From 8a8210f34960cf5b6fd3d153302696d1b08a1aed Mon Sep 17 00:00:00 2001
From: Frederic Tessier <ftessier@gmail.com>
Date: Fri, 2 Sep 2016 17:49:23 -0400
Subject: [PATCH] Go to application directory for pbsdsh batch mode

Go to the application directory before invoking PBS distributed shell
(pbsdsh) parallel runs, so that they can be launched from any location,
in particular from the home directory when submitting jobs remotely via
ssh.
---
 HEN_HOUSE/scripts/run_user_code_batch | 1 +
 1 file changed, 1 insertion(+)

diff --git a/HEN_HOUSE/scripts/run_user_code_batch b/HEN_HOUSE/scripts/run_user_code_batch
index bafeeb99d..0a81606ab 100755
--- a/HEN_HOUSE/scripts/run_user_code_batch
+++ b/HEN_HOUSE/scripts/run_user_code_batch
@@ -399,6 +399,7 @@ if test $egs_batch_system = "pbsdsh"; then
     fi
 
     # submit the following stdin script to qsub, which will invoke the run_pbsdsh_task script
+    cd $egs_home/$user_code
     $batch_command $batch_options $queue $other_args <<EOF
 #!/bin/sh
 #PBS -l procs=$n_parallel