diff --git a/tests/pipelines/__snapshots__/test_create_app.ambr b/tests/pipelines/__snapshots__/test_create_app.ambr
index 3ed8349ee..af8808066 100644
--- a/tests/pipelines/__snapshots__/test_create_app.ambr
+++ b/tests/pipelines/__snapshots__/test_create_app.ambr
@@ -2233,255 +2233,255 @@
font-weight: 700;
}
- .terminal-3458551717-matrix {
+ .terminal-1373392807-matrix {
font-family: Fira Code, monospace;
font-size: 20px;
line-height: 24.4px;
font-variant-east-asian: full-width;
}
- .terminal-3458551717-title {
+ .terminal-1373392807-title {
font-size: 18px;
font-weight: bold;
font-family: arial;
}
- .terminal-3458551717-r1 { fill: #c5c8c6 }
- .terminal-3458551717-r2 { fill: #e3e3e3 }
- .terminal-3458551717-r3 { fill: #989898 }
- .terminal-3458551717-r4 { fill: #e1e1e1 }
- .terminal-3458551717-r5 { fill: #4ebf71;font-weight: bold }
- .terminal-3458551717-r6 { fill: #1e1e1e }
- .terminal-3458551717-r7 { fill: #507bb3 }
- .terminal-3458551717-r8 { fill: #e2e2e2 }
- .terminal-3458551717-r9 { fill: #808080 }
- .terminal-3458551717-r10 { fill: #dde6ed;font-weight: bold }
- .terminal-3458551717-r11 { fill: #001541 }
- .terminal-3458551717-r12 { fill: #14191f }
- .terminal-3458551717-r13 { fill: #454a50 }
- .terminal-3458551717-r14 { fill: #7ae998 }
- .terminal-3458551717-r15 { fill: #e2e3e3;font-weight: bold }
- .terminal-3458551717-r16 { fill: #0a180e;font-weight: bold }
- .terminal-3458551717-r17 { fill: #000000 }
- .terminal-3458551717-r18 { fill: #008139 }
- .terminal-3458551717-r19 { fill: #fea62b;font-weight: bold }
- .terminal-3458551717-r20 { fill: #a7a9ab }
- .terminal-3458551717-r21 { fill: #e2e3e3 }
+ .terminal-1373392807-r1 { fill: #c5c8c6 }
+ .terminal-1373392807-r2 { fill: #e3e3e3 }
+ .terminal-1373392807-r3 { fill: #989898 }
+ .terminal-1373392807-r4 { fill: #e1e1e1 }
+ .terminal-1373392807-r5 { fill: #4ebf71;font-weight: bold }
+ .terminal-1373392807-r6 { fill: #1e1e1e }
+ .terminal-1373392807-r7 { fill: #507bb3 }
+ .terminal-1373392807-r8 { fill: #e2e2e2 }
+ .terminal-1373392807-r9 { fill: #808080 }
+ .terminal-1373392807-r10 { fill: #dde6ed;font-weight: bold }
+ .terminal-1373392807-r11 { fill: #001541 }
+ .terminal-1373392807-r12 { fill: #14191f }
+ .terminal-1373392807-r13 { fill: #454a50 }
+ .terminal-1373392807-r14 { fill: #7ae998 }
+ .terminal-1373392807-r15 { fill: #e2e3e3;font-weight: bold }
+ .terminal-1373392807-r16 { fill: #0a180e;font-weight: bold }
+ .terminal-1373392807-r17 { fill: #000000 }
+ .terminal-1373392807-r18 { fill: #008139 }
+ .terminal-1373392807-r19 { fill: #fea62b;font-weight: bold }
+ .terminal-1373392807-r20 { fill: #a7a9ab }
+ .terminal-1373392807-r21 { fill: #e2e3e3 }
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- nf-core create
+ nf-core create
-
+
-
- ⭘nf-core create — Create a new pipeline with the nf-core pipeline template
-
-
- Template features
-
-
- ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
- ▊▎ Add Github CI testsThe pipeline will Show help
- ▊▁▁▁▁▁▁▁▁▎include several GitHub▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
- actions for Continuous
- Integration (CI)
- testing
-
- ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
- ▊▎ Use reference genomesThe pipeline will be Show help
- ▊▁▁▁▁▁▁▁▁▎configured to use a ▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
- copy of the most
- common reference
- genome files from ▂▂
- iGenomes
-
- ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
- ▊▎ Add Github badgesThe README.md file of Show help
- ▊▁▁▁▁▁▁▁▁▎the pipeline will ▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
- include GitHub badges
-
- ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
- ▊▎ Add configuration The pipeline will Show help
- ▊▁▁▁▁▁▁▁▁▎ filesinclude configuration ▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
- profiles containing
- custom parameters
- requried to run
- nf-core pipelines at
- different institutions
-
- ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
- ▊▎ Use code lintersThe pipeline will Show help
- ▊▁▁▁▁▁▁▁▁▎include code linters ▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
- and CI tests to lint
- your code: pre-commit,
- editor-config and
- prettier.
