From 415c7b7e07fb9c56d6a92f0b456e67b8c841dfc8 Mon Sep 17 00:00:00 2001 From: Pablo Cingolani Date: Sat, 28 Sep 2024 06:29:15 -0400 Subject: [PATCH 1/3] Project updated --- src/main/java/org/snpeff/vcf/VcfHeaderInfo.java | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/src/main/java/org/snpeff/vcf/VcfHeaderInfo.java b/src/main/java/org/snpeff/vcf/VcfHeaderInfo.java index 63339a14..0d999a64 100644 --- a/src/main/java/org/snpeff/vcf/VcfHeaderInfo.java +++ b/src/main/java/org/snpeff/vcf/VcfHeaderInfo.java @@ -153,6 +153,11 @@ public int getNumber() { return number; } + public String getNumberString() { + if(number > 0) return Integer.toString(number); + return vcfInfoNumber.toString(); + } + public VcfInfoNumber getVcfInfoNumber() { return vcfInfoNumber; } From 26fc6fd22df5a120d18643e13485da0e556a3579 Mon Sep 17 00:00:00 2001 From: Pablo Cingolani Date: Sat, 28 Sep 2024 06:46:00 -0400 Subject: [PATCH 2/3] Project updated --- test_04_TestCasesEff.csv | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/test_04_TestCasesEff.csv b/test_04_TestCasesEff.csv index f518ddac..50e721da 100644 --- a/test_04_TestCasesEff.csv +++ b/test_04_TestCasesEff.csv @@ -3,8 +3,8 @@ Name , Value Genome , testHg3770Chr22 -Date , 2024-09-22 16:14 -SnpEff_version , SnpEff 5.2c (build 2024-09-21 11:42), by Pablo Cingolani +Date , 2024-09-28 06:44 +SnpEff_version , SnpEff 5.2d (build 2024-09-28 06:37), by Pablo Cingolani Command_line_arguments , SnpEff -csvStats test_04_TestCasesEff.csv testHg3770Chr22 tests/integration/eff/eff_sort.vcf Warnings , 1096 Number_of_lines_in_input_file, 1205 From c365def70fefb09019add5090b20b383913148d6 Mon Sep 17 00:00:00 2001 From: Pablo Cingolani Date: Sat, 28 Sep 2024 08:03:57 -0400 Subject: [PATCH 3/3] Project updated --- src/main/java/org/snpeff/SnpEff.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/main/java/org/snpeff/SnpEff.java b/src/main/java/org/snpeff/SnpEff.java index 1ceec7ec..e715a915 100644 --- a/src/main/java/org/snpeff/SnpEff.java +++ b/src/main/java/org/snpeff/SnpEff.java @@ -94,7 +94,7 @@ public enum OutputFormat { // Version info public static final String SOFTWARE_NAME = "SnpEff"; - public static final String REVISION = "d"; + public static final String REVISION = "e"; public static final String BUILD = Gpr.compileTimeStamp(SnpEff.class); public static final String BUILD_DATE = Gpr.compileDate(SnpEff.class); public static final String VERSION_MAJOR = "5.2";