From a79ac55220b197fd2406aefed0ef4316d960bdc3 Mon Sep 17 00:00:00 2001 From: cmr-umm-publisher bot Date: Tue, 11 Jul 2023 18:54:04 +0000 Subject: [PATCH 1/8] /version 0.5.0a5 --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index e3c4d4f..8c6f557 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "cmr-umm-updater" -version = "0.5.0a4" +version = "0.5.0a5" description = "Github action that publishes UMM-S and UMM-T updates to CMR" authors = ["podaac-cloud-tva "] license = "Apache-2.0" From a8f3c72ba2dd79dec4e823cd9b495b19319cdd9d Mon Sep 17 00:00:00 2001 From: cmr-umm-publisher bot Date: Wed, 12 Jul 2023 18:14:18 +0000 Subject: [PATCH 2/8] /version 0.6.0a1 --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 63d4ea0..cd05702 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "cmr-umm-updater" -version = "0.6.0a0" +version = "0.6.0a1" description = "Github action that publishes UMM-S and UMM-T updates to CMR" authors = ["podaac-cloud-tva "] license = "Apache-2.0" From 5f4d3245229c9da63d8452b5c602b1b8ec448dcc Mon Sep 17 00:00:00 2001 From: sliu008 <69875423+sliu008@users.noreply.github.com> Date: Mon, 13 Nov 2023 16:02:40 -0800 Subject: [PATCH 3/8] add umm_version (#23) --- .flake8 | 4 + .pylintrc | 505 ++++++++++++++++++ action.yml | 8 + entrypoint.sh | 9 +- podaac/umms_updater/umms_updater.py | 13 +- podaac/umms_updater/util/create_assoc.py | 2 +- podaac/umms_updater/util/token_req.py | 2 +- podaac/ummt_updater/ummt_updater.py | 14 +- podaac/ummt_updater/util/create_assoc.py | 2 +- podaac/ummt_updater/util/token_req.py | 2 +- poetry.lock | 619 +++++++++++------------ pyproject.toml | 2 +- 12 files changed, 836 insertions(+), 346 deletions(-) create mode 100644 .flake8 create mode 100644 .pylintrc diff --git a/.flake8 b/.flake8 new file mode 100644 index 0000000..1137baa --- /dev/null +++ b/.flake8 @@ -0,0 +1,4 @@ +[flake8] +#ignore = ... +max-line-length=180 + diff --git a/.pylintrc b/.pylintrc new file mode 100644 index 0000000..57ffeac --- /dev/null +++ b/.pylintrc @@ -0,0 +1,505 @@ +[MASTER] + +# A comma-separated list of package or module names from where C extensions may +# be loaded. Extensions are loading into the active Python interpreter and may +# run arbitrary code. +extension-pkg-whitelist=numpy + +# Add files or directories to the blacklist. They should be base names, not +# paths. +ignore=CVS + +# Add files or directories matching the regex patterns to the blacklist. The +# regex matches against base names, not paths. +ignore-patterns= + +# Python code to execute, usually for sys.path manipulation such as +# pygtk.require(). +#init-hook= + +# Use multiple processes to speed up Pylint. Specifying 0 will auto-detect the +# number of processors available to use. +jobs=1 + +# Control the amount of potential inferred values when inferring a single +# object. This can help the performance when dealing with large functions or +# complex, nested conditions. +limit-inference-results=100 + +# List of plugins (as comma separated values of python modules names) to load, +# usually to register additional checkers. +load-plugins= + +# Pickle collected data for later comparisons. +persistent=yes + +# Specify a configuration file. +#rcfile= + +# When enabled, pylint would attempt to guess common misconfiguration and emit +# user-friendly hints instead of false-positive error messages. +suggestion-mode=yes + +# Allow loading of arbitrary C extensions. Extensions are imported into the +# active Python interpreter and may run arbitrary code. +unsafe-load-any-extension=no + + +[MESSAGES CONTROL] + +# Only show warnings with the listed confidence levels. Leave empty to show +# all. Valid levels: HIGH, INFERENCE, INFERENCE_FAILURE, UNDEFINED. +confidence= + +# Disable the message, report, category or checker with the given id(s). You +# can either give multiple identifiers separated by comma (,) or put this +# option multiple times (only on the command line, not in the configuration +# file where it should appear only once). You can also use "--disable=all" to +# disable everything first and then reenable specific checks. For example, if +# you want to run only the similarities checker, you can use "--disable=all +# --enable=similarities". If you want to run only the classes checker, but have +# no Warning level messages displayed, use "--disable=all --enable=classes +# --disable=W". +disable=raw-checker-failed, + bad-inline-option, + locally-disabled, + file-ignored, + suppressed-message, + useless-suppression, + deprecated-pragma, + use-symbolic-message-instead, + too-many-arguments, + too-many-locals, + line-too-long, + broad-exception-raised, + duplicate-code +# Enable the message, report, category or checker with the given id(s). You can +# either give multiple identifier separated by comma (,) or put this option +# multiple time (only on the command line, not in the configuration file where +# it should appear only once). See also the "--disable" option for examples. +enable=c-extension-no-member + + +[REPORTS] + +# Python expression which should return a note less than 10 (10 is the highest +# note). You have access to the variables errors warning, statement which +# respectively contain the number of errors / warnings messages and the total +# number of statements analyzed. This is used by the global evaluation report +# (RP0004). +evaluation=10.0 - ((float(5 * error + warning + refactor + convention) / statement) * 10) + +# Template used to display messages. This is a python new-style format string +# used to format the message information. See doc for all details. +#msg-template= + +# Set the output format. Available formats are text, parseable, colorized, json +# and msvs (visual studio). You can also give a reporter class, e.g. +# mypackage.mymodule.MyReporterClass. +output-format=text + +# Tells whether to display a full report or only the messages. +reports=no + +# Activate the evaluation score. +score=yes + + +[REFACTORING] + +# Maximum number of nested blocks for function / method body +max-nested-blocks=5 + +# Complete name of functions that never returns. When checking for +# inconsistent-return-statements if a never returning function is called then +# it will be considered as an explicit return statement and no message will be +# printed. +never-returning-functions=sys.exit + + +[LOGGING] + +# Format style used to check logging format string. `old` means using % +# formatting, while `new` is for `{}` formatting. +logging-format-style=old + +# Logging modules to check that the string format arguments are in logging +# function parameter format. +logging-modules=logging + + +[SPELLING] + +# Limits count of emitted suggestions for spelling mistakes. +max-spelling-suggestions=4 + +# Spelling dictionary name. Available dictionaries: none. To make it working +# install python-enchant package.. +spelling-dict= + +# List of comma separated words that should not be checked. +spelling-ignore-words= + +# A path to a file that contains private dictionary; one word per line. +spelling-private-dict-file= + +# Tells whether to store unknown words to indicated private dictionary in +# --spelling-private-dict-file option instead of raising a message. +spelling-store-unknown-words=no + + +[MISCELLANEOUS] + +# List of note tags to take in consideration, separated by a comma. +notes=FIXME, + XXX, + TODO + + +[TYPECHECK] + +# List of decorators that produce context managers, such as +# contextlib.contextmanager. Add to this list to register other decorators that +# produce valid context managers. +contextmanager-decorators=contextlib.contextmanager + +# List of members which are set dynamically and missed by pylint inference +# system, and so shouldn't trigger E1101 when accessed. Python regular +# expressions are accepted. +generated-members= + +# Tells whether missing members accessed in mixin class should be ignored. A +# mixin class is detected if its name ends with "mixin" (case insensitive). +ignore-mixin-members=yes + +# Tells whether to warn about missing members when the owner of the attribute +# is inferred to be None. +ignore-none=yes + +# This flag controls whether pylint should warn about no-member and similar +# checks whenever an opaque object is returned when inferring. The inference +# can return multiple potential results while evaluating a Python object, but +# some branches might not be