diff --git a/dockereve-master/eve-app/settings.py b/dockereve-master/eve-app/settings.py index ba9428e..0f0e8b5 100644 --- a/dockereve-master/eve-app/settings.py +++ b/dockereve-master/eve-app/settings.py @@ -42,7 +42,7 @@ 'InversionTime': {'type': 'float'}, 'MRAcquisitionType': {'type': 'string'}, 'MRTransmitCoilSequence': {'type': 'string'}, - 'MagneticFieldStrength': {'type': 'integer'}, + 'MagneticFieldStrength': {'type': 'float'}, 'Manufacturer': {'type': 'string'}, 'ManufacturersModelName': {'type': 'string'}, 'MatrixCoilMode': {'type': 'string'}, diff --git a/test/T1w/missingField/sub-10159_T1w.json b/test/T1w/missingField/sub-10159_T1w.json index ff55cdb..d21c54d 100755 --- a/test/T1w/missingField/sub-10159_T1w.json +++ b/test/T1w/missingField/sub-10159_T1w.json @@ -1,94 +1,94 @@ { - "snr_wm": 11.248504688892124, - "summary_bg_p95": 12.0, - "InversionTime": 1.1, - "fber": 26.33627700805664, - "DeviceSerialNumber": "35343", - "snrd_csf": 26.613233468186966, - "InPlanePhaseEncodingDirection": "ROW", - "summary_csf_stdv": 32.83399963378906, - "snrd_gm": 44.12607332564048, - "size_x": 176, - "size_y": 256, - "size_z": 256, - "AcquisitionMatrix": "0/256/256/0", - "ProtocolName": "MPRAGE - BWM", - "summary_csf_p05": 68.0, - "icvs_wm": 0.3610708502595193, - "RepetitionTime": 2.53, - "summary_wm_stdv": 35.2022590637207, - "snrd_wm": 60.80321593566894, - "MagneticFieldStrength": 3, - "TotalScanTimeSec": 363, - "MRAcquisitionType": "3D", - "snr_total": 7.911386668025524, - "icvs_gm": 0.3959101040697155, - "summary_gm_mean": 211.44973754882812, - "rpve_csf": 83261.9375, - "tpm_overlap_wm": 0.5890556573867798, - "snrd_total": 43.8475075764988, - "PixelBandwidth": 200, - "ScanningSequence": "GR/IR", - "summary_csf_p95": 170.0, - "spacing_x": 1.0, - "FlipAngle": 7, - "summary_gm_k": -0.6324611944326, - "snr_gm": 8.794440881363833, - "icvs_csf": 0.2430190456707652, - "PatientPosition": "HFS", - "SequenceName": "*tfl3d1_ns", + "snr_wm": 11.248504688892124, + "summary_bg_p95": 12.0, + "InversionTime": 1.1, + "fber": 26.33627700805664, + "DeviceSerialNumber": "35343", + "snrd_csf": 26.613233468186966, + "InPlanePhaseEncodingDirection": "ROW", + "summary_csf_stdv": 32.83399963378906, + "snrd_gm": 44.12607332564048, + "size_x": 176, + "size_y": 256, + "size_z": 256, + "AcquisitionMatrix": "0/256/256/0", + "ProtocolName": "MPRAGE - BWM", + "summary_csf_p05": 68.0, + "icvs_wm": 0.3610708502595193, + "RepetitionTime": 2.53, + "summary_wm_stdv": 35.2022590637207, + "snrd_wm": 60.80321593566894, + "MagneticFieldStrength": 3.0, + "TotalScanTimeSec": 363, + "MRAcquisitionType": "3D", + "snr_total": 7.911386668025524, + "icvs_gm": 0.3959101040697155, + "summary_gm_mean": 211.44973754882812, + "rpve_csf": 83261.9375, + "tpm_overlap_wm": 0.5890556573867798, + "snrd_total": 43.8475075764988, + "PixelBandwidth": 200, + "ScanningSequence": "GR/IR", + "summary_csf_p95": 