revising bioc review

noriakis · Aug 21, 2023 · 7cd7e44 · 7cd7e44
1 parent e95ab77
commit 7cd7e44
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Showing 3 changed files with 7 additions and 2 deletions.
diff --git a/R/ggkegg.R b/R/ggkegg.R
@@ -34,7 +34,7 @@
 #' @param numeric_attribute named vector for appending numeric attribute
 #' @param node_rect_nudge parameter for nudging the node rect
 #' @param group_rect_nudge parameter for nudging the group node rect
-#' @example
+#' @examples
 #' ## Use pathway ID to obtain `ggraph` object directly.
 #' g <- ggkegg("hsa04110")
 #' g + geom_node_rect()

diff --git a/R/module_functions.R b/R/module_functions.R
@@ -722,7 +722,7 @@ parse_module <- function(kmo) {
         }
         steps[[j]] <- current_step
         j <- j + 1
-        steps[sapply(steps, is.null)] <- NULL
+        steps[vapply(steps, is.null, FUN.VALUE=TRUE)] <- NULL
         return(steps)
     }
     ## Preallocate   

diff --git a/man/ggkegg.Rd b/man/ggkegg.Rd