Add Nextflow (nf-canary) tests to Funnel #295
Workflow file for this run
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| name: Go | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - master | |
| jobs: | |
| lint: | |
| name: lint | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/setup-go@v3 | |
| with: | |
| go-version: 1.21 | |
| - uses: actions/checkout@v3 | |
| - name: golangci-lint | |
| uses: golangci/golangci-lint-action@v3 | |
| with: | |
| version: latest | |
| args: --timeout 3m --verbose -D unused -D errcheck -D staticcheck -D govet -D gosimple -D ineffassign | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Set up Go 1.x | |
| uses: actions/setup-go@v2 | |
| with: | |
| go-version: ^1.18 | |
| - name: Check out code | |
| uses: actions/checkout@v2 | |
| - name: Build | |
| run: make build | |
| - name: Store funnel | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: funnelBin | |
| path: funnel | |
| unitTest: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Set up Go 1.x | |
| uses: actions/setup-go@v2 | |
| with: | |
| go-version: ^1.18 | |
| - name: Check out code | |
| uses: actions/checkout@v2 | |
| - name: Unit Tests | |
| run: make test-verbose | |
| mongoTest: | |
| runs-on: ubuntu-latest | |
| needs: build | |
| steps: | |
| - name: Check out code | |
| uses: actions/checkout@v2 | |
| - name: Download funnel bin | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: funnelBin | |
| - name: MongoTest | |
| run: | | |
| chmod +x funnel | |
| make start-mongodb | |
| sleep 10 | |
| make test-mongodb | |
| badgerTest: | |
| runs-on: ubuntu-latest | |
| needs: build | |
| steps: | |
| - name: Check out code | |
| uses: actions/checkout@v2 | |
| - name: Download funnel bin | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: funnelBin | |
| - name: Badger Test | |
| run: | | |
| chmod +x funnel | |
| make test-badger | |
| slurmTest: | |
| runs-on: ubuntu-latest | |
| needs: build | |
| steps: | |
| - name: Check out code | |
| uses: actions/checkout@v2 | |
| - name: Download funnel bin | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: funnelBin | |
| - name: Slurm Test | |
| run: | | |
| chmod +x funnel | |
| make test-slurm | |
| s3Test: | |
| runs-on: ubuntu-latest | |
| needs: build | |
| steps: | |
| - name: Check out code | |
| uses: actions/checkout@v2 | |
| - name: Download funnel bin | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: funnelBin | |
| - name: S3 Test | |
| run: | | |
| chmod +x funnel | |
| make start-generic-s3 | |
| sleep 10 | |
| make test-generic-s3 | |
| nextflow: | |
| runs-on: ubuntu-latest | |
| needs: build | |
| steps: | |
| - name: Check out code | |
| uses: actions/checkout@v2 | |
| - name: Download funnel | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: funnelBin | |
| - name: Run Nextflow test (nf-canary) | |
| run: | | |
| chmod +x funnel | |
| ./funnel server run & | |
| git clone https://github.com/ohsu-comp-bio/nf-canary | |
| cd nf-canary | |
| nextflow run main.nf |