From b31303001cf86ecdbede920b75dfde1411ce5e93 Mon Sep 17 00:00:00 2001 From: oesteban Date: Wed, 2 May 2018 14:51:56 -0700 Subject: [PATCH] [TST] Refactoring CircleCI setup Moves `--use-aroma` to ds054 with two ideas: * Shorten ds005 which was growing too large (CIFTI, partial exec, etc.) * Remove SyN from ds054 because it has fieldmaps, and make time for AROMA. Overall, this PR should shorten the runtime of tests. Also, figures/ folder has been pruned out of the outputs check (reports can be visualized and this check is a source of many errors). Supersedes #1092 (close #1092) --- .circleci/config.yml | 120 ++++++++++-------- .circleci/ds005_outputs.txt | 18 --- .circleci/ds005_partial_outputs.txt | 15 --- .circleci/ds054_outputs.txt | 22 +--- ...ds000210_outputs.txt => ds210_outputs.txt} | 8 +- 5 files changed, 76 insertions(+), 107 deletions(-) rename .circleci/{ds000210_outputs.txt => ds210_outputs.txt} (83%) diff --git a/.circleci/config.yml b/.circleci/config.yml index 2af25cce1..cdf17db6d 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -108,10 +108,10 @@ jobs: - run: name: Get test data from ds000210 command: | - if [[ ! -d /tmp/data/ds000210 ]]; then + if [[ ! -d /tmp/data/ds210 ]]; then wget --retry-connrefused --waitretry=5 --read-timeout=20 --timeout=15 -t 0 -q \ - -O ds000210_downsampled.tar.gz "https://files.osf.io/v1/resources/fvuh8/providers/osfstorage/5a6e952c6396f90010bb7a26" - tar xvzf ds000210_downsampled.tar.gz -C /tmp/data/ + -O ds210_downsampled.tar.gz "https://files.osf.io/v1/resources/fvuh8/providers/osfstorage/5ae9e37b9a64d7000ce66c21" + tar xvzf ds210_downsampled.tar.gz -C /tmp/data/ else echo "Dataset ds000210 was cached" fi @@ -135,12 +135,12 @@ jobs: - run: name: Create Nipype config files command: | - mkdir -p /tmp/ds005 /tmp/ds054 /tmp/ds000210 + mkdir -p /tmp/ds005 /tmp/ds054 /tmp/ds210 printf "[execution]\nstop_on_first_crash = true\nremove_unnecessary_outputs = false\n" > /tmp/ds005/nipype.cfg echo "poll_sleep_duration = 0.2" >> /tmp/ds005/nipype.cfg echo "hash_method = content" >> /tmp/ds005/nipype.cfg cp /tmp/ds005/nipype.cfg /tmp/ds054/nipype.cfg - cp /tmp/ds005/nipype.cfg /tmp/ds000210/nipype.cfg + cp /tmp/ds005/nipype.cfg /tmp/ds210/nipype.cfg - persist_to_workspace: root: /tmp paths: @@ -149,7 +149,7 @@ jobs: - ds005/nipype.cfg - ds005/derivatives - ds054/nipype.cfg - - ds000210/nipype.cfg + - ds210/nipype.cfg - save_cache: key: data-v5-{{ epoch }} paths: @@ -296,10 +296,10 @@ jobs: at: /tmp - restore_cache: keys: - - ds005-anat-v5-{{ .Branch }}-{{ epoch }} - - ds005-anat-v5-{{ .Branch }} - - ds005-anat-v5-master - - ds005-anat-v5- + - ds005-anat-v6-{{ .Branch }}-{{ epoch }} + - ds005-anat-v6-{{ .Branch }} + - ds005-anat-v6-master + - ds005-anat-v6- - run: name: Setting up test command: | @@ -332,7 +332,7 @@ jobs: --debug --write-graph --mem_mb 4096 \ --nthreads 2 --anat-only -vv - save_cache: - key: ds005-anat-v5-{{ .Branch }}-{{ epoch }} + key: ds005-anat-v6-{{ .Branch }}-{{ epoch }} paths: - /tmp/ds005/work - /tmp/ds005/derivatives/fmriprep @@ -341,11 +341,14 @@ jobs: name: Run full fMRIPrep on ds005 no_output_timeout: 2h command: | + sudo setfacl -d -m group:$(id -gn):rwx /tmp/ds005/derivatives && \ + sudo setfacl -m group:$(id -gn):rwx /tmp/ds005/derivatives + sudo setfacl -d -m group:$(id -gn):rwx /tmp/ds005/work && \ + sudo setfacl -m group:$(id -gn):rwx /tmp/ds005/work fmriprep-docker -i poldracklab/fmriprep:latest \ --config $PWD/nipype.cfg -w /tmp/ds005/work \ /tmp/data/ds005 /tmp/ds005/derivatives participant \ - --debug --write-graph --use-syn-sdc --use-aroma \ - --ignore-aroma-denoising-errors --mem_mb 4096 \ + --debug --write-graph --use-syn-sdc --mem_mb 4096 \ --output-space T1w template fsaverage5 \ --template-resampling-grid native \ --nthreads 2 --cifti-output -vv @@ -359,7 +362,7 @@ jobs: name: Checking outputs of full fMRIPrep run command: | mkdir -p /tmp/ds005/test - find /tmp/ds005/derivatives | sed s+/tmp/ds005/derivatives/++ | sort > /tmp/ds005/test/outputs.out + find /tmp/ds005/derivatives -path */figures -prune -o -name "*" -print | sed s+/tmp/ds005/derivatives/++ | sort > /tmp/ds005/test/outputs.out diff /tmp/src/fmriprep/.circleci/ds005_outputs.txt /tmp/ds005/test/outputs.out exit $? - run: @@ -370,8 +373,7 @@ jobs: fmriprep-docker -i poldracklab/fmriprep:latest \ --config $PWD/nipype.cfg -w /tmp/ds005/work \ /tmp/data/ds005 /tmp/ds005/derivatives_partial participant \ - --debug --write-graph --use-syn-sdc --use-aroma \ - --ignore-aroma-denoising-errors --mem_mb 4096 \ + --debug --write-graph --use-syn-sdc --mem_mb 4096 \ --output-space T1w template fsaverage5 \ --template-resampling-grid native \ --nthreads 2 --cifti-output -vv @@ -380,16 +382,19 @@ jobs: command: | mkdir -p /tmp/ds005/test sudo rm -rf /tmp/ds005/derivatives_partial/freesurfer - find /tmp/ds005/derivatives_partial | sed s+/tmp/ds005/derivatives_partial/++ | sort > /tmp/ds005/test/outputs.out + find /tmp/ds005/derivatives_partial -path */figures -prune -o -name "*" -print | sed s+/tmp/ds005/derivatives_partial/++ | sort > /tmp/ds005/test/outputs.out diff /tmp/src/fmriprep/.circleci/ds005_partial_outputs.txt /tmp/ds005/test/outputs.out exit $? - run: name: Clean working directory + when: always command: | - sudo find /tmp/ds005/work -not -name "*.svg" -not -name "*.html" -not -name "*.rst" \ + sudo chown $(id -un):$(id -gn) -R /tmp/ds005 + find /tmp/ds005/work -not -name "*.svg" -not -name "*.html" -not -name "*.rst" \ -not -name "*.mat" -not -name "*.lta" -type f -delete - sudo find /tmp/ds005/work_partial -not -name "*.svg" -not -name "*.html" -not -name "*.rst" \ + find /tmp/ds005/work_partial -not -name "*.svg" -not -name "*.html" -not -name "*.rst" \ -not -name "*.mat" -not -name "*.lta" -type f -delete + # tar cf - work_partial/ | pigz -2 -p 2 > ds005_workdir.tar.gz && sudo rm -fr work work_partial - store_artifacts: path: /tmp/ds005 @@ -415,10 +420,10 @@ jobs: at: /tmp - restore_cache: keys: - - ds054-anat-v3-{{ .Branch }}-{{ epoch }} - - ds054-anat-v3-{{ .Branch }} - - ds054-anat-v3-master - - ds054-anat-v3- + - ds054-anat-v4-{{ .Branch }}-{{ epoch }} + - ds054-anat-v4-{{ .Branch }} + - ds054-anat-v4-master + - ds054-anat-v4- - run: name: Setting up test command: | @@ -451,7 +456,7 @@ jobs: --fs-no-reconall --debug --write-graph \ --mem_mb 4096 --nthreads 2 --anat-only -vv - save_cache: - key: ds054-anat-v3-{{ .Branch }}-{{ epoch }} + key: ds054-anat-v4-{{ .Branch }}-{{ epoch }} paths: - /tmp/ds054/work - /tmp/ds054/derivatives @@ -460,10 +465,15 @@ jobs: name: Run full fMRIPrep on ds054 no_output_timeout: 2h command: | + sudo setfacl -d -m group:$(id -gn):rwx /tmp/ds054/derivatives && \ + sudo setfacl -m group:$(id -gn):rwx /tmp/ds054/derivatives + sudo setfacl -d -m group:$(id -gn):rwx /tmp/ds054/work && \ + sudo setfacl -m group:$(id -gn):rwx /tmp/ds054/work fmriprep-docker -i poldracklab/fmriprep:latest \ --config $PWD/nipype.cfg -w /tmp/ds054/work \ /tmp/data/ds054 /tmp/ds054/derivatives participant \ - --fs-no-reconall --debug --force-syn \ + --fs-no-reconall --debug \ + --ignore-aroma-denoising-errors --use-aroma \ --output-space T1w template \ --template-resampling-grid 2mm \ --mem_mb 4096 --nthreads 2 -vv @@ -471,7 +481,7 @@ jobs: name: Checking outputs of fMRIPrep command: | mkdir -p /tmp/ds054/test - find /tmp/ds054/derivatives | sed s+/tmp/ds054/derivatives/++ | sort > /tmp/ds054/test/outputs.out + find /tmp/ds054/derivatives -path */figures -prune -o -name "*" -print | sed s+/tmp/ds054/derivatives/++ | sort > /tmp/ds054/test/outputs.out diff /tmp/src/fmriprep/.circleci/ds054_outputs.txt /tmp/ds054/test/outputs.out exit $? - run: @@ -487,24 +497,29 @@ jobs: fmriprep-docker -i poldracklab/fmriprep:latest \ --config $PWD/nipype.cfg -w /tmp/ds054/work \ /tmp/data/ds054 /tmp/ds054/derivatives participant \ - --fs-no-reconall --debug --write-graph --force-syn \ + --fs-no-reconall --debug --write-graph \ + --ignore-aroma-denoising-errors --use-aroma \ --output-space T1w template \ + --template-resampling-grid 2mm \ --reports-only --run-uuid $UUID RET=$? set -e [[ "$RET" -eq "1" ]] - run: - name: Clean-up work work directory + name: Clean-up work directory + when: always command: | - sudo find /tmp/ds054/work -not -name "*.svg" -not -name "*.html" -not -name "*.rst" \ + sudo chown $(id -un):$(id -gn) -R /tmp/ds054 + find /tmp/ds054/work -not -name "*.svg" -not -name "*.html" -not -name "*.rst" \ -not -name "*.mat" -not -name "*.lta" -type f -delete + # tar cf - work/ | pigz -2 -p 2 > ds054_workdir.tar.gz && sudo rm -fr work - store_artifacts: path: /tmp/ds054 ds210: machine: image: circleci/classic:201711-01 - working_directory: /tmp/ds000210 + working_directory: /tmp/ds210 environment: - FS_LICENSE: /tmp/fslicense/license.txt steps: @@ -522,12 +537,12 @@ jobs: at: /tmp - restore_cache: keys: - - ds000210-anat-v2-{{ epoch }} - - ds000210-anat-v2- + - ds210-anat-v1-{{ epoch }} + - ds210-anat-v1- - run: name: Setting up test command: | - mkdir -p /tmp/ds000210/derivatives && sudo setfacl -d -m group:$(id -gn):rwx /tmp/ds000210/derivatives && sudo setfacl -m group:$(id -gn):rwx /tmp/ds000210/derivatives + mkdir -p /tmp/ds210/derivatives && sudo setfacl -d -m group:$(id -gn):rwx /tmp/ds210/derivatives && sudo setfacl -m group:$(id -gn):rwx /tmp/ds210/derivatives pip install future numpy pip install --upgrade /tmp/src/fmriprep/wrapper/ - run: @@ -545,46 +560,49 @@ jobs: name: Run anatomical workflow on ds000210 no_output_timeout: 2h command: | - mkdir -p /tmp/ds000210/work /tmp/ds000210/derivatives - sudo setfacl -d -m group:$(id -gn):rwx /tmp/ds000210/derivatives && \ - sudo setfacl -m group:$(id -gn):rwx /tmp/ds000210/derivatives - sudo setfacl -d -m group:$(id -gn):rwx /tmp/ds000210/work && \ - sudo