170.0, + "spacing_x": 1.0, + "FlipAngle": 7, + "summary_gm_k": -0.6324611944326, + "snr_gm": 8.794440881363833, + "icvs_csf": 0.2430190456707652, + "PatientPosition": "HFS", + "SequenceName": "*tfl3d1_ns", "summary_bg_p05": 0.0, - "qi_2": 0.0042996791690604694, - "qi_1": 5.289201412128623e-06, - "ImagingFrequency": 123249959, - "AccelerationFactorPE": 2, - "md5sum": "75cab8005361c2504ba5a7f02ecbacd7", - "ScanOptions": "IR", - "summary_csf_k": 2.800222210830917, - "wm2max": 0.6761487964989059, - "fwhm_z": 3.22984, - "fwhm_y": 3.70268, - "fwhm_x": 3.50783, - "summary_gm_p05": 167.0, - "inu_range": 0.35875076055526733, - "spacing_z": 1.0, - "spacing_y": 1.0, - "rpve_gm": 152862.53125, - "NumberOfAverages": 1, - "summary_wm_p05": 255.0, - "PhaseEncodingDirection": "i-", - "TransmitCoilName": "Body", - "modality": "T1w", - "AccelNumReferenceLines": 32, - "PercentPhaseFieldOfView": 100, - "cnr": 11.335847854614258, - "subject_id": "10159", - "inu_med": 1.2151005268096924, - "EchoTrainLength": 1, - "version": "99.99.99", - "VariableFlipAngleFlag": "N", - "efc": 0.47647998100292316, - "summary_wm_mean": 309.4393005371094, - "summary_bg_stdv": 4.799960136413574, - "summary_bg_k": 177.84711440664685, - "mriqc_pred": 1, - "ReceiveCoilName": "HeadMatrix", - "PercentSampling": 100, - "ManufacturerModelName": "TrioTim", - "summary_gm_p95": 260.0, - "EchoTime": 0.00331, - "fwhm_avg": 3.47466, - "rpve_wm": 82412.921875, - "SequenceVariant": "SP/MP", - "tpm_overlap_gm": 0.479917049407959, - "summary_csf_mean": 126.74657440185547, - "summary_bg_mean": 4.691673278808594, - "summary_wm_p95": 368.0, - "snr_csf": 3.691214433820612, - "NumberOfPhaseEncodingSteps": 255, - "summary_gm_stdv": 28.741302490234375, - "SoftwareVersions": "syngo MR B15", - "tpm_overlap_csf": 0.21703721582889557, - "summary_wm_k": -0.15745795522916461, + "qi_2": 0.0042996791690604694, + "qi_1": 5.289201412128623e-06, + "ImagingFrequency": 123249959, + "AccelerationFactorPE": 2, + "md5sum": "75cab8005361c2504ba5a7f02ecbacd7", + "ScanOptions": "IR", + "summary_csf_k": 2.800222210830917, + "wm2max": 0.6761487964989059, + "fwhm_z": 3.22984, + "fwhm_y": 3.70268, + "fwhm_x": 3.50783, + "summary_gm_p05": 167.0, + "inu_range": 0.35875076055526733, + "spacing_z": 1.0, + "spacing_y": 1.0, + "rpve_gm": 152862.53125, + "NumberOfAverages": 1, + "summary_wm_p05": 255.0, + "PhaseEncodingDirection": "i-", + "TransmitCoilName": "Body", + "modality": "T1w", + "AccelNumReferenceLines": 32, + "PercentPhaseFieldOfView": 100, + "cnr": 11.335847854614258, + "subject_id": "10159", + "inu_med": 1.2151005268096924, + "EchoTrainLength": 1, + "version": "99.99.99", + "VariableFlipAngleFlag": "N", + "efc": 0.47647998100292316, + "summary_wm_mean": 309.4393005371094, + "summary_bg_stdv": 4.799960136413574, + "summary_bg_k": 177.84711440664685, + "mriqc_pred": 