diff --git a/src/pyrovelocity/plots/_report.py b/src/pyrovelocity/plots/_report.py index 39af6fa9b..74a08178f 100644 --- a/src/pyrovelocity/plots/_report.py +++ b/src/pyrovelocity/plots/_report.py @@ -57,9 +57,10 @@ def plot_report( volcano_data: DataFrame, putative_marker_genes: List[str], selected_genes: List[str], - vector_field_basis: str = "emb", - cell_state: str = "state_info", + vector_field_basis: str = "umap", + cell_state: str = "clusters", state_color_dict: Optional[Dict[str, str]] = None, + boxplot: bool = False, report_file_path: Path | str = "example_plot_report.pdf", figure_file_path: Path | str = "example_report_figure.dill.zst", ) -> FigureBase: @@ -185,6 +186,7 @@ def plot_report( geneset=selected_genes, fig=fig, gs=gs[1, 1:], + boxplot=boxplot, ) rainbowplot(