evaluated, which results in partial inference. In +# that case, it might be useful to still emit no-member and other checks for +# the rest of the inferred objects. +ignore-on-opaque-inference=yes + +# List of class names for which member attributes should not be checked (useful +# for classes with dynamically set attributes). This supports the use of +# qualified names. +ignored-classes=optparse.Values,thread._local,_thread._local + +# List of module names for which member attributes should not be checked +# (useful for modules/projects where namespaces are manipulated during runtime +# and thus existing member attributes cannot be deduced by static analysis. It +# supports qualified module names, as well as Unix pattern matching. +ignored-modules= + +# Show a hint with possible names when a member name was not found. The aspect +# of finding the hint is based on edit distance. +missing-member-hint=yes + +# The minimum edit distance a name should have in order to be considered a +# similar match for a missing member name. +missing-member-hint-distance=1 + +# The total number of similar names that should be taken in consideration when +# showing a hint for a missing member. +missing-member-max-choices=1 + + +[VARIABLES] + +# List of additional names supposed to be defined in builtins. Remember that +# you should avoid defining new builtins when possible. +additional-builtins= + +# Tells whether unused global variables should be treated as a violation. +allow-global-unused-variables=yes + +# List of strings which can identify a callback function by name. A callback +# name must start or end with one of those strings. +callbacks=cb_, + _cb + +# A regular expression matching the name of dummy variables (i.e. expected to +# not be used). +dummy-variables-rgx=_+$|(_[a-zA-Z0-9_]*[a-zA-Z0-9]+?$)|dummy|^ignored_|^unused_ + +# Argument names that match this expression will be ignored. Default to name +# with leading underscore. +ignored-argument-names=_.*|^ignored_|^unused_ + +# Tells whether we should check for unused import in __init__ files. +init-import=no + +# List of qualified module names which can have objects that can redefine +# builtins. +redefining-builtins-modules=six.moves,past.builtins,future.builtins,builtins,io + + +[FORMAT] + +# Expected format of line ending, e.g. empty (any line ending), LF or CRLF. +expected-line-ending-format= + +# Regexp for a line that is allowed to be longer than the limit. +ignore-long-lines=^\s*(# )??$ + +# Number of spaces of indent required inside a hanging or continued line. +indent-after-paren=4 + +# String used as indentation unit. This is usually " " (4 spaces) or "\t" (1 +# tab). +indent-string=' ' + +# Maximum number of characters on a single line. +max-line-length=180 + +# Maximum number of lines in a module. +max-module-lines=1000 + +# List of optional constructs for which whitespace checking is disabled. `dict- +# separator` is used to allow tabulation in dicts, etc.: {1 : 1,\n222: 2}. +# `trailing-comma` allows a space between comma and closing bracket: (a, ). +# `empty-line` allows space-only lines. +#no-space-check=trailing-comma, +# dict-separator + +# Allow the body of a class to be on the same line as the declaration if body +# contains single statement. +single-line-class-stmt=no + +# Allow the body of an if to be on the same line as the test if there is no +# else. +single-line-if-stmt=no + + +[SIMILARITIES] + +# Ignore comments when computing similarities. +ignore-comments=yes + +# Ignore docstrings when computing similarities. +ignore-docstrings=yes + +# Ignore imports when computing similarities. +ignore-imports=no + +# Minimum lines number of a similarity. +min-similarity-lines=4 + + +[BASIC] + +# Naming style matching correct argument names. +argument-naming-style=snake_case + +# Regular expression matching correct argument names. Overrides argument- +# naming-style. +#argument-rgx= + +# Naming style matching correct attribute names. +attr-naming-style=snake_case + +# Regular expression matching correct attribute names. Overrides attr-naming- +# style. +#attr-rgx= + +# Bad variable names which should always be refused, separated by a