1, + "ReceiveCoilName": "HeadMatrix", + "PercentSampling": 100, + "ManufacturerModelName": "TrioTim", + "summary_gm_p95": 260.0, + "EchoTime": 0.00331, + "fwhm_avg": 3.47466, + "rpve_wm": 82412.921875, + "SequenceVariant": "SP/MP", + "tpm_overlap_gm": 0.479917049407959, + "summary_csf_mean": 126.74657440185547, + "summary_bg_mean": 4.691673278808594, + "summary_wm_p95": 368.0, + "snr_csf": 3.691214433820612, + "NumberOfPhaseEncodingSteps": 255, + "summary_gm_stdv": 28.741302490234375, + "SoftwareVersions": "syngo MR B15", + "tpm_overlap_csf": 0.21703721582889557, + "summary_wm_k": -0.15745795522916461, "software": "mriqc" } \ No newline at end of file diff --git a/test/bold/validData/sub-ds205s03_task-functionallocalizer_run-01_bold.json b/test/bold/validData/sub-ds205s03_task-functionallocalizer_run-01_bold.json index 27ffafa..2708a63 100644 --- a/test/bold/validData/sub-ds205s03_task-functionallocalizer_run-01_bold.json +++ b/test/bold/validData/sub-ds205s03_task-functionallocalizer_run-01_bold.json @@ -4,7 +4,7 @@ "bids_meta": { "EchoTime": 0.035, "FlipAngle": 90, - "MagneticFieldStrength": 3, + "MagneticFieldStrength": 3.0, "Manufacturer": "Siemens", "ManufacturersModelName": "Magnetom Trio", "PulseSequenceType": "single-shot echo-planar", diff --git a/test/bold/validData/sub-ds205s03_task-view_run-01_bold.json b/test/bold/validData/sub-ds205s03_task-view_run-01_bold.json index 9cf2560..146dfc4 100644 --- a/test/bold/validData/sub-ds205s03_task-view_run-01_bold.json +++ b/test/bold/validData/sub-ds205s03_task-view_run-01_bold.json @@ -4,7 +4,7 @@ "bids_meta": { "EchoTime": 0.035, "FlipAngle": 90, - "MagneticFieldStrength": 3, + "MagneticFieldStrength": 3.0, "Manufacturer": "Siemens", "ManufacturersModelName": "Magnetom Trio", "PulseSequenceType": "single-shot echo-planar", diff --git a/test/bold/validData/sub-ds205s03_task-view_run-02_bold.json b/test/bold/validData/sub-ds205s03_task-view_run-02_bold.json index e7b1930..f33369a 100644 --- a/test/bold/validData/sub-ds205s03_task-view_run-02_bold.json +++ b/test/bold/validData/sub-ds205s03_task-view_run-02_bold.json @@ -4,7 +4,7 @@ "bids_meta": { "EchoTime": 0.035, "FlipAngle": 90, - "MagneticFieldStrength": 3, + "MagneticFieldStrength": 3.0, "Manufacturer": "Siemens", "ManufacturersModelName": "Magnetom Trio", "PulseSequenceType": "single-shot echo-planar", diff --git a/test/bold/validData/sub-ds205s07_task-functionallocalizer_run-01_bold.json b/test/bold/validData/sub-ds205s07_task-functionallocalizer_run-01_bold.json index 6f43efd..f7741b9 100644 --- a/test/bold/validData/sub-ds205s07_task-functionallocalizer_run-01_bold.json +++ b/test/bold/validData/sub-ds205s07_task-functionallocalizer_run-01_bold.json @@ -4,7 +4,7 @@ "bids_meta": { "EchoTime": 0.035, "FlipAngle": 90, - "MagneticFieldStrength": 3, + "MagneticFieldStrength": 3.0, "Manufacturer": "Siemens", "ManufacturersModelName": "Magnetom