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"tinycss2-1.3.0-py3-none-any.whl", hash = "sha256:54a8dbdffb334d536851be0226030e9505965bb2f30f21a4a82c55fb2a80fae7"}, + {file = "tinycss2-1.3.0.tar.gz", hash = "sha256:152f9acabd296a8375fbca5b84c961ff95971fcfc32e79550c8df8e29118c54d"}, ] [package.dependencies] @@ -2848,7 +2846,7 @@ webencodings = ">=0.4" [package.extras] doc = ["sphinx", "sphinx_rtd_theme"] -test = ["flake8", "isort", "pytest"] +test = ["pytest", "ruff"] [[package]] name = "toml" @@ -2894,40 +2892,36 @@ files = [ [[package]] name = "traitlets" -version = "5.14.2" +version = "5.14.3" description = "Traitlets Python configuration system" optional = false python-versions = ">=3.8" files = [ - {file = "traitlets-5.14.2-py3-none-any.whl", hash = "sha256:fcdf85684a772ddeba87db2f398ce00b40ff550d1528c03c14dbf6a02003cd80"}, - {file = "traitlets-5.14.2.tar.gz", hash = "sha256:8cdd83c040dab7d1dee822678e5f5d100b514f7b72b01615b26fc5718916fdf9"}, + {file = "traitlets-5.14.3-py3-none-any.whl", hash = "sha256:b74e89e397b1ed28cc831db7aea759ba6640cb3de13090ca145426688ff1ac4f"}, + {file = "traitlets-5.14.3.tar.gz", hash = "sha256:9ed0579d3502c94b4b3732ac120375cda96f923114522847de4b3bb98b96b6b7"}, ] [package.extras] docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"] -test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<8.1)", "pytest-mock", "pytest-mypy-testing"] +test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<8.2)", "pytest-mock", "pytest-mypy-testing"] [[package]] name = "typer" -version = "0.9.0" +version = "0.12.3" description = "Typer, build great CLIs. Easy to code. Based on Python type hints." optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" files = [ - {file = "typer-0.9.0-py3-none-any.whl", hash = "sha256:5d96d986a21493606a358cae4461bd8cdf83cbf33a5aa950ae629ca3b51467ee"}, - {file = "typer-0.9.0.tar.gz", hash = "sha256:50922fd79aea2f4751a8e0408ff10d2662bd0c8bbfa84755a699f3bada2978b2"}, + {file = "typer-0.12.3-py3-none-any.whl", hash = "sha256:070d7ca53f785acbccba8e7d28b08dcd88f79f1fbda035ade0aecec71ca5c914"}, + {file = "typer-0.12.3.tar.gz", hash = "sha256:49e73131481d804288ef62598d97a1ceef3058905aa536a1134f90891ba35482"}, ] [package.dependencies] -click = ">=7.1.1,<9.0.0" +click = ">=8.0.0" +rich = ">=10.11.0" +shellingham = ">=1.3.0" typing-extensions = ">=3.7.4.3" -[package.extras] -all = ["colorama (>=0.4.3,<0.5.0)", "rich (>=10.11.0,<14.0.0)", "shellingham (>=1.3.0,<2.0.0)"] -dev = ["autoflake (>=1.3.1,<2.0.0)", "flake8 (>=3.8.3,<4.0.0)", "pre-commit (>=2.17.0,<3.0.0)"] -doc = ["cairosvg (>=2.5.2,<3.0.0)", "mdx-include (>=1.4.1,<2.0.0)", "mkdocs (>=1.1.2,<2.0.0)", "mkdocs-material (>=8.1.4,<9.0.0)", "pillow (>=9.3.0,<10.0.0)"] -test = ["black (>=22.3.0,<23.0.0)", "coverage (>=6.2,<7.0)", "isort (>=5.0.6,<6.0.0)", "mypy (==0.910)", "pytest (>=4.4.0,<8.0.0)", "pytest-cov (>=2.10.0,<5.0.0)", "pytest-sugar (>=0.9.4,<0.10.0)", "pytest-xdist (>=1.32.0,<4.0.0)", "rich (>=10.11.0,<14.0.0)", "shellingham (>=1.3.0,<2.0.0)"] - [[package]] name = "types-python-dateutil" version = "2.9.0.20240316" @@ -2941,13 +2935,13 @@ files = [ [[package]] name = "typing-extensions" -version = "4.10.0" +version = "4.11.0" description = "Backported and Experimental Type Hints for Python 3.8+" optional = false python-versions = ">=3.8" files = [ - {file = "typing_extensions-4.10.0-py3-none-any.whl", hash = "sha256:69b1a937c3a517342112fb4c6df7e72fc39a38e7891a5730ed4985b5214b5475"}, - {file = "typing_extensions-4.10.0.tar.gz", hash = "sha256:b0abd7c89e8fb96f98db18d86106ff1d90ab692004eb746cf6eda2682f91b3cb"}, + {file = "typing_extensions-4.11.0-py3-none-any.whl", hash = "sha256:c1f94d72897edaf4ce775bb7558d5b79d8126906a14ea5ed1635921406c0387a"}, + {file = "typing_extensions-4.11.0.tar.gz", hash = "sha256:83f085bd5ca59c80295fc2a82ab5dac679cbe02b9f33f7d83af68e241bea51b0"}, ] [[package]] @@ -2969,13 +2963,13 @@ zstd = ["zstandard (>=0.18.0)"] [[package]] name = "virtualenv" -version = "20.25.1" +version = "20.26.1" description = "Virtual Python Environment builder" optional = false python-versions = ">=3.7" files = [ - {file = "virtualenv-20.25.1-py3-none-any.whl", hash = "sha256:961c026ac520bac5f69acb8ea063e8a4f071bcc9457b9c1f28f6b085c511583a"}, - {file = "virtualenv-20.25.1.tar.gz", hash = "sha256:e08e13ecdca7a0bd53798f356d5831434afa5b07b93f0abdf0797b7a06ffe197"}, + {file = "virtualenv-20.26.1-py3-none-any.whl", hash = "sha256:7aa9982a728ae5892558bff6a2839c00b9ed145523ece2274fad6f414690ae75"}, + {file = "virtualenv-20.26.1.tar.gz", hash = "sha256:604bfdceaeece392802e6ae48e69cec49168b9c5f4a44e483963f9242eb0e78b"}, ] [package.dependencies] @@ -2984,7 +2978,7 @@ filelock = ">=3.12.2,<4" platformdirs = ">=3.9.1,<5" [package.extras] -docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"] +docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2,!=7.3)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"] test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8)", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10)"] [[package]] @@ -3119,4 +3113,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = ">=3.8.1,<4" -content-hash = "7b9d5b058ccbc8ecbb3670e895edcbf8162f593d6c5c5ca3e600317521ab4b30" +content-hash = "55203a528d163329b93cfd4eccbc0084cab4b5ab46847da55c76a49325f04859" diff --git a/pyproject.toml b/pyproject.toml index 9cfd2615..e9a44f7a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -38,7 +38,7 @@ mkdocs-material = ">=8.3.9" mkdocstrings-python = ">=0.7.1" mkdocstrings-python-legacy = ">=0.2.3" pymdown-extensions = ">=9.5" -makim = ">=1.14.0,<1.15" +makim = "1.15.1" [build-system] requires = ["poetry-core>=1.0.0"] diff --git a/src/scicookie/cookiecutter.json b/src/scicookie/cookiecutter.json index dbcdfef7..789f9ab4 100644 --- a/src/scicookie/cookiecutter.json +++ b/src/scicookie/cookiecutter.json @@ -40,9 +40,9 @@ "pybind11" ], "use_bandit": "no", - "use_black": "yes", - "use_conda": "yes", - "use_makim": "yes", + "use_black": "no", + "use_conda": "no", + "use_makim": "no", "use_make": "no", "use_containers": ["None", "Docker", "Podman"], "use_coverage": "no", @@ -51,11 +51,12 @@ "use_isort": "no", "use_mccabe": "no", "use_mypy": "no", - "use_pre_commit": "yes", + "use_pre_commit": "no", "use_prettier": "no", "use_pydocstyle": "no", - "use_pytest": "yes", - "use_ruff": "yes", + "use_pyenv": "no", + "use_pytest": "no", + "use_ruff": "no", "use_shellcheck": "no", "use_vulture": "no", "git_username": "zoro_roronoa", diff --git a/src/scicookie/hooks/post_gen_project.py b/src/scicookie/hooks/post_gen_project.py index ca8b166a..1e3e8743 100644 --- a/src/scicookie/hooks/post_gen_project.py +++ b/src/scicookie/hooks/post_gen_project.py @@ -37,6 +37,9 @@ USE_MAKIM = {{ cookiecutter.use_makim == "yes" }} USE_MYPY = {{ cookiecutter.use_mypy == "yes" }} USE_PRETTIER = {{ cookiecutter.use_prettier == "yes" }} +USE_PRE_COMMIT = {{ cookiecutter.use_pre_commit == "yes" }} +USE_PYTEST = {{ cookiecutter.use_pytest == "yes" }} +USE_HYPOTHESIS = {{ cookiecutter.use_hypothesis == "yes" }} {% if cookiecutter.code_of_conduct == "contributor-covenant" -%} COC_PATH = PROJECT_DIRECTORY / 'coc' / 'CONTRIBUTOR_COVENANT.md' {%- elif cookiecutter.code_of_conduct == "citizen-code-of-conduct" -%} @@ -119,6 +122,11 @@ def move_selected_doc_dir(): shutil.rmtree(DOCS_SPEC_DIR) +def clean_up_tests(): + if not USE_PYTEST and not USE_HYPOTHESIS: + remove_project_file("tests/test_main.py") + + def clean_up_automation(): if