comma. +bad-names=foo, + bar, + baz, + toto, + tutu, + tata + +# Naming style matching correct class attribute names. +class-attribute-naming-style=any + +# Regular expression matching correct class attribute names. Overrides class- +# attribute-naming-style. +#class-attribute-rgx= + +# Naming style matching correct class names. +class-naming-style=PascalCase + +# Regular expression matching correct class names. Overrides class-naming- +# style. +#class-rgx= + +# Naming style matching correct constant names. +const-naming-style=UPPER_CASE + +# Regular expression matching correct constant names. Overrides const-naming- +# style. +#const-rgx= + +# Minimum line length for functions/classes that require docstrings, shorter +# ones are exempt. +docstring-min-length=-1 + +# Naming style matching correct function names. +function-naming-style=snake_case + +# Regular expression matching correct function names. Overrides function- +# naming-style. +#function-rgx= + +# Good variable names which should always be accepted, separated by a comma. +good-names=i, + j, + k, + ex, + Run, + _ + +# Include a hint for the correct naming format with invalid-name. +include-naming-hint=no + +# Naming style matching correct inline iteration names. +inlinevar-naming-style=any + +# Regular expression matching correct inline iteration names. Overrides +# inlinevar-naming-style. +#inlinevar-rgx= + +# Naming style matching correct method names. +method-naming-style=snake_case + +# Regular expression matching correct method names. Overrides method-naming- +# style. +#method-rgx= + +# Naming style matching correct module names. +module-naming-style=snake_case + +# Regular expression matching correct module names. Overrides module-naming- +# style. +#module-rgx= + +# Colon-delimited sets of names that determine each other's naming style when +# the name regexes allow several styles. +name-group= + +# Regular expression which should only match function or class names that do +# not require a docstring. +no-docstring-rgx=^_ + +# List of decorators that produce properties, such as abc.abstractproperty. Add +# to this list to register other decorators that produce valid properties. +# These decorators are taken in consideration only for invalid-name. +property-classes=abc.abstractproperty + +# Naming style matching correct variable names. +variable-naming-style=snake_case + +# Regular expression matching correct variable names. Overrides variable- +# naming-style. +#variable-rgx= + + +[STRING] + +# This flag controls whether the implicit-str-concat-in-sequence should +# generate a warning on implicit string concatenation in sequences defined over +# several lines. +check-str-concat-over-line-jumps=no + + +[IMPORTS] + +# Allow wildcard imports from modules that define __all__. +allow-wildcard-with-all=no + +# Analyse import fallback blocks. This can be used to support both Python 2 and +# 3 compatible code, which means that the block might have code that exists +# only in one or another interpreter, leading to false positives when analysed. +analyse-fallback-blocks=no + +# Deprecated modules which should not be used, separated by a comma. +deprecated-modules=optparse,tkinter.tix + +# Create a graph of external dependencies in the given file (report RP0402 must +# not be disabled). +ext-import-graph= + +# Create a graph of every (i.e. internal and external) dependencies in the +# given file (report RP0402 must not be disabled). +import-graph= + +# Create a graph of internal dependencies in the given file (report RP0402 must +# not be disabled). +int-import-graph= + +# Force import order to recognize a module as part of the standard +# compatibility libraries. +known-standard-library= + +# Force import order to recognize a module as part of a third party library. +known-third-party=enchant + + +[CLASSES] + +# List of method names used to declare (i.e. assign) instance attributes. +defining-attr-methods=__init__, + __new__, + setUp + +# List of member names, which should be excluded from the protected access +# warning. +exclude-protected=_asdict, + _fields, + _replace, + _source, + _make + +# List of valid names for the first argument in a class method. +valid-classmethod-first-arg=cls + +# List of valid names for the first argument in a metaclass class method. +valid-metaclass-classmethod-first-arg=cls + + +[DESIGN] + +# Maximum number of arguments for function / method. +max-args=5 + +# Maximum number of attributes for a class (see R0902). +max-attributes=10 + +# Maximum number of boolean expressions in an if statement. +max-bool-expr=5 + +# Maximum number of branch for function / method body. +max-branches=12 + +# Maximum number of locals for function / method body. +max-locals=25 + +# Maximum number of parents for a class (see R0901). +max-parents=7 + +# Maximum number of public methods for a class (see R0904). +max-public-methods=20 + +# Maximum number of return / yield for function / method body. +max-returns=6 + +# Maximum number of statements in function / method body. +max-statements=50 + +# Minimum number of public methods for a class (see R0903). +min-public-methods=2 + + +[EXCEPTIONS] + +# Exceptions that will emit a warning when being caught. Defaults to +# "BaseException, Exception". +#overgeneral-exceptions=BaseException, +# Exception + +disable=consider-using-f-string, W1514, R0402, R1730 diff --git a/action.yml b/action.yml index 25df8fd..c8ec439 100644 --- a/action.yml +++ b/action.yml @@ -50,6 +50,12 @@ inputs: options: - 'true' - 'false' + umm_version: + description: "umm schema version" + required: false + default: '' + type: string + runs: using: 'docker' image: 'Dockerfile' @@ -62,3 +68,5 @@ runs: - ${{inputs.disable_removal}} - ${{inputs.umm_type}} - ${{inputs.use_associations}} + - ${{inputs.umm_version}} + diff --git a/entrypoint.sh b/entrypoint.sh index 7939082..9c57027 100755 --- a/entrypoint.sh +++ b/entrypoint.sh @@ -10,6 +10,7 @@ timeout=${5:-30} disable_removal=$6 umm_type=$7 use_associations=${8:-true} +umm_version=$9 # Replace version placeholder with actual version jq --arg a $version '.Version = $a' "$file" > "cmr/cmr.json" @@ -42,14 +43,14 @@ fi # Execute the command if [[ -n $launchpad_token ]]; then if [[ $use_associations == "true" ]]; then - $command -r -d -f "cmr/cmr.json" -a "cmr/${env}_associations.txt" -p "$provider" -e "$env" -t "$launchpad_token" -to "$timeout" -cu "$cmr_user" -cp "$cmr_pass" + $command -r -d -f "cmr/cmr.json" -a "cmr/${env}_associations.txt" -p "$provider" -e "$env" -t "$launchpad_token" -to "$timeout" -cu "$cmr_user" -cp "$cmr_pass" -uv "$umm_version" else - $command -r -d -f "cmr/cmr.json" -p "$provider" -e "$env" -t "$launchpad_token" -to "$timeout" -cu "$cmr_user" -cp "$cmr_pass" + $command -r -d -f "cmr/cmr.json" -p "$provider" -e "$env" -t "$launchpad_token" -to "$timeout" -cu "$cmr_user" -cp "$cmr_pass" -uv "$umm_version" fi else if [[ $use_associations == "true" ]]; then - $command -r -d -f "cmr/cmr.json" -a "cmr/${env}_associations.txt" -p "$provider" -e "$env" -cu "$cmr_user" -cp "$cmr_pass" -to "$timeout" + $command -r -d -f "cmr/cmr.json" -a "cmr/${env}_associations.txt" -p "$provider" -e "$env" -cu "$cmr_user" -cp "$cmr_pass" -to "$timeout" -uv "$umm_version" else - $command -r -d -f "cmr/cmr.json" -p "$provider" -e "$env" -cu "$cmr_user" -cp "$cmr_pass" -to "$timeout" + $command -r -d -f "cmr/cmr.json" -p "$provider" -e "$env" -cu "$cmr_user" -cp "$cmr_pass" -to "$timeout" -uv "$umm_version" fi fi \ No newline at end of file diff --git a/podaac/umms_updater/umms_updater.py b/podaac/umms_updater/umms_updater.py index 5344a32..a144d5a 100755 --- a/podaac/umms_updater/umms_updater.py +++ b/podaac/umms_updater/umms_updater.py @@ -99,11 +99,16 @@ def parse_args(): help='Set timeout on requests', required=False, type=int, default=30) - + parser.add_argument('-r', '--disable_removal', action='store_false', help='Disable CMR association removal during sync event', required=False) + parser.add_argument('-uv', '--umm_version', + help='umm version were trying to update', + required=False, + default="1.3.4") + args = parser.parse_args() if not args.token and not(args.cmr_pass and args.cmr_user): parser.error('No credentials provided, add -t or -cu and -cp') @@ -194,8 +199,12 @@ def main(args): current_token = args.token provider = args.provider + umm_version = args.umm_version + if not umm_version: + umm_version = '1.3.4' + header = { - 'Content-type': "application/vnd.nasa.cmr.umm+json;version=1.3.4", + 'Content-type': f'application/vnd.nasa.cmr.umm+json;version={umm_version}', 'Authorization': str(current_token), } diff --git a/podaac/umms_updater/util/create_assoc.py b/podaac/umms_updater/util/create_assoc.py index a2c4aa5..8a1fb95 100644 --- a/podaac/umms_updater/util/create_assoc.py +++ b/podaac/umms_updater/util/create_assoc.py @@ -63,7 +63,7 @@ def current_association(concept_id, url_prefix, header, timeout=30): return None -def sync_association(cmr_env, concept_id, current_token, association, timeout=30, remove_collection: bool=True): +def sync_association(cmr_env, concept_id, current_token, association, timeout=30, remove_collection: bool = True): """ Synchronize association file with cmr associations Parameters diff --git a/podaac/umms_updater/util/token_req.py b/podaac/umms_updater/util/token_req.py index 3729931..cece301 100755 --- a/podaac/umms_updater/util/token_req.py +++ b/podaac/umms_updater/util/token_req.py @@ -44,7 +44,7 @@ def token(cmr_env, cmr_user, cmr_pass): f"\"password\":\"{cmr_pass}\",\"client_id\":\"client\"," \ f"\"user_ip_address\":\"{ip_address}\"}}}}" try: - req = post(url, json=json.loads(json_payload), headers=header) + req = post(url, json=json.loads(json_payload), headers=header, timeout=120) LOGGER.debug("Response from request for token: %s", req.text) req.raise_for_status() except exceptions.HTTPError as err: diff --git a/podaac/ummt_updater/ummt_updater.py b/podaac/ummt_updater/ummt_updater.py index cd850b5..3954eb9 100644 --- a/podaac/ummt_updater/ummt_updater.py +++ b/podaac/ummt_updater/ummt_updater.py @@ -99,11 +99,16 @@ def parse_args(): help='Set timeout on requests', required=False, type=int, default=30) - + parser.add_argument('-r', '--disable_removal', action='store_false', help='Disable CMR association removal during sync event', required=False) + parser.add_argument('-uv', '--umm_version', + help='umm version were trying to update', + required=False, + default="1.0") + args = parser.parse_args() if not args.token and not(args.cmr_pass and args.cmr_user): parser.error('No credentials provided, add -t or -cu and -cp') @@ -195,9 +200,14 @@ def main(args): current_token = token_req.token(args.env, args.cmr_user, args.cmr_pass) else: current_token = args.token + provider = args.provider + umm_version = args.umm_version + if not umm_version: + umm_version = '1.0' + header = { - 'Content-type': "application/vnd.nasa.cmr.umm+json;version=1.0", + 'Content-type': f'application/vnd.nasa.cmr.umm+json;version={umm_version}', 'Authorization': str(current_token), } diff --git a/podaac/ummt_updater/util/create_assoc.py b/podaac/ummt_updater/util/create_assoc.py index 01b08ae..d622075 100644 --- a/podaac/ummt_updater/util/create_assoc.py +++ b/podaac/ummt_updater/util/create_assoc.py @@ -63,7 +63,7 @@ def current_association(concept_id, url_prefix, header, timeout=30): return None -def sync_association(cmr_env, concept_id, current_token, association, timeout=30, remove_collection: bool=True): +def sync_association(cmr_env, concept_id, current_token, association, timeout=30, remove_collection: bool = True): """ Synchronize association file with cmr associations Parameters diff --git a/podaac/ummt_updater/util/token_req.py b/podaac/ummt_updater/util/token_req.py index f0601f9..a40c901 100755 --- a/podaac/ummt_updater/util/token_req.py +++ b/podaac/ummt_updater/util/token_req.py @@ -44,7 +44,7 @@ def token(cmr_env, cmr_user, cmr_pass): f"\"password\":\"{cmr_pass}\",\"client_id\":\"client\"," \ f"\"user_ip_address\":\"{ip_address}\"}}}}" try: - req = post(url, json=json.loads(json_payload), headers=header) + req = post(url, json=json.loads(json_payload), headers=header, timeout=120) LOGGER.debug("Response from request for token: %s", req.text) req.raise_for_status() except exceptions.HTTPError as err: diff --git a/poetry.lock b/poetry.lock index 0fa0828..7899f38 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,10 +1,9 @@ -# This file is automatically @generated by Poetry 1.4.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. 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