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chore: change picsed finngen outputh path #385

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merged 1 commit into from
Jan 5, 2024

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ireneisdoomed
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to align it with gwas_catalog_preprocess.py

to align it with `gwas_catalog_preprocess.py`
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@d0choa d0choa left a comment

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Thanks

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Codecov Report

Attention: 29 lines in your changes are missing coverage. Please review.

Comparison is base (42b366c) 85.67% compared to head (5b51a87) 86.84%.
Report is 36 commits behind head on dev.

Additional details and impacted files

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@@            Coverage Diff             @@
##              dev     #385      +/-   ##
==========================================
+ Coverage   85.67%   86.84%   +1.17%     
==========================================
  Files          89       92       +3     
  Lines        2101     2433     +332     
==========================================
+ Hits         1800     2113     +313     
- Misses        301      320      +19     
Files Coverage Δ
src/airflow/dags/common_airflow.py 90.38% <ø> (ø)
src/airflow/dags/finngen_preprocess.py 100.00% <100.00%> (ø)
src/otg/dataset/l2g_feature_matrix.py 82.92% <ø> (+7.31%) ⬆️
src/otg/dataset/study_locus.py 96.20% <100.00%> (+0.04%) ⬆️
src/otg/datasource/eqtl_catalogue/study_index.py 85.00% <ø> (ø)
src/otg/datasource/finngen/study_index.py 100.00% <100.00%> (ø)
src/otg/datasource/finngen/summary_stats.py 100.00% <100.00%> (ø)
src/otg/datasource/gwas_catalog/study_index.py 100.00% <ø> (ø)
src/otg/datasource/ukbiobank/study_index.py 100.00% <ø> (ø)
src/otg/l2g.py 58.06% <ø> (ø)
... and 8 more

@ireneisdoomed ireneisdoomed merged commit ac1064f into dev Jan 5, 2024
3 checks passed
@DSuveges DSuveges deleted the il-finngen-credible-set-path branch January 17, 2024 13:04
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3 participants