From 6b0137f2047521cbb22a4b5b950c73a5e1811df6 Mon Sep 17 00:00:00 2001 From: Anoushka Date: Sat, 11 Dec 2021 14:01:34 -0500 Subject: [PATCH] auto --- .Rproj.user/7803476A/sources/prop/INDEX | 9 +++++++++ .Rproj.user/shared/notebooks/paths | 11 +++++++++-- .gitignore | 2 ++ 3 files changed, 20 insertions(+), 2 deletions(-) diff --git a/.Rproj.user/7803476A/sources/prop/INDEX b/.Rproj.user/7803476A/sources/prop/INDEX index 79cb513..cf553bf 100644 --- a/.Rproj.user/7803476A/sources/prop/INDEX +++ b/.Rproj.user/7803476A/sources/prop/INDEX @@ -1,5 +1,6 @@ ~%2FDocuments%2FMiscallaneous_2020%2FAutoCreateCV%2Fcv.rmd="81387FC9" ~%2FDocuments%2FTilgnerLab%2F2019%2F2019_11_06_53CompleteReads%2FLR_SR_Analysis.R="ADAF255" +~%2FDocuments%2FTilgnerLab%2F2019%2F2019_12_09_10XSpatial_HiDensity%2FHiDensity_SpatialProcessing.Rmd="7802F2D5" ~%2FDocuments%2FTilgnerLab%2F2020%2F2020_01_23_ExplainingDiffIsoExp_ExonsAndTSS%2FTSS.Iso.PolyA%2FGOrilla%2FReviGO%2FGNB_EN.r="8BF26559" ~%2FDocuments%2FTilgnerLab%2F2020%2F2020_01_23_ExplainingDiffIsoExp_ExonsAndTSS%2FTSS.Iso.PolyA%2FGOrilla%2FReviGO%2FGNB_EN_CC.r="19283159" ~%2FDocuments%2FTilgnerLab%2F2020%2F2020_01_23_ExplainingDiffIsoExp_ExonsAndTSS%2FTSS.Iso.PolyA%2FGOrilla%2FReviGO%2FGNB_EN_MF.r="4CD4EA18" @@ -8,7 +9,13 @@ ~%2FDocuments%2FTilgnerLab%2F2020%2F2020_01_23_ExplainingDiffIsoExp_ExonsAndTSS%2FTSS.Iso.PolyA%2FGOrilla%2FReviGO%2FREVIGO_RGL_NIPC.r="EC37CB45" ~%2FDocuments%2FTilgnerLab%2F2020%2F2020_01_23_ExplainingDiffIsoExp_ExonsAndTSS%2FTSS.Iso.PolyA%2FGOrilla%2FReviGO%2FREVIGO_RGL_NIPC_MF.r="552DCAF9" ~%2FDocuments%2FTilgnerLab%2F2020%2F2020_02_14_TrickleDownHippAndPFC%2FPlots%2FSankeyDiagram_Variations.R="80E19200" +~%2FDocuments%2FTilgnerLab%2F2020%2F2020_04_22_SpatialSeq_NewAndImproved%2FFunctions%2FGeomSpatial.R="3F044797" +~%2FDocuments%2FTilgnerLab%2F2020%2F2020_04_22_SpatialSeq_NewAndImproved%2FPlotGenesForSpatial.Rmd="9BA45239" +~%2FDocuments%2FTilgnerLab%2F2020%2F2020_04_22_SpatialSeq_NewAndImproved%2FPlotSpatial_SelectExons.R="EDE354F0" +~%2FDocuments%2FTilgnerLab%2F2020%2F2020_04_22_SpatialSeq_NewAndImproved%2FSpatialPlot_WithSpatialViz.R="9B727F8D" ~%2FDocuments%2FTilgnerLab%2F2020%2F2020_11_24_snisorSeq%2FshortRead_10X_analysis%2FintegrationAnchors.R="ADDD077A" +~%2FDocuments%2FTilgnerLab%2F2021%2F2021_09_08_HumanBrainAnalysis%2Fscripts%2FshortReadData%2FrScripts%2FgeneVariabilityForAltInHumanExons.R="B7BE0C9D" +~%2FDocuments%2FTilgnerLab%2F2021%2F2021_09_08_HumanBrainAnalysis%2Fscripts%2FshortReadData%2FrScripts%2FinitDataProcessing_integratingAllDatasets.R="FB952D04" ~%2FDocuments%2FTilgnerLab%2FGitLab%2Fscisorseqr%2F.Rbuildignore="C1B53321" ~%2FDocuments%2FTilgnerLab%2FGitLab%2Fscisorseqr%2F.Rhistory="71D8B366" ~%2FDocuments%2FTilgnerLab%2FGitLab%2Fscisorseqr%2F.gitignore="B0E29120" @@ -69,7 +76,9 @@ ~%2FDocuments%2FTilgnerLab%2FGitLab%2Fscisorseqr%2Fman%2FGetBarcodes.Rd="8602A888" ~%2FDocuments%2FTilgnerLab%2FGitLab%2Fscisorseqr%2Fman%2FIsoQuant.Rd="DA79FBBF" ~%2FDocuments%2FTilgnerLab%2FGitLab%2Fscisorseqr%2Fman%2Fpipe.Rd="3CAF10F3" +~%2FDocuments%2FTilgnerLab%2FGitLab%2Fscisorseqr%2Fman%2FtriHeatmap.Rd="492065BC" ~%2FDocuments%2FTilgnerLab%2FGitLab%2Fscisorseqr%2Fvignettes%2F.gitignore="83895C5D" +~%2FDocuments%2FTilgnerLab%2FGitLab%2Fscisorseqr%2Fvignettes%2Fmaking-sure.Rmd="6AD1F111" ~%2FDocuments%2FTilgnerLab%2FGitLab%2Fscisorseqr%2Fvignettes%2Fscisorseqr-StandardWorkflow.Rmd="778248D9" ~%2FDocuments%2FTilgnerLab%2FGitLab%2Fscisorseqr%2Fvignettes%2Fscisorseqr_standardWorkflow.Rmd="5E8CAD79" ~%2FDocuments%2FTilgnerLab%2FGitLab%2Fsl-iso-seq%2Fapp.R="DA3E3C43" diff --git a/.Rproj.user/shared/notebooks/paths b/.Rproj.user/shared/notebooks/paths index c55dad1..17c6340 100644 --- a/.Rproj.user/shared/notebooks/paths +++ b/.Rproj.user/shared/notebooks/paths @@ -1,11 +1,18 @@ 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+/Users/anoushkajoglekar/Documents/TilgnerLab/2021/2021_09_08_HumanBrainAnalysis/scripts/shortReadData/rScripts/initDataProcessing_integratingAllDatasets.R="EC4E1EBD" /Users/anoushkajoglekar/Documents/TilgnerLab/GitLab/scisorseqr/.Rbuildignore="E33BA6B" /Users/anoushkajoglekar/Documents/TilgnerLab/GitLab/scisorseqr/.Rhistory="10B183B7" /Users/anoushkajoglekar/Documents/TilgnerLab/GitLab/scisorseqr/.gitignore="E546622D" @@ -58,9 +65,9 @@ /Users/anoushkajoglekar/Documents/TilgnerLab/GitLab/scisorseqr/man/GetBarcodes.Rd="D37A096E" /Users/anoushkajoglekar/Documents/TilgnerLab/GitLab/scisorseqr/man/IsoQuant.Rd="16DFB01A" /Users/anoushkajoglekar/Documents/TilgnerLab/GitLab/scisorseqr/man/pipe.Rd="2F74F627" -/Users/anoushkajoglekar/Documents/TilgnerLab/GitLab/scisorseqr/vignettes/.gitignore="DA1192C0" +/Users/anoushkajoglekar/Documents/TilgnerLab/GitLab/scisorseqr/man/triHeatmap.Rd="52CFCDC2" +/Users/anoushkajoglekar/Documents/TilgnerLab/GitLab/scisorseqr/vignettes/making-sure.Rmd="3FD587B5" /Users/anoushkajoglekar/Documents/TilgnerLab/GitLab/scisorseqr/vignettes/scisorseqr-StandardWorkflow.Rmd="8AAE84EE" -/Users/anoushkajoglekar/Documents/TilgnerLab/GitLab/scisorseqr/vignettes/scisorseqr_standardWorkflow.Rmd="433555F0" /Users/anoushkajoglekar/Documents/TilgnerLab/GitLab/sl-iso-seq/app.R="A8ED935C" /Users/anoushkajoglekar/Documents/TilgnerLab/GitLab/spatialviz_extended/app.R="178834D1" /Users/anoushkajoglekar/ScISOrSeqR/man/LongReadInfo.Rd="D8221054" diff --git a/.gitignore b/.gitignore index ff7e002..1be9dad 100644 --- a/.gitignore +++ b/.gitignore @@ -5,3 +5,5 @@ doc Meta inst/doc +/doc/ +/Meta/