setfacl -m group:$(id -gn):rwx /tmp/ds000210/work + mkdir -p /tmp/ds210/work /tmp/ds210/derivatives + sudo setfacl -d -m group:$(id -gn):rwx /tmp/ds210/derivatives && \ + sudo setfacl -m group:$(id -gn):rwx /tmp/ds210/derivatives + sudo setfacl -d -m group:$(id -gn):rwx /tmp/ds210/work && \ + sudo setfacl -m group:$(id -gn):rwx /tmp/ds210/work fmriprep-docker -i poldracklab/fmriprep:latest \ - --config $PWD/nipype.cfg -w /tmp/ds000210/work \ - /tmp/data/ds000210 /tmp/ds000210/derivatives participant \ + --config $PWD/nipype.cfg -w /tmp/ds210/work \ + /tmp/data/ds210 /tmp/ds210/derivatives participant \ --fs-no-reconall --debug --write-graph \ --mem_mb 4096 --nthreads 2 --anat-only -vv - save_cache: - key: ds000210-anat-v2-{{ epoch }} + key: ds210-anat-v1-{{ epoch }} paths: - - /tmp/ds000210/work - - /tmp/ds000210/derivatives + - /tmp/ds210/work + - /tmp/ds210/derivatives - run: name: Run full fMRIPrep on ds000210 no_output_timeout: 2h command: | fmriprep-docker -i poldracklab/fmriprep:latest \ - --config $PWD/nipype.cfg -w /tmp/ds000210/work \ - /tmp/data/ds000210 /tmp/ds000210/derivatives participant \ + --config $PWD/nipype.cfg -w /tmp/ds210/work \ + /tmp/data/ds210 /tmp/ds210/derivatives participant \ --fs-no-reconall --t2s-coreg --use-syn-sdc \ --template-resampling-grid native \ --debug --write-graph --mem_mb 4096 --nthreads 2 -vv - run: name: Checking outputs of fMRIPrep command: | - mkdir -p /tmp/ds000210/test - find /tmp/ds000210/derivatives | sed s+/tmp/ds000210/derivatives/++ | sort > /tmp/ds000210/test/outputs.out - diff /tmp/src/fmriprep/.circleci/ds000210_outputs.txt /tmp/ds000210/test/outputs.out + mkdir -p /tmp/ds210/test + find /tmp/ds210/derivatives -path */figures -prune -o -name "*" -print | sed s+/tmp/ds210/derivatives/++ | sort > /tmp/ds210/test/outputs.out + diff /tmp/src/fmriprep/.circleci/ds210_outputs.txt /tmp/ds210/test/outputs.out exit $? - run: - name: Clean-up work work directory + name: Clean-up work directory + when: always command: | - sudo find /tmp/ds000210/work -not -name "*.svg" -not -name "*.html" -not -name "*.rst" \ + sudo chown $(id -un):$(id -gn) -R /tmp/ds210 + find /tmp/ds210/work -not -name "*.svg" -not -name "*.html" -not -name "*.rst" \ -not -name "*.mat" -not -name "*.lta" -type f -delete + # tar cf - work/ | pigz -2 -p 2 > ds054_workdir.tar.gz && sudo rm -fr work - store_artifacts: - path: /tmp/ds000210 + path: /tmp/ds210 deploy: machine: diff --git a/.circleci/ds005_outputs.txt b/.circleci/ds005_outputs.txt index c16f32d7f..7ff6e4444 100644 --- a/.circleci/ds005_outputs.txt +++ b/.circleci/ds005_outputs.txt @@ -28,43 +28,25 @@ fmriprep/sub-01/anat/sub-01_T1w_space-MNI152NLin2009cAsym_target-T1w_warp.h5 fmriprep/sub-01/anat/sub-01_T1w_space-orig_target-T1w_affine.txt fmriprep/sub-01/anat/sub-01_T1w_target-fsnative_affine.txt fmriprep/sub-01/anat/sub-01_T1w_target-MNI152NLin2009cAsym_warp.h5 -fmriprep/sub-01/figures -fmriprep/sub-01/figures/sub-01_T1w_reconall.svg -fmriprep/sub-01/figures/sub-01_T1w_seg_brainmask.svg -fmriprep/sub-01/figures/sub-01_T1w_t1_2_mni.svg -fmriprep/sub-01/figures/sub-01_task-mixedgamblestask_run-01_bold_bbr.svg -fmriprep/sub-01/figures/sub-01_task-mixedgamblestask_run-01_bold_ica_aroma.svg -fmriprep/sub-01/figures/sub-01_task-mixedgamblestask_run-01_bold_rois.svg -fmriprep/sub-01/figures/sub-01_task-mixedgamblestask_run-01_bold_sdc_syn.svg -fmriprep/sub-01/figures/sub-01_task-mixedgamblestask_run-02_bold_bbr.svg -fmriprep/sub-01/figures/sub-01_task-mixedgamblestask_run-02_bold_ica_aroma.svg -fmriprep/sub-01/figures/sub-01_task-mixedgamblestask_run-02_bold_rois.svg -fmriprep/sub-01/figures/sub-01_task-mixedgamblestask_run-02_bold_sdc_syn.svg fmriprep/sub-01/func -fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_AROMAnoiseICs.csv fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_confounds.tsv -fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_MELODICmix.tsv fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-cifti_variant-space1_preproc.dtseries.json fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-cifti_variant-space1_preproc.dtseries.nii fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-fsaverage5.L.func.gii fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-fsaverage5.R.func.gii fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-MNI152NLin2009cAsym_preproc.nii.gz -fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-MNI152NLin2009cAsym_variant-smoothAROMAnonaggr_preproc.nii.gz fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-T1w_brainmask.nii.gz fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-T1w_label-aparcaseg_roi.nii.gz fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-T1w_label-aseg_roi.nii.gz fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-T1w_preproc.nii.gz -fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_AROMAnoiseICs.csv fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_confounds.tsv -fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_MELODICmix.tsv fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-cifti_variant-space1_preproc.dtseries.json fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-cifti_variant-space1_preproc.dtseries.nii fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-fsaverage5.L.func.gii fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-fsaverage5.R.func.gii fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-MNI152NLin2009cAsym_preproc.nii.gz -fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-MNI152NLin2009cAsym_variant-smoothAROMAnonaggr_preproc.nii.gz fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-T1w_brainmask.nii.gz fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-T1w_label-aparcaseg_roi.nii.gz fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold_space-T1w_label-aseg_roi.nii.gz diff --git a/.circleci/ds005_partial_outputs.txt b/.circleci/ds005_partial_outputs.txt index b60417fdd..92c4a8f4c 100644 --- a/.circleci/ds005_partial_outputs.txt +++ b/.circleci/ds005_partial_outputs.txt @@ -28,29 +28,14 @@ fmriprep/sub-01/anat/sub-01_T1w_space-MNI152NLin2009cAsym_target-T1w_warp.h5 fmriprep/sub-01/anat/sub-01_T1w_space-orig_target-T1w_affine.txt fmriprep/sub-01/anat/sub-01_T1w_target-fsnative_affine.txt fmriprep/sub-01/anat/sub-01_T1w_target-MNI152NLin2009cAsym_warp.h5 -fmriprep/sub-01/figures -fmriprep/sub-01/figures/sub-01_T1w_reconall.svg -fmriprep/sub-01/figures/sub-01_T1w_seg_brainmask.svg -fmriprep/sub-01/figures/sub-01_T1w_t1_2_mni.svg -fmriprep/sub-01/figures/sub-01_task-mixedgamblestask_run-01_bold_bbr.svg -fmriprep/sub-01/figures/sub-01_task-mixedgamblestask_run-01_bold_ica_aroma.svg -fmriprep/sub-01/figures/sub-01_task-mixedgamblestask_run-01_bold_rois.svg -fmriprep/sub-01/figures/sub-01_task-mixedgamblestask_run-01_bold_sdc_syn.svg -fmriprep/sub-01/figures/sub-01_task-mixedgamblestask_run-02_bold_bbr.svg -fmriprep/sub-01/figures/sub-01_task-mixedgamblestask_run-02_bold_ica_aroma.svg -fmriprep/sub-01/figures/sub-01_task-mixedgamblestask_run-02_bold_rois.svg -fmriprep/sub-01/figures/sub-01_task-mixedgamblestask_run-02_bold_sdc_syn.svg fmriprep/sub-01/func -fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_AROMAnoiseICs.csv fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_confounds.tsv -fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_MELODICmix.tsv fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-cifti_variant-space1_preproc.dtseries.json fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-cifti_variant-space1_preproc.dtseries.nii fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-fsaverage5.L.func.gii fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-fsaverage5.R.func.gii fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-MNI152NLin2009cAsym_preproc.nii.gz -fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-MNI152NLin2009cAsym_variant-smoothAROMAnonaggr_preproc.nii.gz fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-T1w_brainmask.nii.gz fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-T1w_label-aparcaseg_roi.nii.gz fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold_space-T1w_label-aseg_roi.nii.gz diff --git a/.circleci/ds054_outputs.txt b/.circleci/ds054_outputs.txt index 98dd3f784..621d4b95d 100644 --- a/.circleci/ds054_outputs.txt +++ b/.circleci/ds054_outputs.txt @@ -17,31 +17,21 @@ fmriprep/sub-100185/anat/sub-100185_T1w_space-MNI152NLin2009cAsym_preproc.nii.gz fmriprep/sub-100185/anat/sub-100185_T1w_space-MNI152NLin2009cAsym_target-T1w_warp.h5 fmriprep/sub-100185/anat/sub-100185_T1w_space-orig_target-T1w_affine.txt fmriprep/sub-100185/anat/sub-100185_T1w_target-MNI152NLin2009cAsym_warp.h5 -fmriprep/sub-100185/figures -fmriprep/sub-100185/figures/sub-100185_phasediff_fmap_mask.svg -fmriprep/sub-100185/figures/sub-100185_T1w_seg_brainmask.svg -fmriprep/sub-100185/figures/sub-100185_T1w_t1_2_mni.svg -fmriprep/sub-100185/figures/sub-100185_task-machinegame_run-01_bold_flt_bbr.svg -fmriprep/sub-100185/figures/sub-100185_task-machinegame_run-01_bold_fmap_reg.svg -fmriprep/sub-100185/figures/sub-100185_task-machinegame_run-01_bold_fmap_reg_vsm.svg -fmriprep/sub-100185/figures/sub-100185_task-machinegame_run-01_bold_forcedsyn.svg -fmriprep/sub-100185/figures/sub-100185_task-machinegame_run-01_bold_rois.svg -fmriprep/sub-100185/figures/sub-100185_task-machinegame_run-01_bold_sdc_phasediff.svg -fmriprep/sub-100185/figures/sub-100185_task-machinegame_run-02_bold_flt_bbr.svg -fmriprep/sub-100185/figures/sub-100185_task-machinegame_run-02_bold_fmap_reg.svg -fmriprep/sub-100185/figures/sub-100185_task-machinegame_run-02_bold_fmap_reg_vsm.svg -fmriprep/sub-100185/figures/sub-100185_task-machinegame_run-02_bold_forcedsyn.svg -fmriprep/sub-100185/figures/sub-100185_task-machinegame_run-02_bold_rois.svg -fmriprep/sub-100185/figures/sub-100185_task-machinegame_run-02_bold_sdc_phasediff.svg fmriprep/sub-100185/func +fmriprep/sub-100185/func/sub-100185_task-machinegame_run-01_bold_AROMAnoiseICs.csv fmriprep/sub-100185/func/sub-100185_task-machinegame_run-01_bold_confounds.tsv +fmriprep/sub-100185/func/sub-100185_task-machinegame_run-01_bold_MELODICmix.tsv fmriprep/sub-100185/func/sub-100185_task-machinegame_run-01_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz fmriprep/sub-100185/func/sub-100185_task-machinegame_run-01_bold_space-MNI152NLin2009cAsym_preproc.nii.gz +fmriprep/sub-100185/func/sub-100185_task-machinegame_run-01_bold_space-MNI152NLin2009cAsym_variant-smoothAROMAnonaggr_preproc.nii.gz fmriprep/sub-100185/func/sub-100185_task-machinegame_run-01_bold_space-T1w_brainmask.nii.gz fmriprep/sub-100185/func/sub-100185_task-machinegame_run-01_bold_space-T1w_preproc.nii.gz +fmriprep/sub-100185/func/sub-100185_task-machinegame_run-02_bold_AROMAnoiseICs.csv fmriprep/sub-100185/func/sub-100185_task-machinegame_run-02_bold_confounds.tsv +fmriprep/sub-100185/func/sub-100185_task-machinegame_run-02_bold_MELODICmix.tsv fmriprep/sub-100185/func/sub-100185_task-machinegame_run-02_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz fmriprep/sub-100185/func/sub-100185_task-machinegame_run-02_bold_space-MNI152NLin2009cAsym_preproc.nii.gz +fmriprep/sub-100185/func/sub-100185_task-machinegame_run-02_bold_space-MNI152NLin2009cAsym_variant-smoothAROMAnonaggr_preproc.nii.gz fmriprep/sub-100185/func/sub-100185_task-machinegame_run-02_bold_space-T1w_brainmask.nii.gz fmriprep/sub-100185/func/sub-100185_task-machinegame_run-02_bold_space-T1w_preproc.nii.gz fmriprep/sub-100185.html diff --git a/.circleci/ds000210_outputs.txt b/.circleci/ds210_outputs.txt similarity index 83% rename from .circleci/ds000210_outputs.txt rename to .circleci/ds210_outputs.txt index 16b89e99d..b386c39e6 100644 --- a/.circleci/ds000210_outputs.txt +++ b/.circleci/ds210_outputs.txt @@ -17,12 +17,6 @@ fmriprep/sub-02/anat/sub-02_T1w_space-MNI152NLin2009cAsym_preproc.nii.gz fmriprep/sub-02/anat/sub-02_T1w_space-MNI152NLin2009cAsym_target-T1w_warp.h5 fmriprep/sub-02/anat/sub-02_T1w_space-orig_target-T1w_affine.txt fmriprep/sub-02/anat/sub-02_T1w_target-MNI152NLin2009cAsym_warp.h5 -fmriprep/sub-02/figures -fmriprep/sub-02/figures/sub-02_T1w_seg_brainmask.svg -fmriprep/sub-02/figures/sub-02_T1w_t1_2_mni.svg -fmriprep/sub-02/figures/sub-02_task-cuedSGT_run-01_echo-1_bold_flirt.svg -fmriprep/sub-02/figures/sub-02_task-cuedSGT_run-01_echo-1_bold_rois.svg -fmriprep/sub-02/figures/sub-02_task-cuedSGT_run-01_echo-1_bold_sdc_syn.svg fmriprep/sub-02/func fmriprep/sub-02/func/sub-02_task-cuedSGT_run-01_echo-1_bold_confounds.tsv fmriprep/sub-02/func/sub-02_task-cuedSGT_run-01_echo-1_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz @@ -34,4 +28,4 @@ fmriprep/sub-02/func/sub-02_task-cuedSGT_run-01_echo-3_bold_confounds.tsv fmriprep/sub-02/func/sub-02_task-cuedSGT_run-01_echo-3_bold_space-MNI152NLin2009cAsym_brainmask.nii.gz fmriprep/sub-02/func/sub-02_task-cuedSGT_run-01_echo-3_bold_space-MNI152NLin2009cAsym_preproc.nii.gz fmriprep/sub-02.html -/tmp/ds000210/derivatives +/tmp/ds210/derivatives