not USE_MAKE: remove_project_file("Makefile") @@ -185,11 +193,6 @@ def clean_up_cli(): remove_package_file("cli.py") -def clean_up_prettier(): - if not USE_PRETTIER: - remove_project_file(".prettierrc.yaml") - remove_project_file(".prettierignore") - def clean_up_build_system(): build_system_dir = PROJECT_DIRECTORY / "build-system" @@ -274,6 +277,28 @@ def http2ssh(url): url = url.replace("https://", "git@") return url.replace("/", ":", 1) +def clean_up_linter(): + if not USE_MYPY: + remove_package_file("py.typed") + + if not USE_PRE_COMMIT: + remove_project_file(".pre-commit-config.yaml") + + if not USE_PRETTIER: + remove_project_file(".prettierrc.yaml") + remove_project_file(".prettierignore") + + # keep this one at the end + if USE_PRETTIER: + subprocess.call([ + "npx", + "--yes", + "prettier", + "--write", + "--ignore-unknown", + PROJECT_DIRECTORY + ]) + def prepare_git() -> None: git_https_origin = http2ssh("{{cookiecutter.git_https_origin}}") @@ -362,19 +387,12 @@ def add_binding_source_files(): pass -def clean_up_mypy(): - if not USE_MYPY: - remove_package_file("py.typed") - - def post_gen(): - # keep this one first, because it changes the package folder clean_up_project_layout() add_binding_source_files() clean_up_automation() clean_up_cli() - clean_up_mypy() clean_up_code_of_conduct() clean_up_conda() clean_up_containers() @@ -382,7 +400,10 @@ def post_gen(): clean_up_governance() clean_up_roadmap() clean_up_build_system() - clean_up_prettier() + clean_up_tests() + + # keep it before the prepare_git function call + clean_up_linter() # keep it at the end, because it will create a new git commit prepare_git() diff --git a/src/scicookie/{{cookiecutter.project_slug}}/.makim.yaml b/src/scicookie/{{cookiecutter.project_slug}}/.makim.yaml index c4e5c2c8..4b9f6a13 100644 --- a/src/scicookie/{{cookiecutter.project_slug}}/.makim.yaml +++ b/src/scicookie/{{cookiecutter.project_slug}}/.makim.yaml @@ -6,7 +6,7 @@ version: 1.0 groups: clean: - targets: + tasks: all: help: Clean unnecessary temporary files run: | @@ -26,7 +26,7 @@ groups: find . -name '*~' -exec rm -f {} + docs: - targets: + tasks: build: help: Build documentation run: | @@ -47,7 +47,7 @@ groups: preview: help: Preview documentation page locally dependencies: - - target: docs.build + - task: docs.build run: | {%- if cookiecutter.documentation_engine == "jupyter-book" %} cd docs/_build/html/ && python -m http.server @@ -60,7 +60,7 @@ groups: {%- endif %} tests: - targets: + tasks: linter: help: Run linter tools run: | @@ -79,16 +79,22 @@ groups: type: string default: "-vv" run: | + {%- if cookiecutter.use_pytest == "yes" %} pytest {{ "${{ args.path }} ${{ args.params }}" }} + {%- elif cookiecutter.use_hypothesis == "yes" %} + python -m unittest discover + {%- else %} + echo "No test library installed." + {%- endif %} ci: help: run the sames tests executed on CI dependencies: - - target: tests.unit - - target: tests.linter + - task: tests.unit + - task: tests.linter package: - targets: + tasks: build: help: "Build the package" run: | @@ -124,7 +130,7 @@ groups: -p "@google/semantic-release-replace-plugin" \ semantic-release - targets: + tasks: ci: help: run semantic release on CI run: {{ "${{ vars.app }} --ci" }} diff --git a/src/scicookie/{{cookiecutter.project_slug}}/Makefile b/src/scicookie/{{cookiecutter.project_slug}}/Makefile index 0bacd087..b2714a27 100644 --- a/src/scicookie/{{cookiecutter.project_slug}}/Makefile +++ b/src/scicookie/{{cookiecutter.project_slug}}/Makefile @@ -70,7 +70,7 @@ test: ## run tests quickly with the default Python {%- elif cookiecutter.use_hypothesis == "yes" %} python -m unittest discover {%- else %} - @echo "No test library selected." + @echo "No test library