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33 Open 102 Closed
33 Open 102 Closed
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Issues list

Add variant and effect classes for gene fusions
#252 opened May 2, 2024 by iskandr
Insertion effect from SNV?
#250 opened Oct 11, 2023 by iskandr
1
pyvcf dependency is causing installation failure on setuptools>=58
#247 opened Oct 11, 2021 by susannasiebert
4
error on nonframeshift deletion
#246 opened Jan 8, 2020 by mpallocc
1
Make liftover between genomes explicit method
#243 opened Oct 7, 2019 by iskandr
Add a difference set operation to VariantCollection
#229 opened Feb 16, 2018 by julia326
EffectCollection is not sorted by priority by default bug
#227 opened Sep 9, 2017 by tavinathanson
Order of VariantCollection with sort_key=None
#220 opened Apr 1, 2017 by iskandr
1
Use HGVS format for Silent.short_description
#217 opened Mar 17, 2017 by joaoe
Fix short_description for PrematureStop with empty aa_ref
#216 opened Mar 15, 2017 by joaoe
1
What if the ref allele is a common SNP?
#215 opened Mar 6, 2017 by johannesreiter
4
Allow specification of ensembl release as part of genome on commandline
#214 opened Mar 3, 2017 by iskandr
Silent.aa_pos wrong for synonymous SNPs
#208 opened Jan 8, 2017 by joaoe
1
Provide mutation info with StartLosses
#206 opened Dec 9, 2016 by joaoe
1
Stoploss confused as insert
#205 opened Dec 7, 2016 by joaoe
Synonymous Insertion before stop codon annotated as non silent insert
#201 opened Oct 26, 2016 by joaoe
2
Annotate all transcripts
#195 opened Oct 4, 2016 by joaoe
4
Installation of varcode requires README.md
#187 opened Sep 27, 2016 by iskandr
1
Variant effects should contain mutated_sequence enhancement
#179 opened Sep 15, 2016 by ihodes
2
Rename start to pos
#143 opened Apr 18, 2016 by iskandr
4
Change meaning of ref and alt fields
#142 opened Apr 18, 2016 by iskandr
consider memoizing smarter
#133 opened Dec 14, 2015 by timodonnell
Support loading structural variants
#123 opened Sep 18, 2015 by iskandr
1
varcode fails when it sees strange sequences in a vcf
#88 opened May 29, 2015 by kippakers
3
support filtering a VariantCollection according to an intervals list file
#59 opened Apr 15, 2015 by timodonnell
2
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