diff --git a/lib/init.js b/lib/init.js
index d34f92b882b32..e4bd20b7210e8 100644
--- a/lib/init.js
+++ b/lib/init.js
@@ -5,8 +5,8 @@ const initJson = require('init-package-json')
 const npa = require('npm-package-arg')
 const rpj = require('read-package-json-fast')
 const libexec = require('libnpmexec')
-const parseJSON = require('json-parse-even-better-errors')
 const mapWorkspaces = require('@npmcli/map-workspaces')
+const PackageJson = require('@npmcli/package-json')
 
 const getLocationMsg = require('./exec/get-workspace-location-msg.js')
 const BaseCommand = require('./base-command.js')
@@ -199,35 +199,16 @@ class Init extends BaseCommand {
       return
     }
 
-    let manifest
-    try {
-      manifest =
-        fs.readFileSync(resolve(this.npm.localPrefix, 'package.json'), 'utf-8')
-    } catch (error) {
-      throw new Error('package.json not found')
-    }
-
-    try {
-      manifest = parseJSON(manifest)
-    } catch (error) {
-      throw new Error(`Invalid package.json: ${error}`)
-    }
+    const pkgJson = await PackageJson.load(this.npm.localPrefix)
 
-    if (!manifest.workspaces)
-      manifest.workspaces = []
-
-    manifest.workspaces.push(relative(this.npm.localPrefix, workspacePath))
-
-    // format content
-    const {
-      [Symbol.for('indent')]: indent,
-      [Symbol.for('newline')]: newline,
-    } = manifest
-
-    const content = (JSON.stringify(manifest, null, indent) + '\n')
-      .replace(/\n/g, newline)
+    pkgJson.update({
+      workspaces: [
+        ...(pkgJson.content.workspaces || []),
+        relative(this.npm.localPrefix, workspacePath),
+      ],
+    })
 
-    fs.writeFileSync(resolve(this.npm.localPrefix, 'package.json'), content)
+    await pkgJson.save()
   }
 }
 
diff --git a/lib/set-script.js b/lib/set-script.js
index cd01e28b56b06..24e4d8f20f666 100644
--- a/lib/set-script.js
+++ b/lib/set-script.js
@@ -1,8 +1,7 @@
+const { resolve } = require('path')
 const log = require('npmlog')
-const fs = require('fs')
-const parseJSON = require('json-parse-even-better-errors')
 const rpj = require('read-package-json-fast')
-const { resolve } = require('path')
+const PackageJson = require('@npmcli/package-json')
 
 const BaseCommand = require('./base-command.js')
 class SetScript extends BaseCommand {
@@ -51,7 +50,7 @@ class SetScript extends BaseCommand {
 
   async setScript (args) {
     this.validate(args)
-    const warn = this.doSetScript(this.npm.localPrefix, args[0], args[1])
+    const warn = await this.doSetScript(this.npm.localPrefix, args[0], args[1])
     if (warn)
       log.warn('set-script', `Script "${args[0]}" was overwritten`)
   }
@@ -66,7 +65,7 @@ class SetScript extends BaseCommand {
 
     for (const [name, path] of this.workspaces) {
       try {
-        const warn = this.doSetScript(path, args[0], args[1])
+        const warn = await this.doSetScript(path, args[0], args[1])
         if (warn) {
           log.warn('set-script', `Script "${args[0]}" was overwritten`)
           log.warn(`  in workspace: ${name}`)
@@ -84,39 +83,28 @@ class SetScript extends BaseCommand {
   // returns a Boolean that will be true if
   // the requested script was overwritten
   // and false if it was set as a new script
-  doSetScript (path, name, value) {
-    // Set the script
-    let manifest
+  async doSetScript (path, name, value) {
     let warn = false
 
-    try {
-      manifest = fs.readFileSync(resolve(path, 'package.json'), 'utf-8')
-    } catch (error) {
-      throw new Error('package.json not found')
-    }
-
-    try {
-      manifest = parseJSON(manifest)
-    } catch (error) {
-      throw new Error(`Invalid package.json: ${error}`)
-    }
+    const pkgJson = await PackageJson.load(path)
+    const { scripts } = pkgJson.content
 
-    if (!manifest.scripts)
-      manifest.scripts = {}
+    const overwriting =
+      scripts
+        && scripts[name]
+        && scripts[name] !== value
 
-    if (manifest.scripts[name] && manifest.scripts[name] !== value)
+    if (overwriting)
       warn = true
-    manifest.scripts[name] = value
 
