From b69ffea293ba0569f34d151775be312ff9f3465e Mon Sep 17 00:00:00 2001 From: Erik Danielsson Date: Fri, 16 Jul 2021 14:07:42 +0200 Subject: [PATCH 1/2] Change installation reference from 'nf-co.re' to Nextflow page --- nf_core/bump_version.py | 9 ++++++--- nf_core/pipeline-template/README.md | 2 +- 2 files changed, 7 insertions(+), 4 deletions(-) diff --git a/nf_core/bump_version.py b/nf_core/bump_version.py index 1563c3ec9..29f3a39f9 100644 --- a/nf_core/bump_version.py +++ b/nf_core/bump_version.py @@ -97,11 +97,14 @@ def bump_nextflow_version(pipeline_obj, new_version): r"nextflow%20DSL2-%E2%89%A5{}-23aa62.svg".format(current_version.replace(".", r"\.")), "nextflow%20DSL2-%E2%89%A5{}-23aa62.svg".format(new_version), ), + ( + # Replace links to 'nf-co.re' installation page with links to Nextflow installation page + r"https://nf-co.re/usage/installation", + "https://www.nextflow.io/docs/latest/getstarted.html#installation", + ), ( # example: 1. Install [`Nextflow`](https://www.nextflow.io/docs/latest/getstarted.html#installation) (`>=20.04.0`) - r"1\.\s*Install\s*\[`Nextflow`\]\(https://www.nextflow.io/docs/latest/getstarted.html#installation\)\s*\(`>={}`\)".format( - current_version.replace(".", r"\.") - ), + r"1\.\s*Install\s*\[`Nextflow`\]\(y\)\s*\(`>={}`\)".format(current_version.replace(".", r"\.")), "1. Install [`Nextflow`](https://www.nextflow.io/docs/latest/getstarted.html#installation) (`>={}`)".format( new_version ), diff --git a/nf_core/pipeline-template/README.md b/nf_core/pipeline-template/README.md index c8763e132..c502f2ea5 100644 --- a/nf_core/pipeline-template/README.md +++ b/nf_core/pipeline-template/README.md @@ -33,7 +33,7 @@ On release, automated continuous integration tests run the pipeline on a full-si ## Quick Start -1. Install [`Nextflow`](https://nf-co.re/usage/installation) (`>=21.04.0`) +1. Install [`Nextflow`](https://www.nextflow.io/docs/latest/getstarted.html#installation) (`>=21.04.0`) 2. Install any of [`Docker`](https://docs.docker.com/engine/installation/), [`Singularity`](https://www.sylabs.io/guides/3.0/user-guide/), [`Podman`](https://podman.io/), [`Shifter`](https://nersc.gitlab.io/development/shifter/how-to-use/) or [`Charliecloud`](https://hpc.github.io/charliecloud/) for full pipeline reproducibility _(please only use [`Conda`](https://conda.io/miniconda.html) as a last resort; see [docs](https://nf-co.re/usage/configuration#basic-configuration-profiles))_ From 59d2d801ee52cc15e4c5f4d4e66bc492ca5c8629 Mon Sep 17 00:00:00 2001 From: Erik Danielsson Date: Fri, 16 Jul 2021 14:13:36 +0200 Subject: [PATCH 2/2] Update CHANGELOG.md --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 79ff29a17..83d12b0a8 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,6 +4,8 @@ ### Template +* Update Nextflow installation link in pipeline template ([#1201](https://github.com/nf-core/tools/issues/1201)) + ### General ### Modules