From a1e64127b5dfc87bbc5a6195667a81e1728ea8a0 Mon Sep 17 00:00:00 2001 From: mashehu Date: Mon, 5 Dec 2022 11:46:26 +0100 Subject: [PATCH 1/3] add conda channel order to nextflow.config template --- nf_core/pipeline-template/nextflow.config | 1 + 1 file changed, 1 insertion(+) diff --git a/nf_core/pipeline-template/nextflow.config b/nf_core/pipeline-template/nextflow.config index 8ccb08d409..e30cbcd6cb 100644 --- a/nf_core/pipeline-template/nextflow.config +++ b/nf_core/pipeline-template/nextflow.config @@ -91,6 +91,7 @@ profiles { podman.enabled = false shifter.enabled = false charliecloud.enabled = false + channels = ['conda-forge','bioconda','defaults'] } mamba { params.enable_conda = true From a023d6e572d4f1f150ebc6cab85f08ac585b8e0c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Matthias=20H=C3=B6rtenhuber?= Date: Mon, 5 Dec 2022 12:46:41 +0100 Subject: [PATCH 2/3] Update nf_core/pipeline-template/nextflow.config Co-authored-by: Maxime U. Garcia --- nf_core/pipeline-template/nextflow.config | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nf_core/pipeline-template/nextflow.config b/nf_core/pipeline-template/nextflow.config index e30cbcd6cb..e7faeb41c1 100644 --- a/nf_core/pipeline-template/nextflow.config +++ b/nf_core/pipeline-template/nextflow.config @@ -91,7 +91,7 @@ profiles { podman.enabled = false shifter.enabled = false charliecloud.enabled = false - channels = ['conda-forge','bioconda','defaults'] + channels = ['conda-forge', 'bioconda', 'defaults'] } mamba { params.enable_conda = true From df48d77be32c890c83e80031537fe4c2b8ed65ef Mon Sep 17 00:00:00 2001 From: mashehu Date: Tue, 9 Jan 2024 09:38:04 +0100 Subject: [PATCH 3/3] update changelog --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index dc96df408f..ec96e24d54 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -6,6 +6,7 @@ - Add a Github Action Workflow to the pipeline template that tests a successful download with 'nf-core download' ([#2618](https://github.com/nf-core/tools/pull/2618)) - Use `pre-commit` to lint files in GitHub CI ([#2635](https://github.com/nf-core/tools/pull/2635)) +- Add conda channel order to nextflow.config ([#2094](https://github.com/nf-core/tools/pull/2094)) ### Download