Add more stats helpers

.readthedocs.yml

@@ -11,6 +11,8 @@ build:
 python:
   install:
     - requirements: docs/requirements.txt
+    - method: pip
+      path: .
 
 sphinx:
   configuration: docs/source/conf.py

docs/source/api.rst

@@ -0,0 +1,33 @@
+.. py:module:: problem_bank_helpers
+
+=============
+API Reference
+=============
+
+problem_bank_helpers
+--------------------
+
+All the functions and classes available in the `problem_bank_helpers` module
+are available by importing the module itself. For example::
+
+    import problem_bank_helpers as pbh
+
+You do not need to import this sub-module directly, it re-exported at the module level.
+
+.. automodule:: problem_bank_helpers.problem_bank_helpers
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+stats
+-----
+
+All of the functions available in the `stats` sub-module are available by importing the module itself. For example::
+
+    import problem_bank_helpers as pbh
+    pbh.stats
+
+.. automodule:: problem_bank_helpers.stats
+    :members:
+    :undoc-members:
+    :show-inheritance:

docs/source/conf.py

@@ -16,21 +16,62 @@
 # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
 # ones.
 extensions = [
-    "autoapi.extension",
+    "nbsphinx",
     "sphinx.ext.napoleon",
+    "sphinx.ext.autodoc",
     "sphinx.ext.viewcode",
-    "nbsphinx",
+    "sphinx.ext.intersphinx",
+    "matplotlib.sphinxext.plot_directive",
 ]
-autoapi_type = "python"
-autoapi_dirs = ["../../src"]
-napoleon_numpy_docstring = True
+
 nbsphinx_execute = "always"
+autodoc_member_order = "bysource"
+autodoc_typehints = "none"
+
+# Napoleon settings
+napoleon_use_admonition_for_examples = True
+napoleon_use_admonition_for_notes = True
+napoleon_use_admonition_for_references = True
+
+plot_pre_code = """
+import numpy as np
+import matplotlib.pyplot as plt
+import problem_bank_helpers as pbh
+"""
+plot_formats = ["png"]
+plot_include_source = True
+plot_html_show_source_link = False
+plot_html_show_formats = False
 
 # List of patterns, relative to source directory, that match files and
 # directories to ignore when looking for source files.
 # This pattern also affects html_static_path and html_extra_path.
 exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]
 
+# Links used for cross-referencing stuff in other documentation
+intersphinx_mapping = {
+    "py": ("https://docs.python.org/3", None),
+    "mpl": ("https://matplotlib.org/stable", None),
+}
+
+show_warning_types = True
+
+nitpick_ignore = [
+    ("py:class", "optional"),
+    ("py:class", "number"),
+    # ("py:class", "float/str"),
+    # ("py:class", "color"),
+    # ("py:class", "x; μ"),
+    # ("py:class", "\u03C3"),
+    # ("py:class", "'"),
+]
+
+# nitpick_ignore_regex = [
+#     ("py:class", r".*2 floats"),
+#     ("py:class", r"\d"),
+#     ("py:class", r"default:.*"),
+# ]
+
 # -- Options for HTML output -------------------------------------------------
 
 # The theme to use for HTML and HTML Help pages.  See the documentation for

docs/source/index.rst

@@ -12,4 +12,5 @@ To get started, check out the sections below:
    installation
    usage
    contributing
-   conduct
+   conduct
+   api

pyproject.toml

@@ -15,11 +15,11 @@ python = ">=3.10"
 sigfig = "^1.3.3"
 numpy = "^1.26.4"
 pandas = "^2.2.2"
-matplotlib = "^3.9.1"
+matplotlib = "^3.9.2"
 scipy = "^1.14.0"
 
 [tool.poetry.group.dev.dependencies]
-pytest = "^8.2.2"
+pytest = "^8.3.2"
 
 [build-system]
 requires = ["poetry-core>=1.0.0"]