diff --git a/.cache.tar.xz b/.cache.tar.xz index dd78220767..1935f22298 100644 Binary files a/.cache.tar.xz and b/.cache.tar.xz differ diff --git a/public/components.json b/public/components.json index 924d6816a1..50cd82c61a 100644 --- a/public/components.json +++ b/public/components.json @@ -7568,6 +7568,10 @@ "name": "rnafusion", "version": "3.0.2" }, + { + "name": "rnafusion", + "version": "3.0.2" + }, { "name": "rnafusion", "version": "3.0.2" @@ -24600,6 +24604,14 @@ "name": "genomeassembler", "version": "dev" }, + { + "name": "pathogensurveillance", + "version": "dev" + }, + { + "name": "genomeassembler", + "version": "dev" + }, { "name": "pathogensurveillance", "version": "dev" @@ -105888,6 +105900,10 @@ "name": "genomeassembler", "version": "dev" }, + { + "name": "genomeassembler", + "version": "dev" + }, { "name": "genomeassembler", "version": "dev" diff --git a/public/pipelines.json b/public/pipelines.json index b560f8e331..97950e74b1 100644 --- a/public/pipelines.json +++ b/public/pipelines.json @@ -1440,12 +1440,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/atacseq", "created_at": "2018-11-05T17:49:32Z", - "updated_at": "2024-09-06T08:10:09Z", + "updated_at": "2024-09-22T08:24:31Z", "pushed_at": "2024-09-19T17:39:58Z", "homepage": "https://nf-co.re/atacseq", "size": 9944, - "stargazers_count": 179, - "watchers_count": 179, + "stargazers_count": 180, + "watchers_count": 180, "language": "Nextflow", "has_issues": true, "has_projects": false, @@ -1467,7 +1467,7 @@ "visibility": "public", "forks": 116, "open_issues": 28, - "watchers": 179, + "watchers": 180, "default_branch": "master", "temp_clone_token": "", "allow_squash_merge": false, @@ -14585,12 +14585,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/hic", "created_at": "2019-04-09T14:29:19Z", - "updated_at": "2024-09-15T14:15:03Z", + "updated_at": "2024-09-22T11:55:00Z", "pushed_at": "2024-07-18T20:38:33Z", "homepage": "https://nf-co.re/hic", "size": 3790, - "stargazers_count": 86, - "watchers_count": 86, + "stargazers_count": 87, + "watchers_count": 87, "language": "Nextflow", "has_issues": true, "has_projects": true, @@ -14612,7 +14612,7 @@ "visibility": "public", "forks": 55, "open_issues": 29, - "watchers": 86, + "watchers": 87, "default_branch": "master", "temp_clone_token": "", "allow_squash_merge": false, @@ -20545,9 +20545,9 @@ "url": "https://api.github.com/repos/nf-core/methylseq", "created_at": "2018-03-12T15:46:42Z", "updated_at": "2024-09-21T13:49:18Z", - "pushed_at": "2024-09-21T15:18:48Z", + "pushed_at": "2024-09-22T12:26:28Z", "homepage": "https://nf-co.re/methylseq", - "size": 21079, + "size": 21107, "stargazers_count": 137, "watchers_count": 137, "language": "Nextflow", @@ -22401,12 +22401,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/nanoseq", "created_at": "2019-09-09T11:23:29Z", - "updated_at": "2024-09-20T16:46:34Z", + "updated_at": "2024-09-22T05:46:18Z", "pushed_at": "2024-09-19T09:21:57Z", "homepage": "https://nf-co.re/nanoseq", "size": 7064, - "stargazers_count": 171, - "watchers_count": 171, + "stargazers_count": 172, + "watchers_count": 172, "language": "Nextflow", "has_issues": true, "has_projects": false, @@ -22430,7 +22430,7 @@ "visibility": "public", "forks": 81, "open_issues": 34, - "watchers": 171, + "watchers": 