From 126d1e398485fc127d2502b7e8ead8d779c694b9 Mon Sep 17 00:00:00 2001
From: Alfred Kedhammar <89784800+kedhammar@users.noreply.github.com>
Date: Wed, 18 Dec 2024 14:10:30 +0100
Subject: [PATCH] Bugfix

The file extensions were a bit wonky. Likely due to hasty copy-pasty :)
---
 modules/nf-core/fastqscreen/fastqscreen/main.nf | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/modules/nf-core/fastqscreen/fastqscreen/main.nf b/modules/nf-core/fastqscreen/fastqscreen/main.nf
index 9df8e27..ee6eeb2 100644
--- a/modules/nf-core/fastqscreen/fastqscreen/main.nf
+++ b/modules/nf-core/fastqscreen/fastqscreen/main.nf
@@ -30,11 +30,11 @@ process FASTQSCREEN_FASTQSCREEN {
             "mv ${reads[0].simpleName}_screen.txt ${prefix}_screen.txt" : 
             reads.collect { "mv ${it.simpleName}_screen.txt ${prefix}_${it.simpleName}_screen.txt" }.join(' && ')
     def mv_html_cmd   = (num_reads == 1) ? 
-            "mv ${reads[0].simpleName}_screen.html ${prefix}_1_screen.html" : 
-            reads.collect { "mv ${it.simpleName}_screen.txt ${prefix}_${it.simpleName}_screen.txt" }.join(' && ')
+            "mv ${reads[0].simpleName}_screen.html ${prefix}_screen.html" : 
+            reads.collect { "mv ${it.simpleName}_screen.html ${prefix}_${it.simpleName}_screen.html" }.join(' && ')
     def mv_png_cmd    = (num_reads == 1) ? 
-            "mv ${reads[0].simpleName}_screen.png ${prefix}_1_screen.png" : 
-            reads.collect { "mv ${it.simpleName}_screen.txt ${prefix}_${it.simpleName}_screen.txt" }.join(' && ')
+            "mv ${reads[0].simpleName}_screen.png ${prefix}_screen.png" : 
+            reads.collect { "mv ${it.simpleName}_screen.png ${prefix}_${it.simpleName}_screen.png" }.join(' && ')
     """
     echo '${config_content}' > fastq_screen.conf