From ce39645a84763482270d4e001a100d0d87760b05 Mon Sep 17 00:00:00 2001 From: andrewjpage Date: Tue, 1 Mar 2016 09:01:03 +0000 Subject: [PATCH 1/2] midpoint rerooting --- README.md | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/README.md b/README.md index ddcceb13..576f7ca5 100644 --- a/README.md +++ b/README.md @@ -125,3 +125,8 @@ Data from the paper =================== * ftp://ftp.sanger.ac.uk/pub/project/pathogens/gubbins/PMEN1.aln.gz * ftp://ftp.sanger.ac.uk/pub/project/pathogens/gubbins/ST239.aln.gz +* + +Midpoint rerooting +================== +From version 1.3.5 (25/6/15) to version 1.4.6 (29/2/16) trees were not midpoint rerooted by default. This doesnt have any effect on the recombination detection, but the output trees didnt look as expected. Users are advised to upgrade to the latest version. From 3f9e92c757706cd831296f7d82b4b5fbddc96d77 Mon Sep 17 00:00:00 2001 From: andrewjpage Date: Tue, 1 Mar 2016 09:06:07 +0000 Subject: [PATCH 2/2] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 576f7ca5..8bdc5af7 100644 --- a/README.md +++ b/README.md @@ -129,4 +129,4 @@ Data from the paper Midpoint rerooting ================== -From version 1.3.5 (25/6/15) to version 1.4.6 (29/2/16) trees were not midpoint rerooted by default. This doesnt have any effect on the recombination detection, but the output trees didnt look as expected. Users are advised to upgrade to the latest version. +From version 1.3.5 (25/6/15) to version 1.4.6 (29/2/16) trees were not midpoint rerooted by default. This doesnt have any effect on the recombination detection, but the output trees may not look as expected. Users are advised to upgrade to the latest version.