Genomics single cell rnaseq data""" mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' - version = '2.6.0dev' + version = '2.6.0' doi = '10.5281/zenodo.3568187' } From c1e98b3ce7f406dc049aeadb56e28aaa43a61116 Mon Sep 17 00:00:00 2001 From: Gregor Sturm Date: Thu, 18 Apr 2024 08:05:52 +0200 Subject: [PATCH 2/3] Update download_pipeline.yml --- .github/workflows/download_pipeline.yml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.github/workflows/download_pipeline.yml b/.github/workflows/download_pipeline.yml index 08622fd5..e549d01b 100644 --- a/.github/workflows/download_pipeline.yml +++ b/.github/workflows/download_pipeline.yml @@ -27,6 +27,9 @@ jobs: download: runs-on: ubuntu-latest steps: + - name: Disk space cleanup + uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1 + - name: Install Nextflow uses: nf-core/setup-nextflow@v1 From 4efe296b0838f049bb03de22316c563b86a5cec2 Mon Sep 17 00:00:00 2001 From: nf-core-bot Date: Thu, 18 Apr 2024 06:08:14 +0000 Subject: [PATCH 3/3] [automated] Fix linting with Prettier --- .github/workflows/download_pipeline.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/download_pipeline.yml b/.github/workflows/download_pipeline.yml index e549d01b..e810c84b 100644 --- a/.github/workflows/download_pipeline.yml +++ b/.github/workflows/download_pipeline.yml @@ -29,7 +29,7 @@ jobs: steps: - name: Disk space cleanup uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1 - + - name: Install Nextflow uses: nf-core/setup-nextflow@v1