installed." {%- endif %} {% if cookiecutter.documentation_engine == 'mkdocs' -%} diff --git a/src/scicookie/{{cookiecutter.project_slug}}/build-system/base-pyproject.toml b/src/scicookie/{{cookiecutter.project_slug}}/build-system/base-pyproject.toml index 85be1d30..b72d6d0a 100644 --- a/src/scicookie/{{cookiecutter.project_slug}}/build-system/base-pyproject.toml +++ b/src/scicookie/{{cookiecutter.project_slug}}/build-system/base-pyproject.toml @@ -86,4 +86,5 @@ warn_unused_ignores = true warn_redundant_casts = true warn_unused_configs = true {% endif -%} -{#- keep this line at the end of the file -#} +{# keep this line at the end of the file #} +# Add more configuration here! diff --git a/src/scicookie/{{cookiecutter.project_slug}}/build-system/deps-pyproject.toml b/src/scicookie/{{cookiecutter.project_slug}}/build-system/deps-pyproject.toml index abe2b076..913389d9 100644 --- a/src/scicookie/{{cookiecutter.project_slug}}/build-system/deps-pyproject.toml +++ b/src/scicookie/{{cookiecutter.project_slug}}/build-system/deps-pyproject.toml @@ -50,6 +50,16 @@ dynamic = ["version"] {% endif -%} requires-python = ">=3.8.1,<4" dependencies = [ + # note: add your dependencies here +] +{# keep this line here #} +{%- if cookiecutter.build_system == "pdm" %} +[tool.pdm.dev-dependencies] +{%- else %} +# NOTE: it is not actually optional, instead it is development dependencies +[project.optional-dependencies] +{%- endif %} +dev = [ {#- keep this line here -#} {%- if cookiecutter.build_system in ["setuptools", "pybind11"] %} "build>=0.10.0", @@ -91,7 +101,7 @@ dependencies = [ "pydocstyle >= 6.3.0", {%- endif -%} {%- if cookiecutter.use_makim == "yes" %} - "makim>=1.14.0,<1.15", + "makim == 1.15.1", {%- endif -%} {%- if cookiecutter.use_vulture == "yes" %} "vulture >= 2.7", @@ -115,7 +125,6 @@ dependencies = [ "mkdocs-material >= 9.1.15", "mkdocstrings >= 0.21.2", "mkdocstrings-python >= 1.1.2", -{# keep this line here #} {%- elif cookiecutter.documentation_engine == 'sphinx' %} "Sphinx >= 6.2.1", "sphinx-rtd-theme >= 1.2.2", @@ -123,15 +132,13 @@ dependencies = [ "myst-parser >= 0.19.2", "nbsphinx >= 0.9.2", "pandoc >= 2.3", -{# keep this line here #} {%- elif cookiecutter.documentation_engine == 'jupyter-book' %} "jupyter-book >= 0.15.1", "myst-parser >= 0.18.1", -{# keep this line here #} {%- elif cookiecutter.documentation_engine == 'quarto' %} "quarto-cli >= 1.4.550", "quartodoc >= 0.7.2", -{% endif -%} +{%- endif %} # 'PosixPath' object has no attribute 'endswith' "virtualenv<=20.25.1", ] @@ -141,3 +148,4 @@ Homepage = "{{ cookiecutter.project_url }}" "Bug Tracker" = "{{ cookiecutter.project_url }}/issues" Discussions = "{{ cookiecutter.project_url }}/discussions" Changelog = "{{ cookiecutter.project_url }}/releases" +{#- keep this line at the end of the file -#} diff --git a/src/scicookie/{{cookiecutter.project_slug}}/build-system/poetry-pyproject.toml b/src/scicookie/{{cookiecutter.project_slug}}/build-system/poetry-pyproject.toml index 34481386..1181a362 100644 --- a/src/scicookie/{{cookiecutter.project_slug}}/build-system/poetry-pyproject.toml +++ b/src/scicookie/{{cookiecutter.project_slug}}/build-system/poetry-pyproject.toml @@ -115,7 +115,7 @@ quarto-cli = ">=1.4.550" quartodoc = ">=0.7.2" {% endif -%} {%- if cookiecutter.use_makim == "yes" -%} -makim = ">=1.14.0,<1.15" +makim = "1.15.1" {% endif -%} # 'PosixPath' object has no attribute 'endswith' virtualenv = "<=20.25.1" diff --git a/src/scicookie/{{cookiecutter.project_slug}}/docs/contributing.md b/src/scicookie/{{cookiecutter.project_slug}}/docs/contributing.md index 9dcdebdb..7cd2ca65 100644 --- a/src/scicookie/{{cookiecutter.project_slug}}/docs/contributing.md +++ b/src/scicookie/{{cookiecutter.project_slug}}/docs/contributing.md @@ -112,101 +112,96 @@ If you are proposing a feature: ## Get Started! -Ready to contribute? Here’s how to set up `{{ cookiecutter.project_slug}}` for local +Ready to contribute? Here’s how to set up `{{ cookiecutter.project_slug }}` for local development. 