From 3f44849d8fa79b1ee9edd4959a7ba764b702d662 Mon Sep 17 00:00:00 2001 From: Anne Marie Noronha Date: Thu, 6 Apr 2023 13:42:11 -0400 Subject: [PATCH] fix MakeTestWorkflow CI tests again --- .github/workflows/create-lint-wf.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/create-lint-wf.yml b/.github/workflows/create-lint-wf.yml index 3fb520189d..a5b69650bf 100644 --- a/.github/workflows/create-lint-wf.yml +++ b/.github/workflows/create-lint-wf.yml @@ -115,6 +115,7 @@ jobs: - name: nf-core modules remove run: | + find nf-core-testpipeline/workflows/ -type f -exec sed -i '/^include /d' {} \; nf-core --log-file log.txt modules remove fastqc --dir nf-core-testpipeline/ nf-core --log-file log.txt modules remove multiqc --dir nf-core-testpipeline/ nf-core --log-file log.txt modules remove custom/dumpsoftwareversions --dir nf-core-testpipeline/