From 1a7dc71fbd8b2d9fd56df48832c04793dbe08f02 Mon Sep 17 00:00:00 2001 From: fabianegli Date: Wed, 1 Jun 2022 16:42:04 +0200 Subject: [PATCH 1/4] pytest is a general requirement --- requirements-dev.txt | 1 - requirements.txt | 1 + 2 files changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements-dev.txt b/requirements-dev.txt index 7a38e2e51b..28c97723b7 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -1,4 +1,3 @@ -pytest pytest-datafiles pytest-cov mock diff --git a/requirements.txt b/requirements.txt index 798ed3470b..d8ae663a71 100644 --- a/requirements.txt +++ b/requirements.txt @@ -6,6 +6,7 @@ jsonschema>=3.0 markdown>=3.3 packaging prompt_toolkit>=3.0.3 +pytest pytest-workflow pyyaml questionary>=1.8.0 From 36419c0df87277f51d4051fc481f31de8b28f94e Mon Sep 17 00:00:00 2001 From: fabianegli Date: Wed, 1 Jun 2022 16:45:11 +0200 Subject: [PATCH 2/4] specify pytest minimal version requirement --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index d8ae663a71..2fe309fe7a 100644 --- a/requirements.txt +++ b/requirements.txt @@ -6,7 +6,7 @@ jsonschema>=3.0 markdown>=3.3 packaging prompt_toolkit>=3.0.3 -pytest +pytest>=7.0.0 pytest-workflow pyyaml questionary>=1.8.0 From f880e9daea3afeca03d0b85d4a6610ffdb17d3bf Mon Sep 17 00:00:00 2001 From: fabianegli Date: Wed, 1 Jun 2022 16:46:05 +0200 Subject: [PATCH 3/4] specify pytest-workflow minimal version --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index 2fe309fe7a..67ee9f79a3 100644 --- a/requirements.txt +++ b/requirements.txt @@ -7,7 +7,7 @@ markdown>=3.3 packaging prompt_toolkit>=3.0.3 pytest>=7.0.0 -pytest-workflow +pytest-workflow>=1.6.0 pyyaml questionary>=1.8.0 requests From 57bde0f79cb5c7cc8d0bc3f4df5bde8b97911c89 Mon Sep 17 00:00:00 2001 From: fabianegli Date: Wed, 1 Jun 2022 16:54:15 +0200 Subject: [PATCH 4/4] mention pytest and pytest-workflow requirements update --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 5ebed5628f..be73100b9e 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -12,6 +12,8 @@ ### General +- Updated the package requirements to prevent defunct installations of nf-core [#1620](https://github.com/nf-core/tools/pull/1620) + ### Modules - Fix a bug in the regex extracting the version from biocontainers URLs [#1598](https://github.com/nf-core/tools/pull/1598)