1. Fork the `{{ cookiecutter.project_slug }}` repo on GitHub. - -2. Clone your fork locally: - - ``` - git clone git@github.com:your_name_here/{{ cookiecutter.project_slug }}.git - ``` - -3. Install your local copy into a virtualenv. This is how you set up your fork - for local development: - - ``` - cd {{cookiecutter.project_slug }}/ - python -m venv env - ``` - - Using poetry: - - ``` - poetry install --with dev - ``` - - To get poetry, just pip install it into your virtualenv. - - Alternatively, using pip: - - ``` - pip install -e . - ``` - -4. Create a branch for local development: - - ``` - git checkout -b name-of-your-bugfix-or-feature - ``` - - Now you can make your changes locally. - -5. `{{ cookiecutter.project_slug }}` uses a set of `pre-commit` hooks and the `pre-commit` - bot to format, type-check, and prettify the codebase. The hooks can be - installed locally using - - - ``` - pre-commit install - ``` - - This would run the checks every time a commit is created locally. The checks - will only run on the files modified by that commit, but the checks can be - triggered for all the files using - - - ``` - pre-commit run --all-files - ``` - - If you would like to skip the failing checks and push the code for further - discussion, use the `--no-verify` option with `git commit`. - -6. `{{ cookiecutter.project_slug }}` is tested with `pytest`. `pytest` is responsible for - testing the code, whose configuration is available in pyproject.toml. - Additionally, `{{ cookiecutter.project_slug }}` also uses `pytest-cov` to calculate the - coverage of these unit tests. - - #### Running tests locally - - The tests can be executed using the `test` dependencies of - `{{ cookiecutter.project_slug }}` in the following way - - - ``` - python -m pytest - ``` - - #### Running tests with coverage locally - - The coverage value can be obtained while running the tests using - `pytest-cov` in the following way - - - ``` - python -m pytest --cov={{ cookiecutter.project_slug }} tests/ - ``` - - A much more detailed guide on testing with `pytest` is available - [here](https://docs.pytest.org/en/8.0.x/how-to/index.html). - -7. Commit your changes and push your branch to GitHub:: - - ``` - git add . - git commit -m “Your detailed description of your changes.” - git push origin name-of-your-bugfix-or-feature - ``` - -8. Submit a pull request through the GitHub website. +1. Clone your fork locally and change to the directory of your project: +```bash +$ git clone git@github.com:your_name_here/{{ cookiecutter.project_slug }}.git +$ cd {{cookiecutter.project_slug }}/ +``` +{% if cookiecutter.git_https_upstream -%} +Also, create a remote to the upstream repository, you will need that later: +```bash +$ git remote add upstream {{ cookiecutter.git_https_upstream }} +$ git fetch --all +``` +{% endif -%} +1. Prepare and use virtual environment: +{%- if cookiecutter.use_conda == "yes" %} +If you don't have yet conda installed in your machine, you can check the +installation steps here: + +After that, ensure that conda is already available in your terminal session and +run: +```bash +$ conda env create env create --file conda/dev.yaml +$ conda activate {{ cookiecutter.package_slug }} +``` +Note: you can use `mamba env create` instead, if you have it already installed, +in order to boost the installation step. +{% elif cookiecutter.use_pyenv == "yes" -%} +Create your environment using `virtualenv`: +```bash +$ virtualenv {{ cookiecutter.package_slug }} +$ source {{ cookiecutter.package_slug }}/bin/activate +``` +{% else -%} +We highly recommend you to use `conda` for managing virtual environment, but +you can use any other one of your preference. +{% endif -%} +1. Install the dependencies: +Now, you can already install the dependencies for the project: +{% if cookiecutter.build_system == "poetry" -%} +```bash +$ poetry install +``` +{%- elif cookiecutter.build_system == "pdm" -%} +```bash +$ pdm install +``` +{%- elif cookiecutter.build_system == "flit" -%} +```bash +$ flit install +``` +{%- else -%} +```bash +$ pip install -e ".[dev]" +``` +{%- endif -%} +{% if cookiecutter.use_pre_commit == "yes" %} +1. `{{ cookiecutter.project_slug }}` uses a set of `pre-commit` hooks to +improve code quality. The hooks can be installed locally using: +```bash +$ pre-commit install +``` +This would run the checks every time a `git commit` is executed locally. +Usually, the verification will only run on the files modified by that commit, +but the verification can also be triggered for all the files using: +```bash +$ pre-commit run --all-files +``` +If you would like to skip the failing checks and push the code for further +discussion, use the `--no-verify` option with `git commit`. +{% endif -%} +{% if cookiecutter.use_pytest == "yes" %} +1. This project uses `pytest` as a testing tool. `pytest` is responsible for +testing the code, whose configuration is available in pyproject.toml. +Additionally, this project also uses `pytest-cov` to calculate the coverage of +these unit tests. For more information, check the section about tests later in +this document. +{% elif cookiecutter.use_hypothesis == "yes" %} +1. This project uses `hypothesis` as a testing tool. For more information, +please check its official documentation +{% endif -%} +1. Commit your changes and push your branch to GitHub:: +``` +$ git add . +$ git commit -m "Your detailed description of your changes."" +$ git push origin name-of-your-bugfix-or-feature +``` +1. Submit a pull request through the GitHub website. ## Pull Request Guidelines @@ -218,20 +213,47 @@ Before you submit a pull request, check that it meets these guidelines: the list in README.rst. 3. The pull request should work for Python >= 3.8. -## Tips +{% if cookiecutter.use_pytest == "yes" -%} +## Running tests locally -To run a subset of tests: +The tests can be executed using the `test` dependencies of +`{{ cookiecutter.project_slug }}` in the following way: -{% if cookiecutter.use_pytest == "yes" -%} +```bash +$ python -m pytest ``` -pytest tests.test_{{ cookiecutter.package_slug }} + +{% if cookiecutter.use_coverage == "yes" -%} +### Running tests with coverage locally + +The coverage value can be obtained while running the tests using +`pytest-cov` in the following way: + +```bash +$ python -m pytest --cov={{ cookiecutter.project_slug }} tests/ ``` + +A much more detailed guide on testing with `pytest` is available +[here](https://docs.pytest.org/en/8.0.x/how-to/index.html). {%- endif %} -{% if cookiecutter.use_hypothesis == "yes" -%} -``` -python -m unittest discover +{%- endif %} + +{% if cookiecutter.use_makim == "yes" -%} +## Automation Tasks with Makim + +This project uses `makim` as an automation tool. Please, check the +`.makim.yaml` file to check all the tasks available or run: + +```bash +$ makim --help ``` +{% elif cookiecutter.use_make == "yes" -%} +## Automation Tasks with Make + +This project uses `make` as an automation tool. Please, check the `Makefile` +to check all the tasks (targets) available. {%- endif %} + ## Release This project uses semantic-release in order to cut a new release based on the @@ -266,7 +288,9 @@ The table below shows which commit message gets you which release type when | `fix(pencil): stop graphite breaking when pressure is applied` | Fix Release | | `feat(pencil): add 'graphiteWidth' option` | Feature Release | | `perf(pencil): remove graphiteWidth option` | Chore | -| `BREAKING CHANGE: The graphiteWidth option has been removed` | Breaking Release | +| `feat(pencil)!: The graphiteWidth option has been removed` | Breaking Release | + +Note: For a breaking change release, uses `!