-    // format content
-    const {
-      [Symbol.for('indent')]: indent,
-      [Symbol.for('newline')]: newline,
-    } = manifest
+    pkgJson.update({
+      scripts: {
+        ...scripts,
+        [name]: value,
+      },
+    })
 
-    const content = (JSON.stringify(manifest, null, indent) + '\n')
-      .replace(/\n/g, newline)
-    fs.writeFileSync(resolve(path, 'package.json'), content)
+    await pkgJson.save()
 
     return warn
   }
diff --git a/node_modules/@npmcli/package-json/LICENSE b/node_modules/@npmcli/package-json/LICENSE
new file mode 100644
index 0000000000000..6a1f3708f6d70
--- /dev/null
+++ b/node_modules/@npmcli/package-json/LICENSE
@@ -0,0 +1,18 @@
+ISC License
+
+Copyright GitHub Inc.
+
+Permission to use, copy, modify, and/or distribute this
+software for any purpose with or without fee is hereby
+granted, provided that the above copyright notice and this
+permission notice appear in all copies.
+
+THE SOFTWARE IS PROVIDED "AS IS" AND NPM DISCLAIMS ALL
+WARRANTIES WITH REGARD TO THIS SOFTWARE INCLUDING ALL
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS. IN NO
+EVENT SHALL NPM BE LIABLE FOR ANY SPECIAL, DIRECT,
+INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES
+WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS,
+WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER
+TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE
+USE OR PERFORMANCE OF THIS SOFTWARE.
diff --git a/node_modules/@npmcli/package-json/lib/index.js b/node_modules/@npmcli/package-json/lib/index.js
new file mode 100644
index 0000000000000..87c3a63093688
--- /dev/null
+++ b/node_modules/@npmcli/package-json/lib/index.js
@@ -0,0 +1,106 @@
+const fs = require('fs')
+const promisify = require('util').promisify
+const readFile = promisify(fs.readFile)
+const writeFile = promisify(fs.writeFile)
+const { resolve } = require('path')
+const updateDeps = require('./update-dependencies.js')
+const updateScripts = require('./update-scripts.js')
+const updateWorkspaces = require('./update-workspaces.js')
+
+const parseJSON = require('json-parse-even-better-errors')
+
+const _filename = Symbol('filename')
+const _manifest = Symbol('manifest')
+const _readFileContent = Symbol('readFileContent')
+
+// a list of handy specialized helper functions that take
+// care of special cases that are handled by the npm cli
+const knownSteps = new Set([
+  updateDeps,
+  updateScripts,
+  updateWorkspaces,
+])
+
+// list of all keys that are handled by "knownSteps" helpers
+const knownKeys = new Set([
+  ...updateDeps.knownKeys,
+  'scripts',
+  'workspaces',
+])
+
+class PackageJson {
+  static async load (path) {
+    return await new PackageJson(path).load()
+  }
+
+  constructor (path) {
+    this[_filename] = resolve(path, 'package.json')
+    this[_manifest] = {}
+    this[_readFileContent] = ''
+  }
+
+  async load () {
+    try {
+      this[_readFileContent] =
+        await readFile(this[_filename], 'utf8')
+    } catch (err) {
+      throw new Error('package.json not found')
+    }
+
+    try {
+      this[_manifest] =
+        parseJSON(this[_readFileContent])
+    } catch (err) {
+      throw new Error(`Invalid package.json: ${err}`)
+    }
+
+    return this
+  }
+
+  get content () {
+    return this[_manifest]
+  }
+
+  update (content) {
+    // validates both current manifest and content param
+    const invalidContent =
+      typeof this[_manifest] !== 'object'
+        || typeof content !== 'object'
+    if (invalidContent) {
+      throw Object.assign(
+        new Error(`Can't update invalid package.json data`),
+        { code: 'EPACKAGEJSONUPDATE' }
+      )
+    }
+
+    for (const step of knownSteps)
+      this[_manifest] = step({ content, originalContent: this[_manifest] })
+
+    // unknown properties will just be overwitten
+    for (const [key, value] of Object.entries(content)) {
+      if (!knownKeys.has(key))
+        this[_manifest][key] = value
+    }
+
+    return this
+  }
+
+  async save () {
+    const {
+      [Symbol.for('indent')]: indent,
+      [Symbol.for('newline')]: newline,
