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Update Compliance Tests support #305

Update Compliance Tests support

Update Compliance Tests support #305

Workflow file for this run

name: Go
on:
push:
jobs:
lint:
name: lint
runs-on: ubuntu-latest
steps:
- uses: actions/setup-go@v3
with:
go-version: 1.21
- uses: actions/checkout@v3
- name: golangci-lint
uses: golangci/golangci-lint-action@v3
with:
version: latest
args: --timeout 3m --verbose -D unused -D errcheck -D staticcheck -D govet -D gosimple -D ineffassign
build:
runs-on: ubuntu-latest
steps:
- name: Set up Go 1.x
uses: actions/setup-go@v2
with:
go-version: ^1.18
- name: Check out code
uses: actions/checkout@v2
- name: Build
run: make build
- name: Store funnel
uses: actions/upload-artifact@v2
with:
name: funnelBin
path: funnel
unitTest:
runs-on: ubuntu-latest
steps:
- name: Set up Go 1.x
uses: actions/setup-go@v2
with:
go-version: ^1.18
- name: Check out code
uses: actions/checkout@v2
- name: Unit Tests
run: make test-verbose
mongoTest:
runs-on: ubuntu-latest
needs: build
steps:
- name: Check out code
uses: actions/checkout@v2
- name: Download funnel bin
uses: actions/download-artifact@v2
with:
name: funnelBin
- name: MongoTest
run: |
chmod +x funnel
make start-mongodb
sleep 10
make test-mongodb
badgerTest:
runs-on: ubuntu-latest
needs: build
steps:
- name: Check out code
uses: actions/checkout@v2
- name: Download funnel bin
uses: actions/download-artifact@v2
with:
name: funnelBin
- name: Badger Test
run: |
chmod +x funnel
make test-badger
slurmTest:
runs-on: ubuntu-latest
needs: build
steps:
- name: Check out code
uses: actions/checkout@v2
- name: Download funnel bin
uses: actions/download-artifact@v2
with:
name: funnelBin
- name: Slurm Test
run: |
chmod +x funnel
make test-slurm
s3Test:
runs-on: ubuntu-latest
needs: build
steps:
- name: Check out code
uses: actions/checkout@v2
- name: Download funnel bin
uses: actions/download-artifact@v2
with:
name: funnelBin
- name: S3 Test
run: |
chmod +x funnel
make start-generic-s3
sleep 10
make test-generic-s3
nextflow:
runs-on: ubuntu-latest
needs: build
steps:
- name: Check out code
uses: actions/checkout@v2
- name: Download funnel
uses: actions/download-artifact@v2
with:
name: funnelBin
- name: Run Nextflow test (nf-canary)
run: |
chmod +x funnel
./funnel server run &
git clone https://github.com/ohsu-comp-bio/nf-canary
cd nf-canary
nextflow run main.nf