From 4c9f413be77fb63c8841fc040064e721b260b948 Mon Sep 17 00:00:00 2001 From: Keith Battocchi Date: Tue, 14 Mar 2023 15:40:16 -0400 Subject: [PATCH] Enable GitHub Actions Signed-off-by: Keith Battocchi --- .github/workflows/ci.yml | 230 ++++++++++++++ .github/workflows/publish-documentation.yml | 80 +++++ .github/workflows/publish-package.yml | 117 +++++++ azure-pipelines-steps.yml | 65 ---- azure-pipelines.yml | 333 -------------------- setup.cfg | 4 +- 6 files changed, 429 insertions(+), 400 deletions(-) create mode 100644 .github/workflows/ci.yml create mode 100644 .github/workflows/publish-documentation.yml create mode 100644 .github/workflows/publish-package.yml delete mode 100644 azure-pipelines-steps.yml delete mode 100644 azure-pipelines.yml diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml new file mode 100644 index 000000000..82ba25bc6 --- /dev/null +++ b/.github/workflows/ci.yml @@ -0,0 +1,230 @@ +name: Run all checks for pull requests + +on: + pull_request: + branches: + - main + workflow_dispatch: + inputs: + ref: + description: 'The git ref to build the package for' + required: false + default: '' + type: string + +# Precompute the ref if the workflow was triggered by a workflow dispatch rather than copying this logic repeatedly +env: + ref: ${{ github.event_name == 'workflow_dispatch' && inputs.ref || null }} + +jobs: + eval: + name: Evaluate changes + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v3 + name: Checkout repository + with: + ref: ${{ env.ref }} + fetch-depth: 2 + + # We want to enforce the following rules for PRs: + # * if all modifications are to README.md + # no testing is needed + # * if there are modifications to docs/* or to any code + # then docs need to be built to verify consistency + # * if there are modifications to notebooks/* or to any code + # then notebooks need to be run to verify consistency + # * for any code changes (or changes to metadata files) + # linting and testing should be run + # For a PR build, HEAD will be the merge commit, and we want to diff against the base branch, + # which will be the first parent: HEAD^ + # (For non-PR changes, we will always perform all CI tasks) + # Note that GitHub Actions provides path filters, but they operate at the workflow level, not the job level + - run: | + if ($env:GITHUB_EVENT_NAME -eq 'pull_request') { + $editedFiles = git diff HEAD^ --name-only + $editedFiles # echo edited files to enable easier debugging + $codeChanges = $false + $docChanges = $false + $nbChanges = $false + $changeType = "none" + foreach ($file in $editedFiles) { + switch -Wildcard ($file) { + "README.md" { Continue } + ".gitignore" { Continue } + "econml/_version.py" { Continue } + "prototypes/*" { Continue } + "images/*" { Continue } + "doc/*" { $docChanges = $true; Continue } + "notebooks/*" { $nbChanges = $true; Continue } + default { $codeChanges = $true; Continue } + } + } + } + echo "buildDocs=$(($env:GITHUB_EVENT_NAME -ne 'pull_request') -or ($docChanges -or $codeChanges))" >> $env:GITHUB_OUTPUT + echo "buildNbs=$(($env:GITHUB_EVENT_NAME -ne 'pull_request') -or ($nbChanges -or $codeChanges))" >> $env:GITHUB_OUTPUT + echo "testCode=$(($env:GITHUB_EVENT_NAME -ne 'pull_request') -or $codeChanges)" >> $env:GITHUB_OUTPUT + shell: pwsh + name: Determine type of code change + id: eval + outputs: + buildDocs: ${{ steps.eval.outputs.buildDocs }} + buildNbs: ${{ steps.eval.outputs.buildNbs }} + testCode: ${{ steps.eval.outputs.testCode }} + + lint: + name: Lint code + needs: [eval] + if: ${{ needs.eval.outputs.testCode == 'True' }} + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v3 + name: Checkout repository + with: + ref: ${{ env.ref }} + - uses: actions/setup-python@v4 + name: Setup Python + with: + python-version: 3.9 + - run: python -m pip install --upgrade pip && pip install --upgrade setuptools + name: Ensure latest pip and setuptools + - run: 'pip install pycodestyle && pycodestyle econml' + + notebooks: + name: Run notebooks + needs: [eval] + if: ${{ needs.eval.outputs.buildNbs == 'True' }} + runs-on: ubuntu-latest + strategy: + matrix: + kind: [except customer scenarios, customer scenarios] + include: + - kind: "except customer scenarios" + extras: "[tf,plt]" + pattern: "(?!CustomerScenarios)" + install_graphviz: true + version: 3.8 # no supported version of tensorflow for 3.9 + - kind: "customer scenarios" + extras: "[plt,dowhy]" + pattern: "CustomerScenarios" + version: 3.9 + install_graphviz: false + fail-fast: false + steps: + - uses: actions/checkout@v3 + name: Checkout repository + with: + ref: ${{ env.ref }} + - uses: actions/setup-python@v4 + name: Setup Python + with: + python-version: ${{ matrix.version }} + - run: python -m pip install --upgrade pip && pip install --upgrade setuptools + name: Ensure latest pip and setuptools + - run: sudo apt-get -yq install graphviz + name: Install graphviz + if: ${{ matrix.install_graphviz }} + - run: pip install -e .${{ matrix.extras }} + name: Install econml + - run: pip install pytest pytest-runner jupyter jupyter-client nbconvert nbformat seaborn xgboost tqdm + name: Install test and notebook requirements + - run: pip list + name: List installed packages + - run: python setup.py pytest + name: Run notebook tests + env: + PYTEST_ADDOPTS: '-m "notebook"' + NOTEBOOK_DIR_PATTERN: ${{ matrix.pattern }} + + tests: + name: "Run tests" + needs: [eval] + if: ${{ needs.eval.outputs.testCode == 'True' }} + strategy: + matrix: + os: [ubuntu-latest, windows-latest, macos-latest] + python-version: [3.6, 3.7, 3.8, 3.9] + kind: [serial, other, dml, main, treatment] + exclude: + # Serial tests fail randomly on mac sometimes, so we don't run them there + - os: macos-latest + kind: serial + # Python 3.6 isn't supported on ubuntu-latest + - os: ubuntu-latest + python-version: 3.6 + + # Assign the correct package and testing options for each kind of test + include: + - kind: serial + opts: '-m "serial" -n 1' + extras: "[tf,plt]" + - kind: other + opts: '-m "cate_api" -n auto' + extras: "[tf,plt]" + - kind: dml + opts: '-m "dml"' + extras: "[tf,plt]" + - kind: main + opts: '-m "not (notebook or automl or dml or serial or cate_api or treatment_featurization)" -n 2' + extras: "[tf,plt,dowhy]" + - kind: treatment + opts: '-m "treatment_featurization" -n auto' + extras: "[tf,plt]" + fail-fast: false + runs-on: ${{ matrix.os }} + steps: + - uses: actions/checkout@v3 + name: Checkout repository + with: + ref: ${{ env.ref }} + - uses: actions/setup-python@v4 + name: Setup Python + with: + python-version: ${{ matrix.python-version }} + - run: python -m pip install --upgrade pip && pip install --upgrade setuptools + name: Ensure latest pip and setuptools + - run: pip install -e .