+    } = this[_manifest]
+
+    const format = indent === undefined ? '  ' : indent
+    const eol = newline === undefined ? '\n' : newline
+    const fileContent = `${
+      JSON.stringify(this[_manifest], null, format)
+    }\n`
+      .replace(/\n/g, eol)
+
+    if (fileContent.trim() !== this[_readFileContent].trim())
+      return await writeFile(this[_filename], fileContent)
+  }
+}
+
+module.exports = PackageJson
diff --git a/node_modules/@npmcli/package-json/lib/update-dependencies.js b/node_modules/@npmcli/package-json/lib/update-dependencies.js
new file mode 100644
index 0000000000000..dac45a8bed7bf
--- /dev/null
+++ b/node_modules/@npmcli/package-json/lib/update-dependencies.js
@@ -0,0 +1,72 @@
+const depTypes = new Set([
+  'dependencies',
+  'optionalDependencies',
+  'devDependencies',
+  'peerDependencies',
+])
+
+// sort alphabetically all types of deps for a given package
+const orderDeps = (content) => {
+  for (const type of depTypes) {
+    if (content && content[type]) {
+      content[type] = Object.keys(content[type])
+        .sort((a, b) => a.localeCompare(b, 'en'))
+        .reduce((res, key) => {
+          res[key] = content[type][key]
+          return res
+        }, {})
+    }
+  }
+  return content
+}
+
+const updateDependencies = ({ content, originalContent }) => {
+  const pkg = orderDeps({
+    ...content,
+  })
+
+  // optionalDependencies don't need to be repeated in two places
+  if (pkg.dependencies) {
+    if (pkg.optionalDependencies) {
+      for (const name of Object.keys(pkg.optionalDependencies))
+        delete pkg.dependencies[name]
+    }
+  }
+
+  const result = { ...originalContent }
+
+  // loop through all types of dependencies and update package json pkg
+  for (const type of depTypes) {
+    if (pkg[type])
+      result[type] = pkg[type]
+
+    // prune empty type props from resulting object
+    const emptyDepType =
+      pkg[type]
+      && typeof pkg === 'object'
+      && Object.keys(pkg[type]).length === 0
+    if (emptyDepType)
+      delete result[type]
+  }
+
+  // if original package.json had dep in peerDeps AND deps, preserve that.
+  const { dependencies: origProd, peerDependencies: origPeer } =
+    originalContent || {}
+  const { peerDependencies: newPeer } = result
+  if (origProd && origPeer && newPeer) {
+    // we have original prod/peer deps, and new peer deps
+    // copy over any that were in both in the original
+    for (const name of Object.keys(origPeer)) {
+      if (origProd[name] !== undefined && newPeer[name] !== undefined) {
+        result.dependencies = result.dependencies || {}
+        result.dependencies[name] = newPeer[name]
+      }
+    }
+  }
+
+  return result
+}
+
+updateDependencies.knownKeys = depTypes
+
+module.exports = updateDependencies
diff --git a/node_modules/@npmcli/package-json/lib/update-scripts.js b/node_modules/@npmcli/package-json/lib/update-scripts.js
new file mode 100644
index 0000000000000..3a88d3e9a17a8
--- /dev/null
+++ b/node_modules/@npmcli/package-json/lib/update-scripts.js
@@ -0,0 +1,28 @@
+const updateScripts = ({ content, originalContent = {} }) => {
+  const newScripts = content.scripts
+
+  if (!newScripts)
+    return originalContent
+
+  // validate scripts content being appended
+  const hasInvalidScripts = () =>
+    Object.entries(newScripts)
+      .some(([key, value]) =>
+        typeof key !== 'string' || typeof value !== 'string')
+  if (hasInvalidScripts()) {
+    throw Object.assign(
+      new TypeError(
+        'package.json scripts should be a key-value pair of strings.'),
+      { code: 'ESCRIPTSINVALID' }
+    )
+  }
+
+  return {
+    ...originalContent,
+    scripts: {
+      ...newScripts,
+    },
+  }
+}
+
+module.exports = updateScripts
diff --git a/node_modules/@npmcli/package-json/lib/update-workspaces.js b/node_modules/@npmcli/package-json/lib/update-workspaces.js
new file mode 100644
index 0000000000000..207dd94a236d7
--- /dev/null
+++ b/node_modules/@npmcli/package-json/lib/update-workspaces.js
@@ -0,0 +1,25 @@
+const updateWorkspaces = ({ content, originalContent = {} }) => {
