From 465325e5416dcd02878d2b9170c6817abc20dd1f Mon Sep 17 00:00:00 2001 From: "renovate[bot]" <29139614+renovate[bot]@users.noreply.github.com> Date: Wed, 27 Mar 2024 00:56:45 +0000 Subject: [PATCH 1/2] chore(deps): update github actions --- .github/workflows/changelog.yml | 4 ++-- .github/workflows/create-lint-wf.yml | 2 +- .github/workflows/create-test-lint-wf-template.yml | 2 +- .github/workflows/create-test-wf.yml | 2 +- .github/workflows/deploy-pypi.yml | 2 +- .github/workflows/fix-linting.yml | 2 +- .github/workflows/lint-code.yml | 2 +- .github/workflows/pytest.yml | 6 +++--- .github/workflows/rich-codex.yml | 2 +- .github/workflows/sync.yml | 2 +- .github/workflows/update_components_template.yml | 2 +- .../.github/workflows/download_pipeline.yml | 2 +- nf_core/pipeline-template/.github/workflows/fix-linting.yml | 2 +- nf_core/pipeline-template/.github/workflows/linting.yml | 4 ++-- .../.github/workflows/release-announcements.yml | 2 +- 15 files changed, 19 insertions(+), 19 deletions(-) diff --git a/.github/workflows/changelog.yml b/.github/workflows/changelog.yml index 50d835fd5c..bed104e2d9 100644 --- a/.github/workflows/changelog.yml +++ b/.github/workflows/changelog.yml @@ -36,7 +36,7 @@ jobs: fi gh pr checkout $PR_NUMBER - - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5 + - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 with: python-version: "3.12" @@ -65,7 +65,7 @@ jobs: echo "File changed: ${{ env.changed }}" - name: Set up Python 3.12 - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5 + uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 with: python-version: "3.12" cache: "pip" diff --git a/.github/workflows/create-lint-wf.yml b/.github/workflows/create-lint-wf.yml index 3e93918ed1..996bdf2799 100644 --- a/.github/workflows/create-lint-wf.yml +++ b/.github/workflows/create-lint-wf.yml @@ -53,7 +53,7 @@ jobs: # Set up nf-core/tools - name: Set up Python 3.12 - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5 + uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 with: python-version: "3.12" cache: pip diff --git a/.github/workflows/create-test-lint-wf-template.yml b/.github/workflows/create-test-lint-wf-template.yml index 988e5bb5b0..4ef448e5ec 100644 --- a/.github/workflows/create-test-lint-wf-template.yml +++ b/.github/workflows/create-test-lint-wf-template.yml @@ -65,7 +65,7 @@ jobs: name: Check out source-code repository - name: Set up Python 3.12 - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5 + uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 with: python-version: "3.12" diff --git a/.github/workflows/create-test-wf.yml b/.github/workflows/create-test-wf.yml index 3b7c02ca86..952181c044 100644 --- a/.github/workflows/create-test-wf.yml +++ b/.github/workflows/create-test-wf.yml @@ -52,7 +52,7 @@ jobs: name: Check out source-code repository - name: Set up Python 3.12 - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5 + uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 with: python-version: "3.12" diff --git a/.github/workflows/deploy-pypi.yml b/.github/workflows/deploy-pypi.yml index ca698dad1f..ec94ddb88f 100644 --- a/.github/workflows/deploy-pypi.yml +++ b/.github/workflows/deploy-pypi.yml @@ -17,7 +17,7 @@ jobs: name: Check out source-code repository - name: Set up Python 3.12 - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5 + uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 with: python-version: "3.12" diff --git a/.github/workflows/fix-linting.yml b/.github/workflows/fix-linting.yml index 3e6c4d4ef6..b3f73c5a8c 100644 --- a/.github/workflows/fix-linting.yml +++ b/.github/workflows/fix-linting.yml @@ -32,7 +32,7 @@ jobs: GITHUB_TOKEN: ${{ secrets.nf_core_bot_auth_token }} # Install and run pre-commit - - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5 + - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 with: python-version: "3.12" diff --git a/.github/workflows/lint-code.yml b/.github/workflows/lint-code.yml index 53151a8989..51a543c143 100644 --- a/.github/workflows/lint-code.yml +++ b/.github/workflows/lint-code.yml @@ -21,7 +21,7 @@ jobs: - uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4 - name: Set up Python 3.12 - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5 + uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 with: python-version: "3.12" cache: "pip" diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index b03aab7cdf..93a44aea5e 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -91,7 +91,7 @@ jobs: name: Check out source-code repository - name: Set up Python ${{ needs.setup.outputs.python-version }} - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5 + uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 with: python-version: ${{ needs.setup.outputs.python-version }} cache: "pip" @@ -160,7 +160,7 @@ jobs: - uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4 - name: Set up Python 3.12 - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5 + uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 env: AGENT_TOOLSDIRECTORY: /opt/actions-runner/_work/tools/tools/ with: @@ -184,7 +184,7 @@ jobs: coverage report coverage xml - - uses: codecov/codecov-action@54bcd8715eee62d40e33596ef5e8f0f48dbbccab # v4 + - uses: codecov/codecov-action@c16abc29c95fcf9174b58eb7e1abf4c866893bc8 # v4 with: files: coverage.xml env: diff --git a/.github/workflows/rich-codex.yml b/.github/workflows/rich-codex.yml index 13fd71a883..fc8af8a7bc 100644 --- a/.github/workflows/rich-codex.yml +++ b/.github/workflows/rich-codex.yml @@ -8,7 +8,7 @@ jobs: - name: Check out the repo uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4 - name: Set up Python - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5 + uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 with: python-version: 3.x cache: pip diff --git a/.github/workflows/sync.yml b/.github/workflows/sync.yml index 9eeb32ccf3..2adb970f64 100644 --- a/.github/workflows/sync.yml +++ b/.github/workflows/sync.yml @@ -57,7 +57,7 @@ jobs: fetch-depth: "0" - name: Set up Python 3.12 - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5 + uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 with: python-version: "3.12" diff --git a/.github/workflows/update_components_template.yml b/.github/workflows/update_components_template.yml index 0fa3adaf20..c5413cd557 100644 --- a/.github/workflows/update_components_template.yml +++ b/.github/workflows/update_components_template.yml @@ -14,7 +14,7 @@ jobs: uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4 - name: Set up Python - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5 + uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 with: python-version: "3.x" diff --git a/nf_core/pipeline-template/.github/workflows/download_pipeline.yml b/nf_core/pipeline-template/.github/workflows/download_pipeline.yml index 3b791980f2..ebea16c5cb 100644 --- a/nf_core/pipeline-template/.github/workflows/download_pipeline.yml +++ b/nf_core/pipeline-template/.github/workflows/download_pipeline.yml @@ -35,7 +35,7 @@ jobs: - name: Disk space cleanup uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1 - - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5 + - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 with: python-version: "3.12" architecture: "x64" diff --git a/nf_core/pipeline-template/.github/workflows/fix-linting.yml b/nf_core/pipeline-template/.github/workflows/fix-linting.yml index e976b9f09c..bc15ce42e8 100644 --- a/nf_core/pipeline-template/.github/workflows/fix-linting.yml +++ b/nf_core/pipeline-template/.github/workflows/fix-linting.yml @@ -32,7 +32,7 @@ jobs: GITHUB_TOKEN: ${{ secrets.nf_core_bot_auth_token }} # Install and run pre-commit - - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5 + - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 with: python-version: "3.12" diff --git a/nf_core/pipeline-template/.github/workflows/linting.yml b/nf_core/pipeline-template/.github/workflows/linting.yml index 90cca8c2ce..a8208b31ac 100644 --- a/nf_core/pipeline-template/.github/workflows/linting.yml +++ b/nf_core/pipeline-template/.github/workflows/linting.yml @@ -17,7 +17,7 @@ jobs: - uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4 - name: Set up Python 3.12 - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5 + uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 with: python-version: "3.12" cache: "pip" @@ -37,7 +37,7 @@ jobs: - name: Install Nextflow uses: nf-core/setup-nextflow@v2 - - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5 + - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 with: python-version: "3.12" architecture: "x64" diff --git a/nf_core/pipeline-template/.github/workflows/release-announcements.yml b/nf_core/pipeline-template/.github/workflows/release-announcements.yml index 2c57060257..8fee061fdd 100644 --- a/nf_core/pipeline-template/.github/workflows/release-announcements.yml +++ b/nf_core/pipeline-template/.github/workflows/release-announcements.yml @@ -31,7 +31,7 @@ jobs: runs-on: ubuntu-latest steps: - - uses: actions/setup-python@0a5c61591373683505ea898e09a3ea4f39ef2b9c # v5 + - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 with: python-version: "3.10" - name: Install dependencies From 8efa0ec4174d5fe849de89a36b9b9dfd546434de Mon Sep 17 00:00:00 2001 From: nf-core-bot Date: Thu, 28 Mar 2024 02:23:07 +0000 Subject: [PATCH 2/2] [automated] Update CHANGELOG.md --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index ff85badfbc..f6285fca72 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -44,6 +44,7 @@ - Make cli-provided module/subworkflow names case insensitive ([#2869](https://github.com/nf-core/tools/pull/2869)) - Update gitpod/workspace-base Docker digest to 168d78b ([#2899](https://github.com/nf-core/tools/pull/2899)) - Update pre-commit hook astral-sh/ruff-pre-commit to v0.3.4 ([#2894](https://github.com/nf-core/tools/pull/2894)) +- Update GitHub Actions ([#2902](https://github.com/nf-core/tools/pull/2902)) ## [v2.13.1 - Tin Puppy Patch](https://github.com/nf-core/tools/releases/tag/2.13) - [2024-02-29]