From f60cc296070792efd52ce5a67c9866892f7fc57d Mon Sep 17 00:00:00 2001 From: Bradley Lowekamp Date: Fri, 6 Oct 2023 08:28:49 -0400 Subject: [PATCH 1/4] Restore mad_scale parameter when computing NG min/max parameters --- em_workflows/brt/flow.py | 2 +- em_workflows/sem_tomo/flow.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/em_workflows/brt/flow.py b/em_workflows/brt/flow.py index 5c1b36d8..328903aa 100644 --- a/em_workflows/brt/flow.py +++ b/em_workflows/brt/flow.py @@ -521,7 +521,7 @@ def gen_ng_metadata(fp_in: FilePath) -> Dict: ng_asset["metadata"] = { "shader": hw_image.shader_type, "dimensions": hw_image.dims, - "shaderParameters": hw_image.neuroglancer_shader_parameters(), + "shaderParameters": hw_image.neuroglancer_shader_parameters(mad_scale=5.0), } return ng_asset diff --git a/em_workflows/sem_tomo/flow.py b/em_workflows/sem_tomo/flow.py index e8625e8c..786e7cb5 100644 --- a/em_workflows/sem_tomo/flow.py +++ b/em_workflows/sem_tomo/flow.py @@ -252,7 +252,7 @@ def gen_ng_metadata(fp_in: FilePath) -> Dict: ng_asset["metadata"] = dict( shader=hw_image.shader_type, dimensions=hw_image.dims, - shaderParameters=hw_image.neuroglancer_shader_parameters(), + shaderParameters=hw_image.neuroglancer_shader_parameters(mad_scale=5.0), ) return ng_asset From f42f8337c3089311eb0842906380d72250d08b2f Mon Sep 17 00:00:00 2001 From: Bradley Lowekamp Date: Fri, 6 Oct 2023 08:29:22 -0400 Subject: [PATCH 2/4] Add mad_scale=5.0 to IF min/max parameters --- em_workflows/czi/flow.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/em_workflows/czi/flow.py b/em_workflows/czi/flow.py index 1b816f0b..82204a5f 100644 --- a/em_workflows/czi/flow.py +++ b/em_workflows/czi/flow.py @@ -69,7 +69,7 @@ def gen_imageSet(file_path: FilePath) -> List: ng_asset["metadata"] = dict( shader=image.shader_type, dimensions=image.dims, - shaderParameters=image.neuroglancer_shader_parameters(), + shaderParameters=image.neuroglancer_shader_parameters(mad_scale=5.0), ) assets.append(ng_asset) image_elt["assets"] = assets From 96fe40e0497d0e7e31ce39b5a4dca2b8019a4705 Mon Sep 17 00:00:00 2001 From: Bradley Lowekamp Date: Fri, 6 Oct 2023 08:28:49 -0400 Subject: [PATCH 3/4] Restore mad_scale parameter when computing NG min/max parameters --- em_workflows/brt/flow.py | 2 +- em_workflows/sem_tomo/flow.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/em_workflows/brt/flow.py b/em_workflows/brt/flow.py index 5c1b36d8..328903aa 100644 --- a/em_workflows/brt/flow.py +++ b/em_workflows/brt/flow.py @@ -521,7 +521,7 @@ def gen_ng_metadata(fp_in: FilePath) -> Dict: ng_asset["metadata"] = { "shader": hw_image.shader_type, "dimensions": hw_image.dims, - "shaderParameters": hw_image.neuroglancer_shader_parameters(), + "shaderParameters": hw_image.neuroglancer_shader_parameters(mad_scale=5.0), } return ng_asset diff --git a/em_workflows/sem_tomo/flow.py b/em_workflows/sem_tomo/flow.py index e8625e8c..786e7cb5 100644 --- a/em_workflows/sem_tomo/flow.py +++ b/em_workflows/sem_tomo/flow.py @@ -252,7 +252,7 @@ def gen_ng_metadata(fp_in: FilePath) -> Dict: ng_asset["metadata"] = dict( shader=hw_image.shader_type, dimensions=hw_image.dims, - shaderParameters=hw_image.neuroglancer_shader_parameters(), + shaderParameters=hw_image.neuroglancer_shader_parameters(mad_scale=5.0), ) return ng_asset From c3cbc6f185fcff46dfa3fbf9a3d23ca0056df28a Mon Sep 17 00:00:00 2001 From: Bradley Lowekamp Date: Fri, 6 Oct 2023 08:29:22 -0400 Subject: [PATCH 4/4] Add mad_scale=5.0 to IF min/max parameters --- em_workflows/czi/flow.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/em_workflows/czi/flow.py b/em_workflows/czi/flow.py index 2b262dd3..a22a3b0d 100644 --- a/em_workflows/czi/flow.py +++ b/em_workflows/czi/flow.py @@ -71,7 +71,7 @@ def gen_imageSet(file_path: FilePath) -> List: ng_asset["metadata"] = dict( shader=image.shader_type, dimensions="XY", - shaderParameters=image.neuroglancer_shader_parameters(), + shaderParameters=image.neuroglancer_shader_parameters(mad_scale=5.0), ) assets.append(ng_asset) image_elt["assets"] = assets