-
- ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
- ▊▎ Include citationsInclude pipeline tools Show help
- ▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
- Back Continue
- ▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
-
- d Toggle dark mode q Quit
+
+ ⭘nf-core create — Create a new pipeline with the nf-core pipeline template
+
+
+ Template features
+
+
+ ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
+ ▊▎ Add Github CI testsThe pipeline will Show help
+ ▊▁▁▁▁▁▁▁▁▎include several GitHub▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
+ actions for Continuous
+ Integration (CI)
+ testing
+
+ ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
+ ▊▎ Use reference genomesThe pipeline will be Show help
+ ▊▁▁▁▁▁▁▁▁▎configured to use a ▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
+ copy of the most
+ common reference
+ genome files from ▃▃
+ iGenomes
+
+ ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
+ ▊▎ Add Github badgesThe README.md file of Show help
+ ▊▁▁▁▁▁▁▁▁▎the pipeline will ▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
+ include GitHub badges
+
+ ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
+ ▊▎ Add configuration The pipeline will Show help
+ ▊▁▁▁▁▁▁▁▁▎ filesinclude configuration ▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
+ profiles containing
+ custom parameters
+ requried to run
+ nf-core pipelines at
+ different institutions
+
+ ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
+ ▊▎ Use code lintersThe pipeline will Show help
+ ▊▁▁▁▁▁▁▁▁▎include code linters ▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
+ and CI tests to lint
+ your code: pre-commit,
+ editor-config and
+ prettier.
+
+ ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
+ ▊▎ Include citationsInclude pipeline tools Show help
+ ▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
+ Back Continue
+ ▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
+
+ d Toggle dark mode q Quit
@@ -2511,254 +2511,254 @@
font-weight: 700;
}
- .terminal-3752496172-matrix {
+ .terminal-3384959394-matrix {
font-family: Fira Code, monospace;
font-size: 20px;
line-height: 24.4px;
font-variant-east-asian: full-width;
}
- .terminal-3752496172-title {
+ .terminal-3384959394-title {
font-size: 18px;
font-weight: bold;
font-family: arial;
}
- .terminal-3752496172-r1 { fill: #c5c8c6 }
- .terminal-3752496172-r2 { fill: #e3e3e3 }
- .terminal-3752496172-r3 { fill: #989898 }
- .terminal-3752496172-r4 { fill: #e1e1e1 }
- .terminal-3752496172-r5 { fill: #4ebf71;font-weight: bold }
- .terminal-3752496172-r6 { fill: #1e1e1e }
- .terminal-3752496172-r7 { fill: #507bb3 }
- .terminal-3752496172-r8 { fill: #e2e2e2 }
- .terminal-3752496172-r9 { fill: #808080 }
- .terminal-3752496172-r10 { fill: #dde6ed;font-weight: bold }
- .terminal-3752496172-r11 { fill: #001541 }
- .terminal-3752496172-r12 { fill: #454a50 }
- .terminal-3752496172-r13 { fill: #7ae998 }
- .terminal-3752496172-r14 { fill: #e2e3e3;font-weight: bold }
- .terminal-3752496172-r15 { fill: #0a180e;font-weight: bold }
- .terminal-3752496172-r16 { fill: #000000 }
- .terminal-3752496172-r17 { fill: #008139 }
- .terminal-3752496172-r18 { fill: #fea62b;font-weight: bold }
- .terminal-3752496172-r19 { fill: #a7a9ab }
- .terminal-3752496172-r20 { fill: #e2e3e3 }
+ .terminal-3384959394-r1 { fill: #c5c8c6 }
+ .terminal-3384959394-r2 { fill: #e3e3e3 }
+ .terminal-3384959394-r3 { fill: #989898 }
+ .terminal-3384959394-r4 { fill: #e1e1e1 }
