diff --git a/pairtools/lib/dedup.py b/pairtools/lib/dedup.py index 92e99de..335270b 100644 --- a/pairtools/lib/dedup.py +++ b/pairtools/lib/dedup.py @@ -5,7 +5,7 @@ from scipy.sparse import coo_matrix from scipy.sparse.csgraph import connected_components -from . import dedup_cython, pairsam_format +from . import pairsam_format from .stats import PairCounter from .._logging import get_logger @@ -339,6 +339,8 @@ def streaming_dedup_cython( ------- """ + from . import dedup_cython + maxind = max(c1ind, c2ind, p1ind, p2ind, s1ind, s2ind) if bool(extra_cols1) and bool(extra_cols2): maxind = max(maxind, max(extra_cols1), max(extra_cols2))