From b93e8e0e314725392a1bd522f12c8ecdb71b731c Mon Sep 17 00:00:00 2001 From: "Maxime U. Garcia" Date: Mon, 23 Jan 2023 17:49:37 +0100 Subject: [PATCH 1/3] Add dumpHashes in the debug profile to have all possible hashes in the debug profile --- nf_core/pipeline-template/nextflow.config | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/nf_core/pipeline-template/nextflow.config b/nf_core/pipeline-template/nextflow.config index cc591a54e5..9c7ff286e0 100644 --- a/nf_core/pipeline-template/nextflow.config +++ b/nf_core/pipeline-template/nextflow.config @@ -81,7 +81,10 @@ try { {% endif %} profiles { - debug { process.beforeScript = 'echo $HOSTNAME' } + debug { + dumpHashes = true + process.beforeScript = 'echo $HOSTNAME' + } conda { conda.enabled = true docker.enabled = false From b57c1ab6c4043d7f5430949ae0c2c74a20c4f632 Mon Sep 17 00:00:00 2001 From: "Maxime U. Garcia" Date: Mon, 23 Jan 2023 17:58:10 +0100 Subject: [PATCH 2/3] Update nf_core/pipeline-template/nextflow.config spacing --- nf_core/pipeline-template/nextflow.config | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/nf_core/pipeline-template/nextflow.config b/nf_core/pipeline-template/nextflow.config index 9c7ff286e0..fe8c6587ab 100644 --- a/nf_core/pipeline-template/nextflow.config +++ b/nf_core/pipeline-template/nextflow.config @@ -82,8 +82,8 @@ try { profiles { debug { - dumpHashes = true - process.beforeScript = 'echo $HOSTNAME' + dumpHashes = true + process.beforeScript = 'echo $HOSTNAME' } conda { conda.enabled = true From 1f30b401b801d43ac025a42a150ee20f5accce38 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?J=C3=BAlia=20Mir=20Pedrol?= Date: Wed, 5 Apr 2023 11:01:06 +0200 Subject: [PATCH 3/3] Update nf_core/pipeline-template/nextflow.config --- nf_core/pipeline-template/nextflow.config | 1 + 1 file changed, 1 insertion(+) diff --git a/nf_core/pipeline-template/nextflow.config b/nf_core/pipeline-template/nextflow.config index fe8c6587ab..42643ac9fe 100644 --- a/nf_core/pipeline-template/nextflow.config +++ b/nf_core/pipeline-template/nextflow.config @@ -84,6 +84,7 @@ profiles { debug { dumpHashes = true process.beforeScript = 'echo $HOSTNAME' + cleanup = false } conda { conda.enabled = true