Trio", "PulseSequenceType": "single-shot echo-planar", diff --git a/test/bold/validData/sub-ds205s07_task-view_run-01_bold.json b/test/bold/validData/sub-ds205s07_task-view_run-01_bold.json index eee174f..f7a3636 100644 --- a/test/bold/validData/sub-ds205s07_task-view_run-01_bold.json +++ b/test/bold/validData/sub-ds205s07_task-view_run-01_bold.json @@ -4,7 +4,7 @@ "bids_meta": { "EchoTime": 0.035, "FlipAngle": 90, - "MagneticFieldStrength": 3, + "MagneticFieldStrength": 3.0, "Manufacturer": "Siemens", "ManufacturersModelName": "Magnetom Trio", "PulseSequenceType": "single-shot echo-planar", diff --git a/test/bold/validData/sub-ds205s07_task-view_run-02_bold.json b/test/bold/validData/sub-ds205s07_task-view_run-02_bold.json index e4574f7..e41041d 100644 --- a/test/bold/validData/sub-ds205s07_task-view_run-02_bold.json +++ b/test/bold/validData/sub-ds205s07_task-view_run-02_bold.json @@ -4,7 +4,7 @@ "bids_meta": { "EchoTime": 0.035, "FlipAngle": 90, - "MagneticFieldStrength": 3, + "MagneticFieldStrength": 3.0, "Manufacturer": "Siemens", "ManufacturersModelName": "Magnetom Trio", "PulseSequenceType": "single-shot echo-planar", diff --git a/test/bold/validData/sub-ds205s09_task-view_acq-LR_run-01_bold.json b/test/bold/validData/sub-ds205s09_task-view_acq-LR_run-01_bold.json index 491c7b6..ddf3550 100644 --- a/test/bold/validData/sub-ds205s09_task-view_acq-LR_run-01_bold.json +++ b/test/bold/validData/sub-ds205s09_task-view_acq-LR_run-01_bold.json @@ -4,7 +4,7 @@ "bids_meta": { "EchoTime": 0.035, "FlipAngle": 90, - "MagneticFieldStrength": 3, + "MagneticFieldStrength": 3.0, "Manufacturer": "Siemens", "ManufacturersModelName": "Magnetom Trio", "PulseSequenceType": "single-shot echo-planar", diff --git a/test/bold/validData/sub-ds205s09_task-view_acq-LR_run-02_bold.json b/test/bold/validData/sub-ds205s09_task-view_acq-LR_run-02_bold.json index 8f4a624..b771aa9 100644 --- a/test/bold/validData/sub-ds205s09_task-view_acq-LR_run-02_bold.json +++ b/test/bold/validData/sub-ds205s09_task-view_acq-LR_run-02_bold.json @@ -4,7 +4,7 @@ "bids_meta": { "EchoTime": 0.035, "FlipAngle": 90, - "MagneticFieldStrength": 3, + "MagneticFieldStrength": 3.0, "Manufacturer": "Siemens", "ManufacturersModelName": "Magnetom Trio", "PulseSequenceType": "single-shot echo-planar", diff --git a/test/bold/validData/sub-ds205s09_task-view_acq-RL_run-01_bold.json b/test/bold/validData/sub-ds205s09_task-view_acq-RL_run-01_bold.json index f407a6c..4c04ba5 100644 --- a/test/bold/validData/sub-ds205s09_task-view_acq-RL_run-01_bold.json +++ b/test/bold/validData/sub-ds205s09_task-view_acq-RL_run-01_bold.json @@ -4,7 +4,7 @@ "bids_meta": { "EchoTime": 0.035, "FlipAngle": 90, - "MagneticFieldStrength": 3, + "MagneticFieldStrength": 3.0, "Manufacturer": "Siemens", "ManufacturersModelName": "Magnetom Trio", "PulseSequenceType": "single-shot echo-planar",