172, "default_branch": "master", "temp_clone_token": "", "allow_squash_merge": false, @@ -30962,12 +30962,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/rnaseq", "created_at": "2018-03-29T13:10:58Z", - "updated_at": "2024-09-20T18:03:37Z", + "updated_at": "2024-09-22T08:24:48Z", "pushed_at": "2024-09-20T15:52:33Z", "homepage": "https://nf-co.re/rnaseq", "size": 71422, - "stargazers_count": 870, - "watchers_count": 870, + "stargazers_count": 871, + "watchers_count": 871, "language": "Nextflow", "has_issues": true, "has_projects": false, @@ -30975,7 +30975,7 @@ "has_wiki": false, "has_pages": false, "has_discussions": false, - "forks_count": 695, + "forks_count": 694, "archived": false, "disabled": false, "open_issues_count": 63, @@ -30987,9 +30987,9 @@ "rna-seq" ], "visibility": "public", - "forks": 695, + "forks": 694, "open_issues": 63, - "watchers": 870, + "watchers": 871, "default_branch": "master", "temp_clone_token": "", "allow_squash_merge": false, @@ -31023,7 +31023,7 @@ "status": "disabled" } }, - "network_count": 695, + "network_count": 694, "subscribers_count": 152, "team_contributors_permission_push": true, "team_contributors_permission_admin": false, @@ -33007,12 +33007,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/rnasplice", "created_at": "2022-08-22T14:25:09Z", - "updated_at": "2024-09-03T19:12:00Z", + "updated_at": "2024-09-22T04:25:11Z", "pushed_at": "2024-08-21T19:26:03Z", "homepage": "https://nf-co.re/rnasplice", "size": 167320, - "stargazers_count": 41, - "watchers_count": 41, + "stargazers_count": 42, + "watchers_count": 42, "language": "Nextflow", "has_issues": true, "has_projects": true, @@ -33036,7 +33036,7 @@ "visibility": "public", "forks": 23, "open_issues": 11, - "watchers": 41, + "watchers": 42, "default_branch": "master", "temp_clone_token": "", "allow_squash_merge": false, @@ -36530,10 +36530,10 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/scdownstream", "created_at": "2024-06-11T06:38:31Z", - "updated_at": "2024-09-21T16:01:01Z", - "pushed_at": "2024-09-21T16:00:58Z", + "updated_at": "2024-09-22T12:51:29Z", + "pushed_at": "2024-09-22T12:51:25Z", "homepage": "https://nf-co.re/scdownstream", - "size": 1811, + "size": 1822, "stargazers_count": 28, "watchers_count": 28, "language": "Nextflow", @@ -36629,7 +36629,7 @@ "contributors": [ { "name": "nictru", - "count": 381, + "count": 382, "avatar_url": "https://avatars.githubusercontent.com/u/52698566?v=4" }, { @@ -36659,9 +36659,9 @@ } ], "released_after_tools": false, - "head_sha": "31210acc25f91a16266e0ea91ee9193e8308fd0b", + "head_sha": "898132018853fde53091d927e90440026dc4b2b8", "last_release_is_head": false, - "last_release_vs_default_compare_url": "https://github.com/nf-core/scdownstream/compare/31210acc25f91a16266e0ea91ee9193e8308fd0b...undefined", + "last_release_vs_default_compare_url": "https://github.com/nf-core/scdownstream/compare/898132018853fde53091d927e90440026dc4b2b8...undefined", "commits_to_dev": 30, "is_DSL2": true, "has_nf_test": false, @@ -36675,8 +36675,8 @@ "releases": [ { "tag_name": "dev", - "published_at": "2024-09-21T16:00:54Z", - "tag_sha": "31210acc25f91a16266e0ea91ee9193e8308fd0b", + "published_at": "2024-09-22T12:51:21Z", + "tag_sha": "898132018853fde53091d927e90440026dc4b2b8", "has_schema": true, "doc_files": [ "docs/output.md",