Code

update LR#147

Code

Merged

czackl merged 17 commits intomainomnideconv/spacedeconv:mainfrom updateLRomnideconv/spacedeconv:updateLRCopy head branch name to clipboardOct 5, 2024

+296-71

Commits

Commits on May 23, 2024

• added ENSEMBL check for LR analysis

  czackl

  committed
  db13396

  Copy full SHA for db13396

• updated ENSEMBL check

  czackl

  committed
  ad90b56

  Copy full SHA for ad90b56

Commits on Aug 6, 2024

• working of duplicate gene removal

  czackl

  committed
  9a9dbe9

  Copy full SHA for 9a9dbe9

• updated description

  czackl

  committed
  fc79892

  Copy full SHA for fc79892

• updated DESCRIPTION

  czackl

  committed
  596e3cb

  Copy full SHA for 596e3cb

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for ec38c26
  pre-commit-ci[bot]

  committed
  ec38c26

  Copy full SHA for ec38c26

Commits on Aug 8, 2024

• deprecated plot_celltype

  czackl

  committed
  e5e8fb9

  Copy full SHA for e5e8fb9

• updated workflow to install system deps

  czackl

  committed
  9cb175c

  Copy full SHA for 9cb175c

• updated scatter plot to run with only one object

  czackl

  committed
  7d34ca4

  Copy full SHA for 7d34ca4

Commits on Aug 13, 2024

• added logpf normalization

  czackl

  committed
  aadd579

  Copy full SHA for aadd579

• improved duplicate gene removal

  czackl

  committed
  3add67f

  Copy full SHA for 3add67f

Commits on Aug 30, 2024

• added pseudocount parameter

  czackl

  committed
  b05c203

  Copy full SHA for b05c203

Commits on Sep 7, 2024

• added parameter to control shifting values to positive scale

  czackl

  committed
  9a5039c

  Copy full SHA for 9a5039c

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 41f5e38
  pre-commit-ci[bot]

  committed
  41f5e38

  Copy full SHA for 41f5e38

Commits on Sep 29, 2024

• updated dependencies

  czackl

  committed
  6764319

  Copy full SHA for 6764319

• updated actions

  czackl

  committed
  249a8fe

  Copy full SHA for 249a8fe

Commits on Sep 30, 2024

• updated depencencies

  czackl

  committed
  943ec96

  Copy full SHA for 943ec96