From 35154540300c22ad684d975cf48763d98d0c7eba Mon Sep 17 00:00:00 2001
From: Michael Foster <50351736+mjfos2r@users.noreply.github.com>
Date: Fri, 15 Nov 2024 10:25:16 -0500
Subject: [PATCH] Fix Dockerfile (#345)

* updated environment.yml and Dockerfile
* Update environment.yml
* Fixed version ordering
* Update environment.yml
* fixed ordering
---
 Dockerfile      | 2 +-
 environment.yml | 1 +
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/Dockerfile b/Dockerfile
index 855711e..888974a 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -13,7 +13,7 @@ RUN apk update && apk add wget tar bash \
     && rm glibc-2.32-r0.apk \
     && wget --no-iri -qO- https://micromamba.snakepit.net/api/micromamba/linux-64/latest | tar -xvj bin/micromamba \
     && touch /root/.bashrc \
-    && ./bin/micromamba shell init -s bash -p /opt/conda  \
+    && ./bin/micromamba shell init -s bash -r /opt/conda  \
     && cp /root/.bashrc /opt/conda/bashrc
 
 COPY environment.yml /tmp/
diff --git a/environment.yml b/environment.yml
index edaf824..6a685e2 100644
--- a/environment.yml
+++ b/environment.yml
@@ -4,6 +4,7 @@ channels:
   - bioconda
   - defaults
 dependencies:
+  - python >=3.9,<3.12
   - biopython>=1.78
   - xopen>=1.5.0
   - requests>=2.25.1