+  const newWorkspaces = content.workspaces
+
+  if (!newWorkspaces)
+    return originalContent
+
+  // validate workspaces content being appended
+  const hasInvalidWorkspaces = () =>
+    newWorkspaces.some(w => !(typeof w === 'string'))
+  if (!newWorkspaces.length || hasInvalidWorkspaces()) {
+    throw Object.assign(
+      new TypeError('workspaces should be an array of strings.'),
+      { code: 'EWORKSPACESINVALID' }
+    )
+  }
+
+  return {
+    ...originalContent,
+    workspaces: [
+      ...newWorkspaces,
+    ],
+  }
+}
+
+module.exports = updateWorkspaces
diff --git a/node_modules/@npmcli/package-json/package.json b/node_modules/@npmcli/package-json/package.json
new file mode 100644
index 0000000000000..8708ec5eb6fb1
--- /dev/null
+++ b/node_modules/@npmcli/package-json/package.json
@@ -0,0 +1,34 @@
+{
+  "name": "@npmcli/package-json",
+  "version": "1.0.1",
+  "description": "Programmatic API to update package.json",
+  "main": "lib/index.js",
+  "files": [
+    "lib"
+  ],
+  "scripts": {
+    "preversion": "npm test",
+    "postversion": "npm publish",
+    "prepublishOnly": "git push origin --follow-tags",
+    "snap": "tap",
+    "test": "tap",
+    "npmclilint": "npmcli-lint",
+    "lint": "npm run npmclilint -- \"lib/*.*js\" \"test/*.*js\"",
+    "lintfix": "npm run lint -- --fix",
+    "posttest": "npm run lint --",
+    "postsnap": "npm run lintfix --"
+  },
+  "keywords": [
+    "npm",
+    "oss"
+  ],
+  "author": "GitHub Inc.",
+  "license": "ISC",
+  "devDependencies": {
+    "@npmcli/lint": "^1.0.1",
+    "tap": "^15.0.9"
+  },
+  "dependencies": {
+    "json-parse-even-better-errors": "^2.3.1"
+  }
+}
diff --git a/package-lock.json b/package-lock.json
index e0cdaff12df0b..51092497e4cd2 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -85,6 +85,7 @@
         "@npmcli/arborist": "^2.6.3",
         "@npmcli/ci-detect": "^1.2.0",
         "@npmcli/config": "^2.2.0",
+        "@npmcli/package-json": "^1.0.1",
         "@npmcli/run-script": "^1.8.5",
         "abbrev": "~1.1.1",
         "ansicolors": "~0.3.2",
@@ -890,6 +891,14 @@
       "integrity": "sha512-yrJUe6reVMpktcvagumoqD9r08fH1iRo01gn1u0zoCApa9lnZGEigVKUd2hzsCId4gdtkZZIVscLhNxMECKgRg==",
       "inBundle": true
     },
+    "node_modules/@npmcli/package-json": {
+      "version": "1.0.1",
+      "resolved": "https://registry.npmjs.org/@npmcli/package-json/-/package-json-1.0.1.tgz",
+      "integrity": "sha512-y6jnu76E9C23osz8gEMBayZmaZ69vFOIk8vR1FJL/wbEJ54+9aVG9rLTjQKSXfgYZEr50nw1txBBFfBZZe+bYg==",
+      "dependencies": {
+        "json-parse-even-better-errors": "^2.3.1"
+      }
+    },
     "node_modules/@npmcli/promise-spawn": {
       "version": "1.3.2",
       "resolved": "https://registry.npmjs.org/@npmcli/promise-spawn/-/promise-spawn-1.3.2.tgz",
@@ -10980,6 +10989,14 @@
       "resolved": "https://registry.npmjs.org/@npmcli/node-gyp/-/node-gyp-1.0.2.tgz",
       "integrity": "sha512-yrJUe6reVMpktcvagumoqD9r08fH1iRo01gn1u0zoCApa9lnZGEigVKUd2hzsCId4gdtkZZIVscLhNxMECKgRg=="
     },
+    "@npmcli/package-json": {
+      "version": "1.0.1",
+      "resolved": "https://registry.npmjs.org/@npmcli/package-json/-/package-json-1.0.1.tgz",
+      "integrity": "sha512-y6jnu76E9C23osz8gEMBayZmaZ69vFOIk8vR1FJL/wbEJ54+9aVG9rLTjQKSXfgYZEr50nw1txBBFfBZZe+bYg==",
+      "requires": {
+        "json-parse-even-better-errors": "^2.3.1"
+      }
+    },
     "@npmcli/promise-spawn": {
       "version": "1.3.2",
       "resolved": "https://registry.npmjs.org/@npmcli/promise-spawn/-/promise-spawn-1.3.2.tgz",
diff --git a/package.json b/package.json
index 41015f44dc880..d292ee4ead129 100644
--- a/package.json
+++ b/package.json
@@ -56,6 +56,7 @@
     "@npmcli/arborist": "^2.6.3",
     "@npmcli/ci-detect": "^1.2.0",
     "@npmcli/config": "^2.2.0",
+    "@npmcli/package-json": "^1.0.1",
     "@npmcli/run-script": "^1.8.5",
     "abbrev": "~1.1.1",
     "ansicolors": "~0.3.2",
diff --git a/test/lib/init.js b/test/lib/init.js
index 9b32eabe2c82c..1cefb1fc9c8fd 100644
--- a/test/lib/init.js
+++ b/test/lib/init.js
@@ -431,8 +431,10 @@ t.test('workspaces', t => {
 
