From 470081b32ca94117d6cded12237709dc3491ddc7 Mon Sep 17 00:00:00 2001
From: Liz Gehret <elizabeth.gehret@gmail.com>
Date: Tue, 25 Jun 2024 13:39:39 -0700
Subject: [PATCH] IMP: install instructions use direct URL for env file

---
 source/install/native.rst | 60 ++++++++-------------------------------
 1 file changed, 12 insertions(+), 48 deletions(-)

diff --git a/source/install/native.rst b/source/install/native.rst
index cc393ad..37969f9 100644
--- a/source/install/native.rst
+++ b/source/install/native.rst
@@ -70,32 +70,20 @@ QIIME 2 Amplicon Distribution
             </p>
          </div>
          <div id="amplicon-macOS-intel" class="tab-pane fade">
-            <pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py39-osx-conda.yml
-   conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py39-osx-conda.yml</pre>
-   <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-amplicon-2024.5-py39-osx-conda.yml</pre>
+            <pre>conda env create -n qiime2-amplicon-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/amplicon/released/qiime2-amplicon-macos-latest-conda.yml</pre>
          </div>
          <div id="amplicon-macOS-apple-silicon" class="tab-pane fade">
             <p>These instructions are for users with <a href="https://support.apple.com/en-us/HT211814">Apple Silicon</a> chips (M1, M2, etc), and configures the installation of QIIME 2 in <a href="https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment">Rosetta 2 emulation mode</a>.</p>
-            <pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py39-osx-conda.yml
-   CONDA_SUBDIR=osx-64 conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py39-osx-conda.yml
+            <pre>CONDA_SUBDIR=osx-64 conda env create -n qiime2-amplicon-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/amplicon/released/qiime2-amplicon-macos-latest-conda.yml
    conda activate qiime2-amplicon-2024.5
    conda config --env --set subdir osx-64</pre>
-   <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-amplicon-2024.5-py39-osx-conda.yml</pre>
          </div>
          <div id="amplicon-linux" class="tab-pane fade">
-            <pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py39-linux-conda.yml
-   conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py39-linux-conda.yml</pre>
-   <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-amplicon-2024.5-py39-linux-conda.yml</pre>
+            <pre>conda env create -n qiime2-amplicon-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/amplicon/released/qiime2-amplicon-ubuntu-latest-conda.yml</pre>
          </div>
          <div id="amplicon-wsl" class="tab-pane fade">
             <p>These instructions are identical to the Linux instructions and are intended for users of the <a href="https://learn.microsoft.com/en-us/windows/wsl/about">Windows Subsystem for Linux</a>.</p>
-            <pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py39-linux-conda.yml
-   conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py39-linux-conda.yml</pre>
-   <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-amplicon-2024.5-py39-linux-conda.yml</pre>
+            <pre>conda env create -n qiime2-amplicon-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/amplicon/released/qiime2-amplicon-ubuntu-latest-conda.yml</pre>
          </div>
       </div>
    </div>
@@ -120,32 +108,20 @@ QIIME 2 Metagenome Distribution
             </p>
          </div>
          <div id="metagenome-macOS-intel" class="tab-pane fade">
-            <pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py39-osx-conda.yml
-   conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py39-osx-conda.yml</pre>
-   <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-metagenome-2024.5-py39-osx-conda.yml</pre>
+            <pre>conda env create -n qiime2-metagenome-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/metagenome/released/qiime2-metagenome-macos-latest-conda.yml</pre>
          </div>
          <div id="metagenome-macOS-apple-silicon" class="tab-pane fade">
             <p>These instructions are for users with <a href="https://support.apple.com/en-us/HT211814">Apple Silicon</a> chips (M1, M2, etc), and configures the installation of QIIME 2 in <a href="https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment">Rosetta 2 emulation mode</a>.</p>
-            <pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py39-osx-conda.yml
-   CONDA_SUBDIR=osx-64 conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py39-osx-conda.yml
+            <pre>CONDA_SUBDIR=osx-64 conda env create -n qiime2-metagenome-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/metagenome/released/qiime2-metagenome-macos-latest-conda.yml
    conda activate qiime2-metagenome-2024.5
    conda config --env --set subdir osx-64</pre>
-   <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-metagenome-2024.5-py39-osx-conda.yml</pre>
          </div>
          <div id="metagenome-linux" class="tab-pane fade">
-            <pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py39-linux-conda.yml
-   conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py39-linux-conda.yml</pre>
-   <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-metagenome-2024.5-py39-linux-conda.yml</pre>
+            <pre>conda env create -n qiime2-metagenome-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/metagenome/released/qiime2-metagenome-ubuntu-latest-conda.yml</pre>
          </div>
          <div id="metagenome-wsl" class="tab-pane fade">
             <p>These instructions are identical to the Linux instructions and are intended for users of the <a href="https://learn.microsoft.com/en-us/windows/wsl/about">Windows Subsystem for Linux</a>.</p>
-            <pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py39-linux-conda.yml
-   conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py39-linux-conda.yml</pre>
-   <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-metagenome-2024.5-py39-linux-conda.yml</pre>
+            <pre>conda env create -n qiime2-metagenome-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/metagenome/released/qiime2-metagenome-ubuntu-latest-conda.yml</pre>
          </div>
       </div>
    </div>
@@ -170,32 +146,20 @@ QIIME 2 Tiny Distribution
             </p>
          </div>
          <div id="tiny-macOS-intel" class="tab-pane fade">
-            <pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py39-osx-conda.yml
-   conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py39-osx-conda.yml</pre>
-   <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-tiny-2024.5-py39-osx-conda.yml</pre>
+            <pre>conda env create -n qiime2-tiny-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/tiny/released/qiime2-tiny-macos-latest-conda.yml</pre>
          </div>
          <div id="tiny-macOS-apple-silicon" class="tab-pane fade">
             <p>These instructions are for users with <a href="https://support.apple.com/en-us/HT211814">Apple Silicon</a> chips (M1, M2, etc), and configures the installation of QIIME 2 in <a href="https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment">Rosetta 2 emulation mode</a>.</p>
-            <pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py39-osx-conda.yml
-   CONDA_SUBDIR=osx-64 conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py39-osx-conda.yml
+            <pre>CONDA_SUBDIR=osx-64 conda env create -n qiime2-tiny-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/tiny/released/qiime2-tiny-macos-latest-conda.yml
    conda activate qiime2-tiny-2024.5
    conda config --env --set subdir osx-64</pre>
-   <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-tiny-2024.5-py39-osx-conda.yml</pre>
          </div>
          <div id="tiny-linux" class="tab-pane fade">
-            <pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py39-linux-conda.yml
-   conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py39-linux-conda.yml</pre>
-   <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-tiny-2024.5-py39-linux-conda.yml</pre>
+            <pre>conda env create -n qiime2-tiny-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/tiny/released/qiime2-tiny-ubuntu-latest-conda.yml</pre>
          </div>
          <div id="tiny-wsl" class="tab-pane fade">
             <p>These instructions are identical to the Linux instructions and are intended for users of the <a href="https://learn.microsoft.com/en-us/windows/wsl/about">Windows Subsystem for Linux</a>.</p>
-            <pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py39-linux-conda.yml
-   conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py39-linux-conda.yml</pre>
-   <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-tiny-2024.5-py39-linux-conda.yml</pre>
+            <pre>conda env create -n qiime2-tiny-2024.5 --file https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/tiny/released/qiime2-tiny-ubuntu-latest-conda.yml</pre>
          </div>
       </div>
    </div>