Move Nextflow test to existing tests workflow

.github/workflows/compliance-test.yaml

@@ -28,21 +28,38 @@
 name: Compliance Test
 
 on:
-  workflow_run:
-    workflows: ["Build"]
-    types:
-      - completed
-    branches: 
-      - '**'
+  push:
 
 jobs:
+  build:
+    runs-on: ubuntu-latest
+    container: quay.io/ohsu-comp-bio/slurm
+    steps:
+    - name: Set up Go 1.x
+      uses: actions/setup-go@v2
+      with:
+        go-version: ^1.18
+
+    - name: Check out code
+      uses: actions/checkout@v2
+
+    - name: Build
+      run: make build
+
+    - name: Store funnel
+      uses: actions/upload-artifact@v2
+      with:
+        name: funnelBin
+        path: funnel
+
   compliance:
     strategy:
       fail-fast: false
       matrix:
         version: [1.0.0, 1.1.0]
         db: ["boltdb", "mongodb"]
         compute: ["local", "slurm"]
+    needs: build
     runs-on: ubuntu-latest
     container:
       image: quay.io/ohsu-comp-bio/slurm

.github/workflows/tests.yaml

@@ -1,14 +1,11 @@
 name: Go
 
 on:
-  workflow_run:
-    workflows: ["Build"]
-    types:
-      - completed
-    branches: 
-      - '**'
+  - pull_request
+  - push
 
 jobs:
+
   lint:
     name: lint
     runs-on: ubuntu-latest
@@ -23,6 +20,26 @@ jobs:
           version: latest
           args: --timeout 3m --verbose -D unused -D errcheck -D staticcheck -D govet -D gosimple -D ineffassign
 
+  build:
+    runs-on: ubuntu-latest
+    steps:
+    - name: Set up Go 1.x
+      uses: actions/setup-go@v2
+      with:
+        go-version: ^1.18
+
+    - name: Check out code
+      uses: actions/checkout@v2
+
+    - name: Build
+      run: make build
+
+    - name: Store funnel
+      uses: actions/upload-artifact@v2
+      with:
+        name: funnelBin
+        path: funnel
+
   unitTest:
     runs-on: ubuntu-latest
     steps:
@@ -38,6 +55,7 @@ jobs:
 
   mongoTest:
     runs-on: ubuntu-latest
+    needs: build
     steps:
     - name: Check out code
       uses: actions/checkout@v2
@@ -56,6 +74,7 @@ jobs:
 
   badgerTest:
     runs-on: ubuntu-latest
+    needs: build
     steps:
     - name: Check out code
       uses: actions/checkout@v2
@@ -71,6 +90,7 @@ jobs:
 
   slurmTest:
     runs-on: ubuntu-latest
+    needs: build
     steps:
     - name: Check out code
       uses: actions/checkout@v2
@@ -87,6 +107,7 @@ jobs:
 
   s3Test:
     runs-on: ubuntu-latest
+    needs: build
     steps:
     - name: Check out code
       uses: actions/checkout@v2
@@ -105,6 +126,7 @@ jobs:
 
   nextflow:
     runs-on: ubuntu-latest
+    needs: build
     steps:
     - name: Check out code
       uses: actions/checkout@v2
@@ -116,4 +138,7 @@ jobs:
         path: funnel
 
     - name: Run Nextflow test (nf-canary)
-      run: funnel task create examples/nextflow.json
+      run: |
+        chmod +x funnel
+        funnel server run --config funnel.config
+        funnel task create examples/nextflow.json