${{ matrix.extras }} + name: Install econml + - run: pip install pytest pytest-runner coverage + name: Install pytest + - run: python setup.py pytest + name: Run tests + env: + PYTEST_ADDOPTS: ${{ matrix.opts }} + COVERAGE_PROCESS_START: 'setup.cfg' + # todo: publish test results, coverage info + + build: + name: Build package + needs: [eval] + if: ${{ needs.eval.outputs.testCode == 'True' }} + uses: ./.github/workflows/publish-package.yml + with: + publish: false + repository: testpypi + # don't have access to env context here for some reason + ref: ${{ github.event_name == 'workflow_dispatch' && inputs.ref || null }} + + docs: + name: Build documentation + needs: [eval] + if: ${{ needs.eval.outputs.buildDocs == 'True' }} + uses: ./.github/workflows/publish-documentation.yml + with: + publish: false + environment: test + # don't have access to env context here for some reason + ref: ${{ github.event_name == 'workflow_dispatch' && inputs.ref || null }} + + verify: + name: Verify CI checks + needs: [lint, notebooks, tests, build, docs] + if: always() + runs-on: ubuntu-latest + steps: + - run: exit 1 + name: At least one check failed or was cancelled + if: ${{ !(success()) }} + - run: exit 0 + name: All checks passed + if: ${{ success() }} diff --git a/.github/workflows/publish-documentation.yml b/.github/workflows/publish-documentation.yml new file mode 100644 index 000000000..dc44f986a --- /dev/null +++ b/.github/workflows/publish-documentation.yml @@ -0,0 +1,80 @@ +name: Build and publish the documentation +on: + workflow_dispatch: + inputs: + publish: + description: 'Whether to publish the documentation (as opposed to just building it)' + required: false + default: true + type: boolean + environment: + description: 'Whether to publish to production or test environment' + required: false + default: prod + type: choice + options: [prod, test] + ref: + description: 'The git ref to build the documentation for' + required: false + default: '' + type: string + # annoyingly, there does not seem to be a way to share these input definitions between triggers + workflow_call: + inputs: + publish: + description: 'Whether to publish the documentation (as opposed to just building it)' + required: false + default: true + type: boolean + # choice type only supported for workflow_dispatch, not workflow_call + environment: + description: 'Whether to publish to production or test environment' + required: false + default: prod + type: string + ref: + description: 'The git ref to build the documentation for' + required: false + default: '' + type: string + + +jobs: + create_docs: + name: Create and publish documentation + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v3 + name: Checkout repository + with: + ref: ${{ inputs.ref }} + - uses: actions/setup-python@v4 + name: Setup Python + with: + python-version: 3.8 # because of our supported TensorFlow versions, must build on 3.6-3.8 + - run: python -m pip install --upgrade pip && pip install --upgrade setuptools + name: Ensure latest pip and setuptools + - run: pip install -U cython && pip install -e .[all] + name: Install econml[all] + - run: sudo apt-get -yq install graphviz + name: Install graphviz + - run: pip install "sphinx~=4.4.0" "sphinx_rtd_theme~=1.0.0" && python setup.py build_sphinx -W + name: Build documentation + - uses: actions/upload-artifact@v3 + name: Upload docs as artifact + with: + name: docs + path: build/sphinx/html/ + - run: |- + pushd build/sphinx/html + zip -r docs.zip * + popd + name: Zip docs for publishing + if : ${{ inputs.publish }} + - uses: azure/webapps-deploy@v2 + name: Deploy documentation to Azure web app + with: + app-name: ${{ inputs.environment == 'prod' && 'econml' || 'econml-dev' }} + package: build/sphinx/html/docs.zip + publish-profile: ${{ inputs.environment == 'prod' && secrets.PROD_WEBAPP_PUBLISH_PROFILE || secrets.STAGING_WEBAPP_PUBLISH_PROFILE }} + if: ${{ inputs.publish }} \ No newline at end of file diff --git a/.github/workflows/publish-package.yml b/.github/workflows/publish-package.yml new file mode 100644 index 000000000..6fde706a5 --- /dev/null +++ b/.github/workflows/publish-package.yml @@ -0,0 +1,117 @@ +name: Build and publish the package to PyPI + +on: + workflow_dispatch: + inputs: + publish: + description: 'Whether to publish the package (as opposed to just building it)' + required: false + default: true + type: boolean + repository: + description: 'Whether to publish to production PyPI or test PyPI' + required: false + default: pypi + type: choice + options: [pypi, testpypi] + ref: + description: 'The git ref to build the package for' + required: false + default: '' + type: string + # annoyingly, there does not seem to be a way to share these input definitions between triggers + workflow_call: + inputs: + publish: + description: 'Whether to publish the package (as opposed to just building it)' + required: false + default: true + type: boolean + # choice type only supported for workflow_dispatch, not workflow_call + repository: + description: 'Whether to publish to production PyPI or test PyPI' + required: false + default: pypi + type: string + ref: + description: 'The git ref to build the package for' + required: false + default: '' + type: string + +jobs: + build_wheels: + name: Build wheels on ${{ matrix.os }} + strategy: + matrix: + os: [ubuntu-latest, windows-latest, macos-latest] + runs-on: ${{ matrix.os }} + steps: + - uses: actions/checkout@v3 + name: Checkout repository + with: + ref: ${{ inputs.ref }} + - uses: actions/setup-python@v4 + name: Setup Python + with: + python-version: 3.9 + - run: python -m pip install --upgrade pip && pip install --upgrade setuptools + name: Ensure latest pip and setuptools + - run: pip install cibuildwheel && python -m cibuildwheel --output-dir dist + name: Build wheels + env: + CIBW_BUILD: cp3{7,8,9,10}-* + CIBW_SKIP: "*musl* *win32 *i686" + - uses: actions/upload-artifact@v3 + name: Upload wheels as artifact + with: + name: dist + path: dist/ + build_sdist: + name: Build sdist + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v3 + name: Checkout repository + with: + ref: ${{ inputs.ref }} + - uses: actions/setup-python@v4 + name: Setup Python + with: + python-version: 3.8 # because of our supported TensorFlow versions, must build on 3.6-3.8 + - run: python -m pip install --upgrade pip && pip install --upgrade setuptools + name: Ensure latest pip and setuptools + - run: pip install -U cython && pip install -e .[all] + name: Install econml[all] + - run: python setup.py sdist + name: Build sdist + - uses: actions/upload-artifact@v3 + name: Upload sdist as artifact + with: + name: dist + path: dist/ + publish: + name: Publish to PyPI or TestPyPI + needs: [build_wheels, build_sdist] + runs-on: ubuntu-latest + steps: + - uses: actions/setup-python@v4 + name: Setup Python + with: + python-version: 3.9 + - run: python -m pip install --upgrade pip && pip install --upgrade setuptools + name: Ensure latest pip and setuptools + - run: pip install twine + name: Install twine + - uses: actions/download-artifact@v3 + name: Download wheels and sdist + with: + name: dist + path: dist/ + - run: twine upload dist/* + name: Upload wheels and sdist to package index + env: + TWINE_USERNAME: __token__ + TWINE_REPOSITORY: ${{ inputs.repository }} + TWINE_PASSWORD: ${{ inputs.repository == 'pypi' && secrets.PYPI_UPLOAD_TOKEN || secrets.TEST_PYPI_UPLOAD_TOKEN }} + if: ${{ inputs.publish }} \ No newline at end of file diff --git a/azure-pipelines-steps.yml b/azure-pipelines-steps.yml deleted file mode 100644 index 12f88fa69..000000000 --- a/azure-pipelines-steps.yml +++ /dev/null @@ -1,65 +0,0 @@ -# Python package -# Create and test a