` at the end of the message prefix. source: diff --git a/src/scicookie/{{cookiecutter.project_slug}}/tests/test_{{cookiecutter.package_slug}}.py b/src/scicookie/{{cookiecutter.project_slug}}/tests/test_main.py similarity index 100% rename from src/scicookie/{{cookiecutter.project_slug}}/tests/test_{{cookiecutter.package_slug}}.py rename to src/scicookie/{{cookiecutter.project_slug}}/tests/test_main.py diff --git a/tests/smoke/automation.sh b/tests/smoke/automation.sh index e7af8623..07ca9c17 100755 --- a/tests/smoke/automation.sh +++ b/tests/smoke/automation.sh @@ -4,5 +4,5 @@ set -e SMOKE_DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )" -. ${SMOKE_DIR}/base.sh "use_makim=yes use_make=no" -. ${SMOKE_DIR}/base.sh "use_makim=no use_make=yes" +. ${SMOKE_DIR}/base.sh "use_makim=yes" +. ${SMOKE_DIR}/base.sh "use_make=yes" diff --git a/tests/smoke/base.sh b/tests/smoke/base.sh index 0406c72b..2d584258 100755 --- a/tests/smoke/base.sh +++ b/tests/smoke/base.sh @@ -11,6 +11,26 @@ if [ "$(which conda)" == "" ]; then exit 1 fi +input_params="$1" + +if [[ "${input_params}" == *"use_conda=yes"* ]] || [[ "$input_params" == *"use_pyenv=yes"* ]]; then + echo "Virtual environment defined." +else + input_params="use_conda=yes ${input_params}" +fi + +if [[ "${input_params}" == *"use_makim=yes"* ]] || [[ "$input_params" == *"use_make=yes"* ]]; then + echo "Automation task tool defined." +else + input_params="use_makim=yes ${input_params}" +fi + +if [[ "${input_params}" == *"use_pre_commit=yes"* ]]; then + echo "pre-commit tool defined." +else + input_params="use_pre_commit=yes ${input_params}" +fi + ENV_NAME=osl-python-package OUTPUT_DIR="/tmp/osl" @@ -20,15 +40,25 @@ mkdir -p "${OUTPUT_DIR}" cookieninja --no-input \ --output-dir "${OUTPUT_DIR}" \ "${PROJECT_PATH}/src/scicookie" \ - ${1} + ${input_params} cd "${OUTPUT_DIR}/${ENV_NAME}" -set +x -eval "$(conda shell.bash hook)" -mamba env create --file conda/dev.yaml --name "${ENV_NAME}" --yes -conda activate "${ENV_NAME}" -set -x + +if [[ "${input_params}" == *"use_conda=yes"* ]]; then + set +x + eval "$(conda shell.bash hook)" + mamba env create --file conda/dev.yaml --name "${ENV_NAME}" --yes + conda activate "${ENV_NAME}" + set -x +fi + +if [[ "$input_params" == *"use_pyenv=yes"* ]]; then + set +x + virtualenv "${ENV_NAME}" + source "${ENV_NAME}/bin/activate" + set -x +fi # remove any path to scicookie environment export PATH=$(echo $PATH| sed -E "s/[^:]+\/scicookie\/[^:]+//g") @@ -38,21 +68,21 @@ if command -v poetry &> /dev/null; then elif command -v flit &> /dev/null; then flit install elif command -v meson &> /dev/null; then - pip install . + pip install ".[dev]" elif command -v pdm &> /dev/null; then pdm install elif command -v hatch &> /dev/null; then - pip install . + pip install ".[dev]" elif command -v maturin &> /dev/null; then - pip install . + pip install ".[dev]" elif [ "$(pip list|grep -c scikit_build_core)" -ne "0" ]; then - pip install . + pip install ".[dev]" elif [ "$(pip list|grep -c pybind11)" -ne "0" ]; then # Assuming you are inside the root of the CMake source directory - pip install . + pip install ".[dev]" else # use setuptools - pip install . + pip install ".[dev]" fi ipython kernel install --name "python3" --user