     const Init = t.mock('../../lib/init.js', {
       ...mocks,
-      'json-parse-even-better-errors': () => {
-        throw new Error('ERR')
+      '@npmcli/package-json': {
+        async load () {
+          throw new Error('ERR')
+        },
       },
     })
     const init = new Init(npm)
@@ -440,7 +442,7 @@ t.test('workspaces', t => {
     init.execWorkspaces([], ['a'], err => {
       t.match(
         err,
-        /Invalid package.json: Error: ERR/,
+        /ERR/,
         'should exit with error'
       )
       t.end()
@@ -452,30 +454,16 @@ t.test('workspaces', t => {
     // this avoids poluting test output with those logs
     console.log = noop
 
-    npm.localPrefix = t.testdir({
-      'package.json': JSON.stringify({
-        name: 'top-level',
-      }),
-    })
+    npm.localPrefix = t.testdir({})
 
-    const Init = t.mock('../../lib/init.js', {
-      ...mocks,
-      fs: {
-        statSync () {
-          return true
-        },
-        readFileSync () {
-          throw new Error('ERR')
-        },
-      },
-    })
+    const Init = require('../../lib/init.js')
     const init = new Init(npm)
 
     init.execWorkspaces([], ['a'], err => {
       t.match(
         err,
-        /package.json not found/,
-        'should exit with error'
+        { code: 'ENOENT' },
+        'should exit with missing package.json file error'
       )
       t.end()
     })
diff --git a/test/lib/set-script.js b/test/lib/set-script.js
index 8038e8db3eb7d..37ba9a1cc71a2 100644
--- a/test/lib/set-script.js
+++ b/test/lib/set-script.js
@@ -121,25 +121,6 @@ t.test('warns when overwriting', (t) => {
   })
 })
 
-t.test('provided indentation and eol is used', (t) => {
-  npm.localPrefix = t.testdir({
-    'package.json': JSON.stringify({
-      name: 'foo',
-    }, null, ' '.repeat(6)).replace(/\n/g, '\r\n'),
-  })
-
-  t.plan(3)
-  setScript.exec(['arg1', 'arg2'], (error) => {
-    t.equal(error, undefined)
-    // rather than checking every line's content
-    // we parse the result and verify the symbols match
-    const contents = fs.readFileSync(resolve(npm.localPrefix, 'package.json'))
-    const data = parseJSON(contents)
-    t.equal(data[Symbol.for('indent')], ' '.repeat(6), 'keeps indenting')
-    t.equal(data[Symbol.for('newline')], '\r\n', 'keeps newlines')
-  })
-})
-
 t.test('workspaces', (t) => {
   ERROR_OUTPUT.length = 0
   WARN_OUTPUT.length = 0
@@ -153,7 +134,7 @@ t.test('workspaces', (t) => {
       'package.json': '{}',
     },
     'workspace-b': {
-      'package.json': '"notjson"',
+      'package.json': '"notajsonobject"',
     },
     'workspace-c': {
       'package.json': JSON.stringify({
@@ -176,8 +157,8 @@ t.test('workspaces', (t) => {
     t.hasStrict(dataA, { scripts: { arg1: 'arg2' } }, 'defined the script')
 
     // workspace-b logged an error
-    t.match(ERROR_OUTPUT, [
-      ['set-script', `Cannot create property 'scripts' on string 'notjson'`],
+    t.strictSame(ERROR_OUTPUT, [
+      ['set-script', `Can't update invalid package.json data`],
       ['  in workspace: workspace-b'],
       [`  at location: ${resolve(npm.localPrefix, 'workspace-b')}`],
     ], 'logged workspace-b error')