From 1e9d741a9b5b7c7e63a7cb75ae85c60d2d83ab2e Mon Sep 17 00:00:00 2001 From: AlexAndorra Date: Tue, 8 Jun 2021 11:50:04 +0200 Subject: [PATCH 1/4] Add dependencies to conda envs files --- conda-envs/environment-dev-py37.yml | 7 +++++++ conda-envs/environment-dev-py38.yml | 10 ++++++++++ conda-envs/environment-dev-py39.yml | 10 ++++++++++ 3 files changed, 27 insertions(+) diff --git a/conda-envs/environment-dev-py37.yml b/conda-envs/environment-dev-py37.yml index c944732928..ec86989991 100644 --- a/conda-envs/environment-dev-py37.yml +++ b/conda-envs/environment-dev-py37.yml @@ -3,6 +3,11 @@ channels: - conda-forge - defaults dependencies: +- aesara>=2.0.9 +- arviz>=0.11.2 +- cachetools>=4.2.1 +- dill +- fastprogress>=0.2.0 - h5py>=2.7 - ipython>=7.16 - libblas=*=*mkl @@ -11,6 +16,7 @@ dependencies: - numpy=1.15 - numpydoc>=0.9 - pandas=0.24 +- patsy - pre-commit>=2.8.0 - pytest-cov>=2.5 - pytest>=3.0 @@ -20,4 +26,5 @@ dependencies: - scipy=1.2 - sphinx-autobuild>=0.7 - sphinx>=1.5 +- typing-extensions - watermark diff --git a/conda-envs/environment-dev-py38.yml b/conda-envs/environment-dev-py38.yml index 24e9040cb3..4530a9d64e 100644 --- a/conda-envs/environment-dev-py38.yml +++ b/conda-envs/environment-dev-py38.yml @@ -3,18 +3,28 @@ channels: - conda-forge - defaults dependencies: +- aesara>=2.0.9 +- arviz>=0.11.2 +- cachetools>=4.2.1 +- dill +- fastprogress>=0.2.0 - h5py>=2.7 - ipython>=7.16 - libblas=*=*mkl - mkl-service - nbsphinx>=0.4 +- numpy>=1.15.0 - numpydoc>=0.9 +- pandas +- patsy - pre-commit>=2.8.0 - pytest-cov>=2.5 - pytest>=3.0 - python-graphviz - python=3.8 - recommonmark>=0.4 +- scipy>=1.2.0 - sphinx-autobuild>=0.7 - sphinx>=1.5 +- typing-extensions>=3.7.4 - watermark diff --git a/conda-envs/environment-dev-py39.yml b/conda-envs/environment-dev-py39.yml index 6f6db58e67..b54b52901e 100644 --- a/conda-envs/environment-dev-py39.yml +++ b/conda-envs/environment-dev-py39.yml @@ -3,18 +3,28 @@ channels: - conda-forge - defaults dependencies: +- aesara>=2.0.9 +- arviz>=0.11.2 +- cachetools>=4.2.1 +- dill +- fastprogress>=0.2.0 - h5py>=2.7 - ipython>=7.16 - libblas=*=*mkl - mkl-service - nbsphinx>=0.4 +- numpy>=1.15.0 - numpydoc>=0.9 +- pandas>=0.24.0 +- patsy>=0.5.1 - pre-commit>=2.8.0 - pytest-cov>=2.5 - pytest>=3.0 - python-graphviz - python=3.9 - recommonmark>=0.4 +- scipy>=1.2.0 - sphinx-autobuild>=0.7 - sphinx>=1.5 +- typing-extensions>=3.7.4 - watermark From fa3148d2cb139df34a5482d2d96917f5b50d668e Mon Sep 17 00:00:00 2001 From: AlexAndorra Date: Wed, 9 Jun 2021 10:44:20 +0200 Subject: [PATCH 2/4] Remove patsy dependency --- conda-envs/environment-dev-py37.yml | 1 - conda-envs/environment-dev-py38.yml | 1 - conda-envs/environment-dev-py39.yml | 1 - 3 files changed, 3 deletions(-) diff --git a/conda-envs/environment-dev-py37.yml b/conda-envs/environment-dev-py37.yml index ec86989991..27088c746d 100644 --- a/conda-envs/environment-dev-py37.yml +++ b/conda-envs/environment-dev-py37.yml @@ -16,7 +16,6 @@ dependencies: - numpy=1.15 - numpydoc>=0.9 - pandas=0.24 -- patsy - pre-commit>=2.8.0 - pytest-cov>=2.5 - pytest>=3.0 diff --git a/conda-envs/environment-dev-py38.yml b/conda-envs/environment-dev-py38.yml index 4530a9d64e..dcc7787529 100644 --- a/conda-envs/environment-dev-py38.yml +++ b/conda-envs/environment-dev-py38.yml @@ -16,7 +16,6 @@ dependencies: - numpy>=1.15.0 - numpydoc>=0.9 - pandas -- patsy - pre-commit>=2.8.0 - pytest-cov>=2.5 - pytest>=3.0 diff --git a/conda-envs/environment-dev-py39.yml b/conda-envs/environment-dev-py39.yml index b54b52901e..dfd7c17eb2 100644 --- a/conda-envs/environment-dev-py39.yml +++ b/conda-envs/environment-dev-py39.yml @@ -16,7 +16,6 @@ dependencies: - numpy>=1.15.0 - numpydoc>=0.9 - pandas>=0.24.0 -- patsy>=0.5.1 - pre-commit>=2.8.0 - pytest-cov>=2.5 - pytest>=3.0 From 5c61f28a42f1e8a43341c369e43c19e3a8c0800d Mon Sep 17 00:00:00 2001 From: AlexAndorra Date: Thu, 10 Jun 2021 16:22:10 +0200 Subject: [PATCH 3/4] Pin scipy>1.4.1 --- conda-envs/environment-dev-py37.yml | 2 +- conda-envs/environment-dev-py38.yml | 2 +- conda-envs/environment-dev-py39.yml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/conda-envs/environment-dev-py37.yml b/conda-envs/environment-dev-py37.yml index 27088c746d..fa55737def 100644 --- a/conda-envs/environment-dev-py37.yml +++ b/conda-envs/environment-dev-py37.yml @@ -22,7 +22,7 @@ dependencies: - python-graphviz - python=3.7 - recommonmark>=0.4 -- scipy=1.2 +- scipy>1.4.1 - sphinx-autobuild>=0.7 - sphinx>=1.5 - typing-extensions diff --git a/conda-envs/environment-dev-py38.yml b/conda-envs/environment-dev-py38.yml index dcc7787529..238aa81683 100644 --- a/conda-envs/environment-dev-py38.yml +++ b/conda-envs/environment-dev-py38.yml @@ -22,7 +22,7 @@ dependencies: - python-graphviz - python=3.8 - recommonmark>=0.4 -- scipy>=1.2.0 +- scipy>1.4.1 - sphinx-autobuild>=0.7 - sphinx>=1.5 - typing-extensions>=3.7.4 diff --git a/conda-envs/environment-dev-py39.yml b/conda-envs/environment-dev-py39.yml index dfd7c17eb2..faf3ce09b0 100644 --- a/conda-envs/environment-dev-py39.yml +++ b/conda-envs/environment-dev-py39.yml @@ -22,7 +22,7 @@ dependencies: - python-graphviz - python=3.9 - recommonmark>=0.4 -- scipy>=1.2.0 +- scipy>1.4.1 - sphinx-autobuild>=0.7 - sphinx>=1.5 - typing-extensions>=3.7.4 From c4dc52a2107413276d6acf07c00b9fbcb5d3e8bd Mon Sep 17 00:00:00 2001 From: AlexAndorra Date: Tue, 15 Jun 2021 19:28:55 +0200 Subject: [PATCH 4/4] pre-commit change of requirements-dev.txt --- requirements-dev.txt | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/requirements-dev.txt b/requirements-dev.txt index ec92f04f0d..73745a800f 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -1,14 +1,23 @@ # This file is auto-generated by scripts/generate_pip_deps_from_conda.py, do not modify. # See that file for comments about the need/usage of each dependency. +aesara>=2.0.9 +arviz>=0.11.2 +cachetools>=4.2.1 +dill +fastprogress>=0.2.0 h5py>=2.7 ipython>=7.16 nbsphinx>=0.4 +numpy>=1.15.0 numpydoc>=0.9 +pandas>=0.24.0 pre-commit>=2.8.0 pytest-cov>=2.5 pytest>=3.0 recommonmark>=0.4 +scipy>1.4.1 sphinx-autobuild>=0.7 sphinx>=1.5 +typing-extensions>=3.7.4 watermark