Python package on multiple Python versions. -# Add steps that analyze code, save the dist with the build record, publish to a PyPI-compatible index, and more: -# https://docs.microsoft.com/azure/devops/pipelines/languages/python - -parameters: - package: '-e .' - images: ['ubuntu-20.04', 'macOS-12', 'windows-2019'] - versions: ['3.7', '3.8', '3.9', '3.10'] - job: - job: Job - -jobs: -- job: ${{ parameters.job.job }} - variables: - ${{ if ge(length(parameters.images), 2) }}: - imgPart: ", {0}" - ${{ if lt(length(parameters.images), 2) }}: - imgPart: "" - ${{ if ge(length(parameters.versions), 2) }}: - verPart: ", Python {1}" - ${{ if lt(length(parameters.versions), 2) }}: - verPart: "" - - strategy: - matrix: - ${{ each image in parameters.images }}: - ${{ each version in parameters.versions }}: - ${{ format(format('{0}{1} ', variables.imgPart, variables.verPart), image, version) }}: - imageName: ${{ image }} - python.version: ${{ version }} - - pool: - vmImage: $(imageName) - - ${{ each pair in parameters.job }}: # Insert all properties other than "strategy", "pool", "steps", "variables", "job" - ${{ if notIn(pair.key, 'strategy', 'pool', 'steps', 'variables', 'job') }}: - ${{ pair.key }}: ${{ pair.value }} - - steps: - - task: UsePythonVersion@0 - displayName: 'Use Python $(python.version)' - inputs: - versionSpec: '$(python.version)' - - # Enable long path support on Windows so that all packages can be installed correctly - - script: 'reg add HKLM\SYSTEM\CurrentControlSet\Control\FileSystem /v LongPathsEnabled /t REG_DWORD /d 1 /f' - displayName: 'Enable long paths on Windows' - condition: and(succeeded(), eq(variables['Agent.OS'], 'Windows_NT')) - - # Install graphviz programmatically on Linux - - script: 'sudo apt-get -yq install graphviz' - displayName: 'Install graphviz on Linux' - condition: and(succeeded(), eq(variables['Agent.OS'], 'Linux')) - - # Install OpenMP on Mac to support lightgbm - - script: 'brew install libomp' - displayName: 'Install OpenMP on Mac' - condition: and(succeeded(), eq(variables['Agent.OS'], 'Darwin')) - - # Install the package - - script: 'python -m pip install --upgrade pip && pip install --upgrade setuptools wheel Cython && pip install ${{ parameters.package }} && pip freeze --exclude-editable' - displayName: 'Install dependencies' - - - ${{ parameters.job.steps }} diff --git a/azure-pipelines.yml b/azure-pipelines.yml deleted file mode 100644 index 772c405d0..000000000 --- a/azure-pipelines.yml +++ /dev/null @@ -1,333 +0,0 @@ -# Python package -# Create and test a Python package on multiple Python versions. -# Add steps that analyze code, save the dist with the build record, publish to a PyPI-compatible index, and more: -# https://docs.microsoft.com/azure/devops/pipelines/languages/python - -trigger: -- main - -jobs: -- job: 'EvalChanges' - displayName: 'Analyze changed files to determine which job to run' - pool: - vmImage: 'macos-12' - steps: - # We want to enforce the following rules for PRs: - # * if all modifications are to README.md - # no testing is needed - # * if there are modifications to docs/* or to any code - # then docs need to be built to verify consistency - # * if there are modifications to notebooks/* or to any code - # then notebooks need to be run to verify consistency - # * for any code changes (or changes to metadata files) - # linting and testing should be run - # For a PR build, HEAD will be the merge commit, and we want to diff against the base branch, - # which will be the first parent: HEAD^ - # (For non-PR changes, we will always perform all CI tasks) - - powershell: | - if ($env:BUILD_REASON -eq 'PullRequest') { - $editedFiles = git diff HEAD^ --name-only - $editedFiles # echo edited files to enable easier debugging - $codeChanges = $false - $docChanges = $false - $nbChanges = $false - $changeType = "none" - foreach ($file in $editedFiles) { - switch -Wildcard ($file) { - "README.md" { Continue } - ".gitignore" { Continue } - "econml/_version.py" { Continue } - "prototypes/*" { Continue } - "images/*" { Continue } - "doc/*" { $docChanges = $true; Continue } - "notebooks/*" { $nbChanges = $true; Continue } - default { $codeChanges = $true; Continue } - } - } - } - Write-Host "##vso[task.setvariable variable=buildDocs;isOutput=true]$(($env:BUILD_REASON -ne 'PullRequest') -or ($docChanges -or $codeChanges))" - Write-Host "##vso[task.setvariable variable=buildNbs;isOutput=true]$(($env:BUILD_REASON -ne 'PullRequest') -or ($nbChanges -or $codeChanges))" - Write-Host "##vso[task.setvariable variable=testCode;isOutput=true]$(($env:BUILD_REASON -ne 'PullRequest') -or $codeChanges)" - name: output - displayName: 'Determine type of code change' - -- template: azure-pipelines-steps.yml - parameters: - versions: ['3.8'] - images: ['ubuntu-20.04'] - package: '-e .[all]' - job: - job: 'Docs' - displayName: 'Build documentation' - dependsOn: 'EvalChanges' - condition: eq(dependencies.EvalChanges.outputs['output.buildDocs'], 'True') - steps: - - script: 'sudo apt-get -yq install graphviz' - displayName: 'Install graphviz' - - - script: 'pip install sklearn-contrib-lightning' - displayName: 'Install lightning' - - - script: 'pip install git+https://github.com/slundberg/shap.git@d1d2700acc0259f211934373826d5ff71ad514de' - displayName: 'Install specific version of shap' - - - script: 'pip install sphinx!=5.1.0 sphinx_rtd_theme' - displayName: 'Install sphinx' - - - script: 'python setup.py build_sphinx -W' - displayName: 'Build documentation' - - - publish: 'build/sphinx/html' - condition: 'succeededOrFailed()' - artifact: 'Documentation' - displayName: 'Publish documentation as artifact' - - - script: 'python setup.py build_sphinx -b doctest' - displayName: 'Run doctests' - - -- template: azure-pipelines-steps.yml - parameters: - versions: ['3.8'] - images: ['ubuntu-20.04'] - package: '-e .[tf,plt,dowhy]' - job: - job: 'Notebooks_cust' - dependsOn: 'EvalChanges' - condition: eq(dependencies.EvalChanges.outputs['output.buildNbs'], 'True') - displayName: 'Notebooks (Customer Solutions)' - steps: - # Work around https://github.com/pypa/pip/issues/9542 - - script: 'pip install -U numpy~=1.21.0' - displayName: 'Upgrade numpy' - - - script: 'pip install pytest pytest-runner jupyter jupyter-client nbconvert nbformat seaborn xgboost tqdm py && pip list && python setup.py pytest' - displayName: 'Unit tests' - env: - PYTEST_ADDOPTS: '-m "notebook"' - NOTEBOOK_DIR_PATTERN: 'CustomerScenarios' - - - task: PublishTestResults@2 - displayName: 'Publish Test Results **/test-results.xml' - inputs: - testResultsFiles: '**/test-results.xml' - testRunTitle: 'Notebooks' - condition: succeededOrFailed() - -- template: azure-pipelines-steps.yml - parameters: - versions: ['3.8'] - images: ['ubuntu-20.04'] - package: '-e .