TreeSwift v1.1.25

• Updated documentation of read_tree_nexus function based on updated functionality

TreeSwift v1.1.24

• Fixed bug when reading Nexus files that have information on the left side of the = of a tree
  • Example: tree STATE_0 [...] = [&R] (...);
  • BEAST seems to output trees in this format
  • Now, if a Nexus tree is loaded into a variable trees, the information in the [...] block to the left of the = will be stored in trees['info']

TreeSwift v1.1.23

• Fixed bug in which a comma would be added to the end of translated taxon labels in Nexus files
  • Thanks for catching that, @pekarj!

TreeSwift v1.1.22

• Fixed reading taxon labels and translations when reading Nexus trees
  • Thanks for catching that, @pekarj!

TreeSwift v1.1.21

• Fixed bug when reading a Newick (or Nexus) with edge parameters
  • Example: A node with label 447[blahblahblah] is now correctly read such that node.label == '447' and node.edge_params == 'blahblahblah'
  • Thanks for catching that, @pekarj!

TreeSwift v1.1.20

• Fixed bug when computing average branch length of a tree with leaves without branch lengths (thanks, @richardmansfield!)

TreeSwift v1.1.19

• Fixed default behavior of contract_low_support to not contract leaves

TreeSwift v1.1.18

• Simplified contract_low_support fix

TreeSwift v1.1.17

• Fixed bug in traverse_rootdistorder when node doesn't have branch length
• Fixed bug in contract_low_support when leaf nodes also have numeric labels
• Fixed bug in diameter to support one-node trees and to support trees with unifurcations

TreeSwift v1.1.16

• Fixed bug printing Newick string of tree without root edge length