update LR #584
Workflow file for this run
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| # The purpose of this action is to run `document()` of the roxygen2 package on each commit. | |
| # If new documentation was generated, it will automatically add a commit to the current branch. | |
| # This has the same effect as running `document()` locally, but | |
| # * ensures it cannot be forgotten | |
| # * saves setting up the development environment locally, which is especially useful for new contributors. | |
| # | |
| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| pull_request: | |
| paths: ["R/**", ".github/workflows"] | |
| name: Document | |
| jobs: | |
| document: | |
| runs-on: ubuntu-latest # self-hosted | |
| env: | |
| GITHUB_PAT: ${{ secrets.TOKEN }} | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| # extra token required to trigger github actions again on commit | |
| token: ${{ secrets.TOKEN }} # BOT_GH_TOKEN | |
| - name: Update system dependencies | |
| run: | | |
| sudo apt-get update && sudo apt-get install \ | |
| libcurl4-openssl-dev -y | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Install pak | |
| run: Rscript -e "install.packages('pak', repos='https://cran.rstudio.com/')" | |
| #- name: Install SpatialExperiment | |
| # run: Rscript -e "pak::pkg_install('drighelli/SpatialExperiment')" | |
| - name: Install Devtools | |
| run: Rscript -e "pak::pkg_install('devtools')" | |
| - name: Install SpatialExperiment | |
| run: Rscript -e "devtools::install_github('drighelli/SpatialExperiment')" | |
| - name: Install dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| dependencies: '"hard"' # do not install suggests | |
| extra-packages: any::roxygen2 | |
| needs: roxygen2 | |
| - name: Document | |
| run: roxygen2::roxygenise() | |
| shell: Rscript {0} | |
| - uses: stefanzweifel/git-auto-commit-action@v4 | |
| with: | |
| commit_message: Roxygenize |