[tf,plt]' - job: - job: 'Notebooks_noncust' - dependsOn: 'EvalChanges' - condition: eq(dependencies.EvalChanges.outputs['output.buildNbs'], 'True') - displayName: 'Notebooks (except Customer Solutions)' - steps: - # Work around https://github.com/pypa/pip/issues/9542 - - script: 'pip install -U numpy~=1.21.0' - displayName: 'Upgrade numpy' - - - script: 'pip install pytest pytest-runner jupyter jupyter-client nbconvert nbformat seaborn xgboost tqdm py && python setup.py pytest' - displayName: 'Unit tests' - env: - PYTEST_ADDOPTS: '-m "notebook"' - NOTEBOOK_DIR_PATTERN: '(?!CustomerScenarios)' - - - task: PublishTestResults@2 - displayName: 'Publish Test Results **/test-results.xml' - inputs: - testResultsFiles: '**/test-results.xml' - testRunTitle: 'Notebooks' - condition: succeededOrFailed() - - -# - job: 'AutoML' -# dependsOn: 'EvalChanges' -# condition: eq(dependencies.EvalChanges.outputs['output.testCode'], 'True') -# variables: -# python.version: '3.6' -# pool: -# vmImage: 'ubuntu-20.04' -# steps: -# - template: azure-pipelines-steps.yml -# parameters: -# body: -# - task: AzureCLI@2 -# displayName: 'AutoML tests' -# inputs: -# azureSubscription: 'automl' -# scriptLocation: 'inlineScript' -# scriptType: 'pscore' -# powerShellIgnoreLASTEXITCODE: '' # string for now due to https://github.com/microsoft/azure-pipelines-tasks/issues/12266 -# inlineScript: | -# $env:SUBSCRIPTION_ID = az account show --query id -o tsv -# python setup.py pytest -# env: -# WORKSPACE_NAME: 'testWorkspace' -# RESOURCE_GROUP: 'testingAutoMLEconML' -# PYTEST_ADDOPTS: '-m "automl" -n 0' -# COVERAGE_PROCESS_START: 'setup.cfg' - -# - task: PublishTestResults@2 -# displayName: 'Publish Test Results **/test-results.xml' -# inputs: -# testResultsFiles: '**/test-results.xml' -# testRunTitle: 'AutoML' -# condition: succeededOrFailed() -# package: '.[automl]' - -- template: azure-pipelines-steps.yml - parameters: - versions: ['3.8'] - images: ['macos-12'] - job: - job: 'Linting' - dependsOn: 'EvalChanges' - condition: eq(dependencies.EvalChanges.outputs['output.testCode'], 'True') - steps: - - script: 'pip install pycodestyle && pycodestyle econml' - failOnStderr: true - displayName: Linting - -- template: azure-pipelines-steps.yml - parameters: - package: '-e .[tf,plt,dowhy]' - job: - job: Tests_main - dependsOn: 'EvalChanges' - condition: eq(dependencies.EvalChanges.outputs['output.testCode'], 'True') - displayName: 'Run tests (main)' - steps: - - script: 'pip install pytest pytest-runner "coverage<6.4.1;python_version==''3.6''" "coverage;python_version>''3.6''" py && python setup.py pytest' - displayName: 'Unit tests' - env: - PYTEST_ADDOPTS: '-m "not (notebook or automl or dml or serial or cate_api or treatment_featurization)" -n 2' - COVERAGE_PROCESS_START: 'setup.cfg' - - task: PublishTestResults@2 - displayName: 'Publish Test Results **/test-results.xml' - inputs: - testResultsFiles: '**/test-results.xml' - testRunTitle: 'Python $(python.version), image $(imageName)' - condition: succeededOrFailed() - - - task: PublishCodeCoverageResults@1 - displayName: 'Publish Code Coverage Results' - inputs: - codeCoverageTool: Cobertura - summaryFileLocation: '$(System.DefaultWorkingDirectory)/**/coverage.xml' - -- template: azure-pipelines-steps.yml - parameters: - package: '-e .[tf,plt]' - job: - job: Tests_dml - dependsOn: 'EvalChanges' - condition: eq(dependencies.EvalChanges.outputs['output.testCode'], 'True') - displayName: 'Run tests (DML)' - steps: - - script: 'pip install pytest pytest-runner "coverage<6.4.1;python_version==''3.6''" "coverage;python_version>''3.6''" py && python setup.py pytest' - displayName: 'Unit tests' - env: - PYTEST_ADDOPTS: '-m "dml"' - COVERAGE_PROCESS_START: 'setup.cfg' - - task: PublishTestResults@2 - displayName: 'Publish Test Results **/test-results.xml' - inputs: - testResultsFiles: '**/test-results.xml' - testRunTitle: 'Python $(python.version), image $(imageName)' - condition: succeededOrFailed() - - - task: PublishCodeCoverageResults@1 - displayName: 'Publish Code Coverage Results' - inputs: - codeCoverageTool: Cobertura - summaryFileLocation: '$(System.DefaultWorkingDirectory)/**/coverage.xml' - -- template: azure-pipelines-steps.yml - parameters: - # exclude macOS since these tests frequently break there - images: ['ubuntu-20.04', 'windows-2019'] - package: '-e .