+ .terminal-3384959394-r5 { fill: #4ebf71;font-weight: bold }
+ .terminal-3384959394-r6 { fill: #1e1e1e }
+ .terminal-3384959394-r7 { fill: #507bb3 }
+ .terminal-3384959394-r8 { fill: #e2e2e2 }
+ .terminal-3384959394-r9 { fill: #808080 }
+ .terminal-3384959394-r10 { fill: #dde6ed;font-weight: bold }
+ .terminal-3384959394-r11 { fill: #001541 }
+ .terminal-3384959394-r12 { fill: #454a50 }
+ .terminal-3384959394-r13 { fill: #7ae998 }
+ .terminal-3384959394-r14 { fill: #e2e3e3;font-weight: bold }
+ .terminal-3384959394-r15 { fill: #0a180e;font-weight: bold }
+ .terminal-3384959394-r16 { fill: #000000 }
+ .terminal-3384959394-r17 { fill: #008139 }
+ .terminal-3384959394-r18 { fill: #fea62b;font-weight: bold }
+ .terminal-3384959394-r19 { fill: #a7a9ab }
+ .terminal-3384959394-r20 { fill: #e2e3e3 }
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- nf-core create
+ nf-core create
-
-
-
- ⭘nf-core create — Create a new pipeline with the nf-core pipeline template
-
-
- Template features
-
-
- ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
- ▊▎ Use reference genomesThe pipeline will be Show help
- ▊▁▁▁▁▁▁▁▁▎configured to use a ▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
- copy of the most common
- reference genome files
- from iGenomes
-
- ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
- ▊▎ Use multiqcThe pipeline will Show help
- ▊▁▁▁▁▁▁▁▁▎include the MultiQC ▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
- module which generates
- an HTML report for
- quality control.
-
- ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
- ▊▎ Use fastqcThe pipeline will Show help
- ▊▁▁▁▁▁▁▁▁▎include the FastQC ▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
- module which performs
- quality control
- analysis of input FASTQ
- files.
-
- ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
- ▊▎ Use nf-schemaUse nf-schema for this Show help
- ▊▁▁▁▁▁▁▁▁▎pipeline.▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
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- Back Continue
- ▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
-
- d Toggle dark mode q Quit
+
+
+
+ ⭘nf-core create — Create a new pipeline with the nf-core pipeline template
+
+
+ Template features
+
+
+ ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
+ ▊▎ Use reference genomesThe pipeline will be Show help
+ ▊▁▁▁▁▁▁▁▁▎configured to use a ▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
+ copy of the most common
+ reference genome files
+ from iGenomes
+
+ ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
+ ▊▎ Use multiqcThe pipeline will Show help
+ ▊▁▁▁▁▁▁▁▁▎include the MultiQC ▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
+ module which generates
+ an HTML report for
+ quality control.
+
+ ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
+ ▊▎ Use fastqcThe pipeline will Show help
+ ▊▁▁▁▁▁▁▁▁▎include the FastQC ▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
+ module which performs
+ quality control
+ analysis of input FASTQ
+ files.
+
+ ▊▔▔▔▔▔▔▔▔▎▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
+ ▊▎ Use nf-schemaUse the nf-schema Show help
+ ▊▁▁▁▁▁▁▁▁▎Nextflow plugin for ▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
+ this pipeline.
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+ ▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔
+ Back Continue
+ ▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁
+
+ d Toggle dark mode q Quit