From 979c9820b0d4c2f5047ec1b2fb6670212848a672 Mon Sep 17 00:00:00 2001 From: Ian Carroll Date: Fri, 12 Apr 2024 18:16:17 +0000 Subject: [PATCH 01/10] directly use python_cmr's temporal --- earthaccess/search.py | 81 +- poetry.lock | 1144 ++++++++++++++----------- pyproject.toml | 2 +- tests/unit/test_collection_queries.py | 9 +- tests/unit/test_granule_queries.py | 9 +- 5 files changed, 675 insertions(+), 570 deletions(-) diff --git a/earthaccess/search.py b/earthaccess/search.py index 335389fe..47931887 100644 --- a/earthaccess/search.py +++ b/earthaccess/search.py @@ -2,7 +2,6 @@ from inspect import getmembers, ismethod from typing import Any, List, Optional, Tuple, Type, Union -import dateutil.parser as parser # type: ignore import requests from cmr import CollectionQuery, GranuleQuery @@ -310,34 +309,24 @@ def daac(self, daac_short_name: str = "") -> Type[CollectionQuery]: def temporal( self, - date_from: Optional[Union[str, dt.datetime]] = None, - date_to: Optional[Union[str, dt.datetime]] = None, + date_from: Optional[Union[str, dt.date]] = None, + date_to: Optional[Union[str, dt.date]] = None, exclude_boundary: bool = False, ) -> Type[CollectionQuery]: - """Filter by an open or closed date range. Dates can be provided as datetime objects - or ISO 8601 formatted strings. Multiple ranges can be provided by successive calls - to this method before calling execute(). - - Parameters: - date_from (String or Datetime object): earliest date of temporal range - date_to (String or Datetime object): latest date of temporal range - exclude_boundary (Boolean): whether or not to exclude the date_from/to in the matched range. - """ - DEFAULT = dt.datetime(1979, 1, 1) - if date_from is not None and not isinstance(date_from, dt.datetime): - try: - date_from = parser.parse(date_from, default=DEFAULT).isoformat() + "Z" - except Exception: - print("The provided start date was not recognized") - date_from = "" - - if date_to is not None and not isinstance(date_to, dt.datetime): - try: - date_to = parser.parse(date_to, default=DEFAULT).isoformat() + "Z" - except Exception: - print("The provided end date was not recognized") - date_to = "" + """Filter by an open or closed date range. Dates can be provided as date objects + or ISO 8601 strings. Multiple ranges can be provided by successive method calls. + ???+ Tip + Giving `datetime.date(Y, M, D)` or `%Y-%m-%d` as the `date_to` parameter is inclusive + of the whole day (the time component is set to `23:59:59`). + Using `datetime.datetime(Y, M, D)` is different, because the time component defaults + to `00:00:00`. + + Parameters: + date_from (String or Date): start of temporal range + date_to (String or Date): end of temporal range + exclude_boundary (Boolean): whether to exclude the date_from and date_to in the matched range. + """ super().temporal(date_from, date_to, exclude_boundary) return self @@ -616,34 +605,24 @@ def debug(self, debug: bool = True) -> Type[GranuleQuery]: def temporal( self, - date_from: Optional[Union[str, dt.datetime]] = None, - date_to: Optional[Union[str, dt.datetime]] = None, + date_from: Optional[Union[str, dt.date]] = None, + date_to: Optional[Union[str, dt.date]] = None, exclude_boundary: bool = False, ) -> Type[GranuleQuery]: - """Filter by an open or closed date range. - Dates can be provided as a datetime objects or ISO 8601 formatted strings. Multiple - ranges can be provided by successive calls to this method before calling execute(). - - Parameters: - date_from: earliest date of temporal range - date_to: latest date of temporal range - exclude_boundary: whether to exclude the date_from/to in the matched range - """ - DEFAULT = dt.datetime(1979, 1, 1) - if date_from is not None and not isinstance(date_from, dt.datetime): - try: - date_from = parser.parse(date_from, default=DEFAULT).isoformat() + "Z" - except Exception: - print("The provided start date was not recognized") - date_from = "" - - if date_to is not None and not isinstance(date_to, dt.datetime): - try: - date_to = parser.parse(date_to, default=DEFAULT).isoformat() + "Z" - except Exception: - print("The provided end date was not recognized") - date_to = "" + """Filter by an open or closed date range. Dates can be provided as date objects + or ISO 8601 strings. Multiple ranges can be provided by successive method calls. + ???+ Tip + Giving `datetime.date(Y, M, D)` or `%Y-%m-%d` as the `date_to` parameter is inclusive + of the whole day (the time component is set to `23:59:59`). + Using `datetime.datetime(Y, M, D)` is different, because the time component defaults + to `00:00:00`. + + Parameters: + date_from (String or Date): start of temporal range + date_to (String or Date): end of temporal range + exclude_boundary (Boolean): whether to exclude the date_from and date_to in the matched range. + """ super().temporal(date_from, date_to, exclude_boundary) return self diff --git a/poetry.lock b/poetry.lock index 5ca33866..f9a6adb4 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,109 +1,109 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. 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["certifi", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "ipaddress", "pyOpenSSL (>=0.14)", "urllib3-secure-extra"] socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"] +[[package]] +name = "urllib3" +version = "2.2.1" +description = "HTTP library with thread-safe connection pooling, file post, and more." +optional = false +python-versions = ">=3.8" +files = [ + {file = "urllib3-2.2.1-py3-none-any.whl", hash = "sha256:450b20ec296a467077128bff42b73080516e71b56ff59a60a02bef2232c4fa9d"}, + {file = "urllib3-2.2.1.tar.gz", hash = "sha256:d0570876c61ab9e520d776c38acbbb5b05a776d3f9ff98a5c8fd5162a444cf19"}, +] + +[package.extras] +brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"] +h2 = ["h2 (>=4,<5)"] +socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"] +zstd = ["zstandard (>=0.18.0)"] + [[package]] name = "vcrpy" version = "6.0.1" @@ -5109,4 +5225,4 @@ kerchunk = ["dask", "kerchunk"] [metadata] lock-version = "2.0" python-versions = ">=3.8,<4.0" -content-hash = "5344a948e7ae73de6bcfd7fa30089469daf6b232e3f0498cc1a47ba860ebb497" +content-hash = "6c2a212b757a3891e63e853f50b3d0f64e6caed25f711bb41a6f8058cd4e9771" diff --git a/pyproject.toml b/pyproject.toml index 6484f32e..44219c30 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -34,7 +34,7 @@ classifiers = [ # here, make sure to also update `ci/environment-mindeps.yaml`. [tool.poetry.dependencies] python = ">=3.8,<4.0" -python-cmr = ">=0.9.0" +python-cmr = ">=0.10.0" pqdm = ">=0.1" requests = ">=2.26" s3fs = ">=2022.11" diff --git a/tests/unit/test_collection_queries.py b/tests/unit/test_collection_queries.py index f2c42a38..90ba4fd1 100644 --- a/tests/unit/test_collection_queries.py +++ b/tests/unit/test_collection_queries.py @@ -5,14 +5,19 @@ from earthaccess.search import DataCollections valid_single_dates = [ - ("2001-12-12", "2001-12-21", "2001-12-12T00:00:00Z,2001-12-21T00:00:00Z"), + ("2001-12-12", "2001-12-21", "2001-12-12T00:00:00Z,2001-12-21T23:59:59Z"), ("2021-02-01", "", "2021-02-01T00:00:00Z,"), - ("1999-02-01 06:00", "2009-01-01", "1999-02-01T06:00:00Z,2009-01-01T00:00:00Z"), + ("1999-02-01 06:00", "2009-01-01", "1999-02-01T06:00:00Z,2009-01-01T23:59:59Z"), ( dt.datetime(2021, 2, 1), dt.datetime(2021, 2, 2), "2021-02-01T00:00:00Z,2021-02-02T00:00:00Z", ), + ( + "2019-03-10T00:00:00Z", + "2019-03-11T23:59:59Z", + "2019-03-10T00:00:00Z,2019-03-11T23:59:59Z", + ), ] invalid_single_dates = [ diff --git a/tests/unit/test_granule_queries.py b/tests/unit/test_granule_queries.py index 33280810..4c42a48e 100644 --- a/tests/unit/test_granule_queries.py +++ b/tests/unit/test_granule_queries.py @@ -5,14 +5,19 @@ from earthaccess.search import DataGranules valid_single_dates = [ - ("2001-12-12", "2001-12-21", "2001-12-12T00:00:00Z,2001-12-21T00:00:00Z"), + ("2001-12-12", "2001-12-21", "2001-12-12T00:00:00Z,2001-12-21T23:59:59Z"), ("2021-02-01", "", "2021-02-01T00:00:00Z,"), - ("1999-02-01 06:00", "2009-01-01", "1999-02-01T06:00:00Z,2009-01-01T00:00:00Z"), + ("1999-02-01 06:00", "2009-01-01", "1999-02-01T06:00:00Z,2009-01-01T23:59:59Z"), ( dt.datetime(2021, 2, 1), dt.datetime(2021, 2, 2), "2021-02-01T00:00:00Z,2021-02-02T00:00:00Z", ), + ( + "2019-03-10T00:00:00Z", + "2019-03-11T23:59:59Z", + "2019-03-10T00:00:00Z,2019-03-11T23:59:59Z", + ), ] invalid_single_dates = [ From 50b46d397e46d181f4112d309d87861c16dc7aa8 Mon Sep 17 00:00:00 2001 From: Ian Carroll Date: Fri, 12 Apr 2024 20:38:10 +0000 Subject: [PATCH 02/10] add lxml-html-clean --- poetry.lock | 22 ++++++++++++++++++---- pyproject.toml | 1 + 2 files changed, 19 insertions(+), 4 deletions(-) diff --git a/poetry.lock b/poetry.lock index f9a6adb4..53573215 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2315,6 +2315,20 @@ html5 = ["html5lib"] htmlsoup = ["BeautifulSoup4"] source = ["Cython (>=3.0.10)"] +[[package]] +name = "lxml-html-clean" +version = "0.1.1" +description = "HTML cleaner from lxml project" +optional = false +python-versions = "*" +files = [ + {file = "lxml_html_clean-0.1.1-py3-none-any.whl", hash = "sha256:58c04176593c9caf72ec92e033d2f38859e918b3eff0cc0f8051ad27dc2ab8ef"}, + {file = "lxml_html_clean-0.1.1.tar.gz", hash = "sha256:8a644ed01dbbe132fabddb9467f077f6dad12a1d4f3a6a553e280f3815fa46df"}, +] + +[package.dependencies] +lxml = "*" + [[package]] name = "markdown" version = "3.6" @@ -4395,13 +4409,13 @@ win32 = ["pywin32"] [[package]] name = "setuptools" -version = "69.3.0" +version = "69.4.0" description = "Easily download, build, install, upgrade, and uninstall Python packages" optional = false python-versions = ">=3.8" files = [ - {file = "setuptools-69.3.0-py3-none-any.whl", hash = "sha256:48c518e350470d98cfa2944a31edbfc897c9a7d8fa4847da66d89f0f5fb64b57"}, - {file = "setuptools-69.3.tar.gz", hash = "sha256:e1fd0ca7ba442e4be8a415dcca867b8018777dd5f95f4492bb4dc7d77dbc8bd8"}, + {file = "setuptools-69.4.0-py3-none-any.whl", hash = "sha256:b6df12d754b505e4ca283c61582d5578db83ae2f56a979b3bc9a8754705ae3bf"}, + {file = "setuptools-69.4.tar.gz", hash = "sha256:659e902e587e77fab8212358f5b03977b5f0d18d4724310d4a093929fee4ca1a"}, ] [package.extras] @@ -5225,4 +5239,4 @@ kerchunk = ["dask", "kerchunk"] [metadata] lock-version = "2.0" python-versions = ">=3.8,<4.0" -content-hash = "6c2a212b757a3891e63e853f50b3d0f64e6caed25f711bb41a6f8058cd4e9771" +content-hash = "93e2afdd812b3a4ffe1bad6bb3159373fc4b33d0dc6c88e17e5bca336a21fe96" diff --git a/pyproject.toml b/pyproject.toml index 44219c30..2c422919 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -57,6 +57,7 @@ pre-commit = ">=2.4" pytest = ">=6.0" pytest-cov = ">=2.8" pytest-watch = ">=4.2" +lxml-html-clean = "^0.1.1" mkdocs = ">=1.2" mkdocs-material = ">=7.1,<9.0" markdown-callouts = ">=0.2.0" From 463c2f351ba7b03d905f101f4a298db5b1137e7f Mon Sep 17 00:00:00 2001 From: Ian Carroll Date: Mon, 15 Apr 2024 10:57:23 -0400 Subject: [PATCH 03/10] better documentaion --- docs/tutorials/SSL.ipynb | 20 +++++++++----------- earthaccess/api.py | 4 ++-- earthaccess/search.py | 16 ++++++++-------- 3 files changed, 19 insertions(+), 21 deletions(-) diff --git a/docs/tutorials/SSL.ipynb b/docs/tutorials/SSL.ipynb index def268fd..75182d4b 100644 --- a/docs/tutorials/SSL.ipynb +++ b/docs/tutorials/SSL.ipynb @@ -102,10 +102,8 @@ "source": [ "granules = earthaccess.search_data(\n", " short_name = \"SEA_SURFACE_HEIGHT_ALT_GRIDS_L4_2SATS_5DAY_6THDEG_V_JPL2205\",\n", - " temporal = (\"2017-01\",\"2018-01\"),\n", - " count = -1\n", - ")\n", - "print(len(granules))" + " count = 1\n", + ")" ] }, { @@ -185,10 +183,10 @@ " print(f\"Retrieving data for year: {year}\")\n", " results = earthaccess.search_data(\n", " doi = \"10.5067/SLREF-CDRV3\",\n", - " temporal=(f\"{year}-05\", f\"{year}-06\")\n", + " temporal=(f\"{year}-05\", f\"{year}-05\"),\n", + " count = 1,\n", " )\n", - " if len(results)>0:\n", - " granules.append(results[0])\n", + " granules.append(results[0])\n", "print(f\"Total granules: {len(granules)}\")" ] }, @@ -259,11 +257,11 @@ "def ssl_area(lats):\n", " \"\"\"\n", " Calculate the area associated with a 1/6 by 1/6 degree box at latitude specified in 'lats'.\n", - " \n", + "\n", " Parameter\n", " ==========\n", - " lats: a list or numpy array of size N the latitudes of interest. \n", - " \n", + " lats: a list or numpy array of size N the latitudes of interest.\n", + "\n", " Return\n", " =======\n", " out: Array (N) area values (unit: m^2)\n", @@ -357,7 +355,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.9.16" + "version": "3.11.8" } }, "nbformat": 4, diff --git a/earthaccess/api.py b/earthaccess/api.py index a7d35fb0..c3faf415 100644 --- a/earthaccess/api.py +++ b/earthaccess/api.py @@ -46,7 +46,7 @@ def search_datasets( * **daac**: e.g. NSIDC or PODAAC * **provider**: particular to each DAAC, e.g. POCLOUD, LPDAAC etc. * **temporal**: a tuple representing temporal bounds in the form - `("yyyy-mm-dd", "yyyy-mm-dd")` + `(date_from, date_to)` * **bounding_box**: a tuple representing spatial bounds in the form `(lower_left_lon, lower_left_lat, upper_right_lon, upper_right_lat)` @@ -96,7 +96,7 @@ def search_data( * **daac**: e.g. NSIDC or PODAAC * **provider**: particular to each DAAC, e.g. POCLOUD, LPDAAC etc. * **temporal**: a tuple representing temporal bounds in the form - `("yyyy-mm-dd", "yyyy-mm-dd")` + `(date_from, date_to)` * **bounding_box**: a tuple representing spatial bounds in the form `(lower_left_lon, lower_left_lat, upper_right_lon, upper_right_lat)` diff --git a/earthaccess/search.py b/earthaccess/search.py index 47931887..9647c022 100644 --- a/earthaccess/search.py +++ b/earthaccess/search.py @@ -317,10 +317,10 @@ def temporal( or ISO 8601 strings. Multiple ranges can be provided by successive method calls. ???+ Tip - Giving `datetime.date(Y, M, D)` or `%Y-%m-%d` as the `date_to` parameter is inclusive - of the whole day (the time component is set to `23:59:59`). - Using `datetime.datetime(Y, M, D)` is different, because the time component defaults - to `00:00:00`. + Giving either `datetime.date(YYYY, MM, DD)` or `"YYYY-MM-DD"` as the `date_to` + parameter includes that entire day (i.e. the time is set to `23:59:59`). + Using `datetime.datetime(YYYY, MM, DD)` is different, because `datetime.datetime` + objects have `00:00:00` as their built-in default. Parameters: date_from (String or Date): start of temporal range @@ -613,10 +613,10 @@ def temporal( or ISO 8601 strings. Multiple ranges can be provided by successive method calls. ???+ Tip - Giving `datetime.date(Y, M, D)` or `%Y-%m-%d` as the `date_to` parameter is inclusive - of the whole day (the time component is set to `23:59:59`). - Using `datetime.datetime(Y, M, D)` is different, because the time component defaults - to `00:00:00`. + Giving either `datetime.date(YYYY, MM, DD)` or `"YYYY-MM-DD"` as the `date_to` + parameter includes that entire day (i.e. the time is set to `23:59:59`). + Using `datetime.datetime(YYYY, MM, DD)` is different, because `datetime.datetime` + objects have `00:00:00` as their built-in default. Parameters: date_from (String or Date): start of temporal range From 998bcf031fc22d9e46761597a4cf0146b0581dc1 Mon Sep 17 00:00:00 2001 From: Ian Carroll Date: Mon, 15 Apr 2024 10:57:32 -0400 Subject: [PATCH 04/10] bump python-cmr --- ci/environment-mindeps.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ci/environment-mindeps.yaml b/ci/environment-mindeps.yaml index 75037c51..1428b5bb 100644 --- a/ci/environment-mindeps.yaml +++ b/ci/environment-mindeps.yaml @@ -8,7 +8,7 @@ channels: dependencies: # required dependencies - python=3.8 - - python-cmr=0.9.0 + - python-cmr=0.10.0 - pqdm=0.1 - requests=2.26 - s3fs=2022.11 From 4dccdf71d14f4e65e5ff45e8028b88025b83f00d Mon Sep 17 00:00:00 2001 From: Ian Carroll Date: Mon, 15 Apr 2024 11:35:37 -0400 Subject: [PATCH 05/10] deps change with python-cmr update --- ci/environment-mindeps.yaml | 5 +++-- poetry.lock | 19 ++----------------- pyproject.toml | 1 - 3 files changed, 5 insertions(+), 20 deletions(-) diff --git a/ci/environment-mindeps.yaml b/ci/environment-mindeps.yaml index 1428b5bb..fc942bea 100644 --- a/ci/environment-mindeps.yaml +++ b/ci/environment-mindeps.yaml @@ -8,14 +8,12 @@ channels: dependencies: # required dependencies - 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vcrpy - pip - pip: - - python-cmr=0.10.0 + - python-cmr==0.10.0 From 5dc411a1b1d713c029b48ead8afc55cf1ad95ccb Mon Sep 17 00:00:00 2001 From: Ian Carroll Date: Mon, 15 Apr 2024 16:16:37 -0400 Subject: [PATCH 07/10] lint --- ci/environment-mindeps.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ci/environment-mindeps.yaml b/ci/environment-mindeps.yaml index 271c6513..96245d0b 100644 --- a/ci/environment-mindeps.yaml +++ b/ci/environment-mindeps.yaml @@ -26,4 +26,4 @@ dependencies: - vcrpy - pip - pip: - - python-cmr==0.10.0 + - python-cmr==0.10.0 From 2d7a8d289158683da439da7567777f371490ca8d Mon Sep 17 00:00:00 2001 From: Ian Carroll Date: Tue, 16 Apr 2024 09:01:10 -0400 Subject: [PATCH 08/10] remove conda-forge workaround --- ci/environment-mindeps.yaml | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/ci/environment-mindeps.yaml b/ci/environment-mindeps.yaml index 96245d0b..05157fca 100644 --- a/ci/environment-mindeps.yaml +++ b/ci/environment-mindeps.yaml @@ -8,6 +8,7 @@ channels: dependencies: # required dependencies - 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