[tf,plt]' - job: - job: Tests_serial - dependsOn: 'EvalChanges' - condition: eq(dependencies.EvalChanges.outputs['output.testCode'], 'True') - displayName: 'Run tests (Serial)' - steps: - - script: 'pip install pytest pytest-runner "coverage<6.4.1;python_version==''3.6''" "coverage;python_version>''3.6''" py && python setup.py pytest' - displayName: 'Unit tests' - env: - PYTEST_ADDOPTS: '-m "serial" -n 1' - COVERAGE_PROCESS_START: 'setup.cfg' - - task: PublishTestResults@2 - displayName: 'Publish Test Results **/test-results.xml' - inputs: - testResultsFiles: '**/test-results.xml' - testRunTitle: 'Python $(python.version), image $(imageName)' - condition: succeededOrFailed() - - - task: PublishCodeCoverageResults@1 - displayName: 'Publish Code Coverage Results' - inputs: - codeCoverageTool: Cobertura - summaryFileLocation: '$(System.DefaultWorkingDirectory)/**/coverage.xml' - -- template: azure-pipelines-steps.yml - parameters: - package: '-e .[tf,plt]' - job: - job: Tests_CATE_API - dependsOn: 'EvalChanges' - condition: eq(dependencies.EvalChanges.outputs['output.testCode'], 'True') - displayName: 'Run tests (Other)' - steps: - - script: 'pip install pytest pytest-runner "coverage<6.4.1;python_version==''3.6''" "coverage;python_version>''3.6''" py' - displayName: 'Install pytest' - - script: 'python setup.py pytest' - displayName: 'CATE Unit tests' - env: - PYTEST_ADDOPTS: '-m "cate_api" -n auto' - COVERAGE_PROCESS_START: 'setup.cfg' - - task: PublishTestResults@2 - displayName: 'Publish Test Results **/test-results.xml' - inputs: - testResultsFiles: '**/test-results.xml' - testRunTitle: 'Python $(python.version), image $(imageName)' - condition: succeededOrFailed() - - - task: PublishCodeCoverageResults@1 - displayName: 'Publish Code Coverage Results' - inputs: - codeCoverageTool: Cobertura - summaryFileLocation: '$(System.DefaultWorkingDirectory)/**/coverage.xml' - -- template: azure-pipelines-steps.yml - parameters: - package: '-e .[tf,plt]' - job: - job: Tests_treatment_featurization - dependsOn: 'EvalChanges' - condition: eq(dependencies.EvalChanges.outputs['output.testCode'], 'True') - displayName: 'Run tests (Treatment Featurization)' - steps: - - script: 'pip install pytest pytest-runner "coverage<6.4.1;python_version==''3.6''" "coverage;python_version>''3.6''" py' - displayName: 'Install pytest' - - script: 'python setup.py pytest' - displayName: 'Treatment Featurization Unit tests' - env: - PYTEST_ADDOPTS: '-m "treatment_featurization" -n auto' - COVERAGE_PROCESS_START: 'setup.cfg' - - task: PublishTestResults@2 - displayName: 'Publish Test Results **/test-results.xml' - inputs: - testResultsFiles: '**/test-results.xml' - testRunTitle: 'Python $(python.version), image $(imageName)' - condition: succeededOrFailed() - - - task: PublishCodeCoverageResults@1 - displayName: 'Publish Code Coverage Results' - inputs: - codeCoverageTool: Cobertura - summaryFileLocation: '$(System.DefaultWorkingDirectory)/**/coverage.xml' \ No newline at end of file diff --git a/setup.cfg b/setup.cfg index eb1d53122..62107f18e 100644 --- a/setup.cfg +++ b/setup.cfg @@ -44,8 +44,8 @@ install_requires = test_suite = econml.tests tests_require = pytest - pytest-xdist < 2.0.0 - pytest-cov < 3.0.0 + pytest-xdist + pytest-cov [options.extras_require] automl =