diff --git a/fmriprep/interfaces/resampling.py b/fmriprep/interfaces/resampling.py
index 6111623cb..545f82986 100644
--- a/fmriprep/interfaces/resampling.py
+++ b/fmriprep/interfaces/resampling.py
@@ -588,6 +588,8 @@ def resample_image(
     )
     resampled_img = nb.Nifti1Image(resampled_data, target.affine, target.header)
     resampled_img.set_data_dtype('f4')
+    # Preserve zooms of additional dimensions
+    resampled_img.header.set_zooms(target.header.get_zooms()[:3] + source.header.get_zooms()[3:])
 
     return resampled_img