diff --git a/nf_core/gitpod/gitpod.Dockerfile b/nf_core/gitpod/gitpod.Dockerfile index 5fce2f055b..47b27bb514 100644 --- a/nf_core/gitpod/gitpod.Dockerfile +++ b/nf_core/gitpod/gitpod.Dockerfile @@ -3,6 +3,7 @@ FROM gitpod/workspace-base USER root # Install util tools. +# software-properties-common is needed to add ppa support for Apptainer installation RUN apt-get update --quiet && \ apt-get install --quiet --yes \ apt-transport-https \ @@ -13,7 +14,13 @@ RUN apt-get update --quiet && \ wget \ curl \ tree \ - graphviz + graphviz \ + software-properties-common + +# Install Apptainer (Singularity) +RUN add-apt-repository -y ppa:apptainer/ppa && \ + apt-get update --quiet && \ + apt install -y apptainer # Install Conda RUN wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh && \