diff --git a/src/docs/_ignored/DataHub_GitHubDesktop.md b/src/docs/_ignored/DataHub_GitHubDesktop.md deleted file mode 100644 index 9800cc6a3..000000000 --- a/src/docs/_ignored/DataHub_GitHubDesktop.md +++ /dev/null @@ -1,58 +0,0 @@ ---- -layout: docs -title: "How-To: Synchronize DataHUB ARCs via GitHub Desktop" -date: 2022-07-01 -author: -- name: Dominik Brilhaus - github: https://github.com/brilator - orcid: https://orcid.org/0000-0001-9021-3197 -add toc: false -add sidebar: _sidebars/hiddenMenuSidebar.md ---- - -## Goal - -Use [GitHub Desktop](https://desktop.github.com/) to synchronize ARCs between the DataHUB and your local machine. -GitHub Desktop is a user-friendly software to help you synchronize (pull, commit, push, ...) and track and communicate changes (diff, pull request, ...) git repositories without memorizing and executing the git commands in your command line. - -> Note: This authenticates your local GitHub Desktop to communicate with the DataHUB. -> You need to do this only once per machine (unless you specify an expiration date in step 4) - -## Steps - -1. Download [GitHub Desktop](https://desktop.github.com/) -2. Sign in to the [DataHUB](https://git.nfdi4plants.org/) -3. Go to the [Access Tokens](https://git.nfdi4plants.org/-/profile/personal_access_tokens) settings -4. Fill all required information - 1. Token name: e.g. "GitHub Desktop" - 2. Expiration date (optional) - 3. Select scope: `api` - -![Access Token](./../img/datahub-accessToken01.drawio.svg) - -5. Click "Create personal access token" -6. `Your new personal access token` appears on top. Copy it somewhere for later use. - -![Access Token](./../img/datahub-accessToken02.drawio.svg) - -7. Within the DataHUB, go to your ARC. -8. Click on `Clone` and copy the HTTPS url, e.g. `https://git.nfdi4plants.org//.git` - -![DataHUB Clone](./../img/datahub_clone.png) - -9. Open GitHub Desktop. -10. Select `File` -> `Clone repository` - -![GitHub Desktop Clone](./../img/githubDesktop_clone.png) - -11. Select the tab `URL` on top. -12. Paste the HTTPS link to your ARC (step 8) inside the URL field and select the destination folder, where your ARC will be stored locally. Click `Clone` -13. A pop-up window "Authentication Failed" will ask you for Username and Password. Fill in the - 1. Username: this is your DataHUB username. You can find it under your avatar in the DataHUB - 2. Password: paste the access token copied in step 6. - -![GitHub Desktop Clone](./../img/githubDesktop_accessToken.png) - -14. Click `Save and Retry`. - -15. Your ARC is now available in your GitHub Desktop. diff --git a/src/docs/_ignored/onboarding_technical.md b/src/docs/_ignored/onboarding_technical.md deleted file mode 100644 index 6a7f64725..000000000 --- a/src/docs/_ignored/onboarding_technical.md +++ /dev/null @@ -1,120 +0,0 @@ ---- -layout: docs -title: DataPLANT Technical Onboarding -date: 2022-09-23 -author: -- name: Dominik Brilhaus - github: https://github.com/brilator - orcid: https://orcid.org/0000-0001-9021-3197 -add toc: false -add sidebar: _sidebars/hiddenMenuSidebar.md -add support: false ---- - -We are very happy that you would like to employ or contribute to the DataPLANT tools and services. -The following is supposed to give you an overview of required or recommended software to install and accounts to sign up to get you started quickly. For more details, please explore the DataPLANT Knowledge Base and linked resources below. - -## All users - -- In order to use [Swate][kb-Swate] you need to have Microsoft Excel locally installed or access to [Microsoft Excel online][ext-excel-online]. - -- Find the **command-line interface (CLI)** on your system. - - On Windows: Enter `powershell` into the explorer path. - - On MacOS: Search `terminal` via spotlight or navigate to `Applications` -> `Utilities` -> `Terminal` - - - > Note: - > - > - We mostly avoid asking you to use the CLI. However, this is required for some of the installation steps below. Most modern operating systems come with a pre-installed CLI. If none of the above works, please get in touch. - -- Please install [git][ext-git] and [git-lfs][ext-git-lfs] on your system. - - > Note: - > - > - For some operating systems *git-lfs* may already be available as part of the *git* installation - > - On MacOS we recommend git installation via `homebrew` following the [git website's][ext-git] instruction. This may require installation of `homebrew` as instructed there. - -- Please install [ARC Commander][gh-ArcCommander] on your system. -- Please install [Swate][gh-Swate] on your system. -- Please [sign up][hp-Registration] with DataPLANT to use the [DataHUB][hp-DataHUB]. - - - -## Data stewards and contributors - -### GitHub - -Most DataPLANT tools and services are collaboratively and transparently developed at [GitHub][gh-DataPlant]. If you would like to contribute, [please sign up with GitHub][ext-github-join] and use common git routines, such as opening issues or fork-edit-pull-request a repository. - -### Microsoft Teams - -Within DataPLANT we communicate via Microsoft Teams. If you would like to join DataPLANT as a data steward for your community, please contact us via email. - -### Other recommended software - -- [GitHub Desktop][ext-github-desktop] is a convenient software to avoid using git via the CLI. -- [Visual Studio Code][ext-VSCode] is an integrated development environment (IDE) with git integration and convenient extensions. - - - - - -[kb-DataManagementPlan]: ../fundamentals/DataManagementPlan.html "Data Management Plan" -[kb-DataPublications]: ../fundamentals/DataPublications.html "Data Publication" -[kb-DataSharing]: ../fundamentals/DataSharing.html "Data Sharing" -[kb-FairDataPrinciples]: ../fundamentals/FairDataPrinciples.html "FAIR Data principles" -[kb-Metadata]: ../fundamentals/Metadata.html "Metadata" -[kb-PersistentIdentifiers]: ../fundamentals/PersistentIdentifiers.html "Persistent Identifiers" -[kb-PublicDataRepositories]: ../fundamentals/PublicDataRepositories.html "Repositories" -[kb-ResearchDataManagement]: ../fundamentals/ResearchDataManagement.html "Research Data Management" -[kb-VersionControlGit]: ../fundamentals/VersionControlGit.html "Version Control and Git" - - -[kb-AnnotatedResearchContext]: ../implementation/AnnotatedResearchContext.html "Annotated Research Context" -[kb-DataHub]: ../implementation/DataHub.html "DataPLANT DataHUB" -[kb-ArcCommander]: ../implementation/ArcCommander.html "DataPLANT ARC Commander" -[kb-Swate]: ../implementation/Swate.html "DataPLANT Swate" - - -[kb-QuickStart_arc]: ../tutorials/ARCUserJourney.html "ARC User Journey" -[kb-swate_QuickStart]: ../tutorials/swate_QuickStart.html "Quickstart Swate" -[kb-arcCommander_QuickStart]: ../tutorials/arcCommander_QuickStart.html "QuickStart ARC Commander" - - - -[hp-Registration]: "DataPLANT Registration" -[hp-DataHUB]: "DataPLANT DataHUB" -[hp-HelpDesk]: "DataPLANT Help Desk" - - - -[gh-DataPlant]: "GitHub DataPLANT" -[gh-ArcSpecs]: "ARC specifications" -[gh-ArcCommander]: "ArcCommander" -[kb-ArcCommander-Manual]: ../ArcCommanderManual/index.html "ARC Commander Manual" -[gh-Swate]: "GitHub Swate" - - - -[ext-github-join]: "Join GitHub" -[ext-github-desktop]: "GitHub Desktop" -[ext-git]: "Git" -[ext-git-lfs]: "Git-LFS" -[ext-excel-online]: "Excel online" -[ext-VSCode]: https://code.visualstudio.com/ "Visual Studio Code" - -[ext-galaxy]: "Galaxy Plants" -[ext-omero]: "Omero" -[ext-zenodo]: "Zenodo" -[ext-invenio]: "Invenio" -[ext-DataJournals]: https://www.researchdata.uni-jena.de/en/information/data-publication "RDM Jena Data Journals" - -[ext-EBI-PRIDE]: https://www.ebi.ac.uk/pride/ "EBI PRIDE" -[ext-re3data]: https://www.re3data.org/ "re3data.org" -[ext-CreativeCommons]: https://creativecommons.org/ "Creative Commons" -[ext-DublinCore]: "DublinCore" -[ext-DataCite]: "DataCite" -[fairsharing.org]: https://fairsharing.org/search?fairsharingRegistry=Standard "Standards at fairsharing.org" -[doi]: https://www.doi.org/ "Digital Object Identifier" -[orcid]: https://www.orcid.org/ "ORCID"