diff --git a/qiita_db/metadata_template/test/test_util.py b/qiita_db/metadata_template/test/test_util.py index 268d761ca..3de8d6fd9 100644 --- a/qiita_db/metadata_template/test/test_util.py +++ b/qiita_db/metadata_template/test/test_util.py @@ -265,6 +265,15 @@ def test_load_template_to_dataframe_with_nulls(self): exp.index.name = 'sample_name' assert_frame_equal(obs, exp, check_like=True) + def test_load_template_to_dataframe_better_tokenizing_error_msg(self): + with self.assertRaisesRegex(RuntimeError, 'Your file has more columns ' + 'with values than headers'): + qdb.metadata_template.util.load_template_to_dataframe( + StringIO('sample_name\tcollection_timestamp\n' + '2.Sample1\t2014-05-29 12:24:51\t\n' + '2.Sample2\taaa\n' + 'xxx\tadfa\t\t\n')) + def test_get_invalid_sample_names(self): all_valid = ['2.sample.1', 'foo.bar.baz', 'roses', 'are', 'red', 'v10l3t5', '4r3', '81u3'] diff --git a/qiita_db/metadata_template/util.py b/qiita_db/metadata_template/util.py index 96a7f4dd4..431dc7098 100644 --- a/qiita_db/metadata_template/util.py +++ b/qiita_db/metadata_template/util.py @@ -88,6 +88,10 @@ def load_template_to_dataframe(fn, index='sample_name'): the database Everything in the DataFrame will be read and managed as string + + While reading the file via pandas, it's possible that it will raise a + 'tokenizing' pd.errors.ParserError which is confusing for users; thus, + rewriting the error with an explanation of what it means and how to fix. """ # Load in file lines holdfile = None @@ -144,16 +148,26 @@ def load_template_to_dataframe(fn, index='sample_name'): # comment: # using the tab character as "comment" we remove rows that are # constituted only by delimiters i. e. empty rows. - template = pd.read_csv( - StringIO(''.join(holdfile)), - sep='\t', - dtype=str, - encoding='utf-8', - infer_datetime_format=False, - keep_default_na=False, - index_col=False, - comment='\t', - converters={index: lambda x: str(x).strip()}) + try: + template = pd.read_csv( + StringIO(''.join(holdfile)), + sep='\t', + dtype=str, + encoding='utf-8', + infer_datetime_format=False, + keep_default_na=False, + index_col=False, + comment='\t', + converters={index: lambda x: str(x).strip()}) + except pd.errors.ParserError as e: + if 'tokenizing' in str(e): + msg = ('Your file has more columns with values than headers. To ' + 'fix, make sure to delete any extra rows or columns; they ' + 'might look empty because they have spaces. Then upload ' + 'and try again.') + raise RuntimeError(msg) + else: + raise e # remove newlines and tabs from fields template.replace(to_replace='[\t\n\r\x0b\x0c]+', value='', regex=True, inplace=True) diff --git a/qiita_db/support_files/qiita-db.dbs b/qiita_db/support_files/qiita-db.dbs index 375afc175..599e03679 100644 --- a/qiita_db/support_files/qiita-db.dbs +++ b/qiita_db/support_files/qiita-db.dbs @@ -939,10 +939,10 @@ - + - + @@ -1686,90 +1686,90 @@ Controlled Vocabulary]]> - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -1895,4 +1895,4 @@ ALTER TABLE oauth_software ADD CONSTRAINT fk_oauth_software FOREIGN KEY ( client ]]> - + \ No newline at end of file diff --git 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qiita

- + + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 1 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -232,2324 +262,2258 @@ - - - + + + - - - + + + - - - + + + - - - + + + - - - + + + - - - + + + - - + - - qiita - (c) DbSchema - Hover columns to read comments. + + qiita-db + (c) DbSchema + Hover columns to read the comments. - -Group_analyses - + +Group_analyses + - -Group_users - + +Group_users + - + Group_study - + - -Group_vocabularies - + +Group_vocabularies + - -Group_ontology - + +Group_ontology + - -Group_logging - + +Group_logging + - -Group_filepaths - + +Group_filepaths + - -Group_messages - + +Group_messages + - -Group_artifact - + +Group_artifact + - + Group_template - + - -Group_processing - + +Group_processing + - -Group_publication - + +Group_publication + - -Group_oauth2 - + +Group_oauth2 + - -Group_archive - + +Group_archive + - -Group_stats - - - - - Fk fk_analysis_user -analysis ref qiita_user ( email ) - -Fk fk_analysis_user -analysis ref qiita_user ( email ) -email - - - Fk fk_analysis -analysis ref portal_type ( portal_type_id ) - -Fk fk_analysis -analysis ref portal_type ( portal_type_id ) -portal_type_id + +Group_stats + + - + Fk fk_analysis_logging analysis ref logging ( logging_id ) -Fk fk_analysis_logging +Fk fk_analysis_logging analysis ref logging ( logging_id ) -logging_id +logging_id - + Fk fk_analysis_filepath analysis_filepath ref analysis ( analysis_id ) -Fk fk_analysis_filepath +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 368,912L 336,912' ><title>Fk fk_analysis_filepath analysis_filepath ref analysis ( analysis_id ) -analysis_id +analysis_id - + Fk fk_analysis_filepath_0 analysis_filepath ref filepath ( filepath_id ) -Fk fk_analysis_filepath_0 +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 512,864L 624,864' ><title>Fk fk_analysis_filepath_0 analysis_filepath ref filepath ( filepath_id ) -filepath_id +filepath_id - + Fk fk_analysis_filepath_1 analysis_filepath ref data_type ( data_type_id ) -Fk fk_analysis_filepath_1 +<path transform='translate(8,0)' marker-start='url(#foot0p)' marker-end='url(#arrow1)' class='dotted ' d='M 512,928L 536,928Q 544,928 544,936L 544,1112Q 544,1120 552,1120L 688,1120' ><title>Fk fk_analysis_filepath_1 analysis_filepath ref data_type ( data_type_id ) -data_type_id +data_type_id - + Fk fk_analysis_portal analysis_portal ref analysis ( analysis_id ) -Fk fk_analysis_portal +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 240,816L 240,880' ><title>Fk fk_analysis_portal analysis_portal ref analysis ( analysis_id ) -analysis_id +analysis_id - + Fk fk_analysis_portal_0 analysis_portal ref portal_type ( portal_type_id ) -Fk fk_analysis_portal_0 +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 352,720L 352,632Q 352,624 360,624L 752,624' ><title>Fk fk_analysis_portal_0 analysis_portal ref portal_type ( portal_type_id ) -portal_type_id +portal_type_id - + Fk fk_analysis_sample_analysis analysis_sample ref analysis ( analysis_id ) -Fk fk_analysis_sample_analysis +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 352,976L 336,976' ><title>Fk fk_analysis_sample_analysis analysis_sample ref analysis ( analysis_id ) -analysis_id +analysis_id - + Fk fk_analysis_sample analysis_sample ref study_sample ( sample_id ) -Fk fk_analysis_sample +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 496,992L 520,992Q 528,992 528,984L 528,680Q 528,672 536,672L 1448,672Q 1456,672 1456,664L 1456,400' ><title>Fk fk_analysis_sample analysis_sample ref study_sample ( sample_id ) -sample_id +sample_id - + Fk fk_analysis_sample_artifact analysis_sample ref artifact ( artifact_id ) -Fk fk_analysis_sample_artifact +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 480,1072L 480,1080Q 480,1088 488,1088L 1000,1088Q 1008,1088 1008,1096L 1008,1176Q 1008,1184 1016,1184L 1224,1184Q 1232,1184 1232,1176L 1232,1072' ><title>Fk fk_analysis_sample_artifact analysis_sample ref artifact ( artifact_id ) -artifact_id +artifact_id - + Fk fk_analysis_users_analysis analysis_users ref analysis ( analysis_id ) -Fk fk_analysis_users_analysis +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 176,880L 176,896' ><title>Fk fk_analysis_users_analysis analysis_users ref analysis ( analysis_id ) -analysis_id +analysis_id - + Fk fk_analysis_users_user analysis_users ref qiita_user ( email ) -Fk fk_analysis_users_user +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 176,784L 176,472Q 176,464 184,464L 688,464' ><title>Fk fk_analysis_users_user analysis_users ref qiita_user ( email ) -email +email - + Fk fk_archive_feature_value archive_feature_value ref archive_merging_scheme ( archive_merging_scheme_id ) -Fk fk_archive_feature_value +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1488,1456L 1488,1448Q 1488,1440 1480,1440L 1464,1440Q 1456,1440 1456,1448L 1456,1456' ><title>Fk fk_archive_feature_value archive_feature_value ref archive_merging_scheme ( archive_merging_scheme_id ) -archive_merging_scheme_id +archive_merging_scheme_id - + Fk fk_artifact_visibility artifact ref visibility ( visibility_id ) -Fk fk_artifact_visibility +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1216,1072L 1216,1088' ><title>Fk fk_artifact_visibility artifact ref visibility ( visibility_id ) -visibility_id +visibility_id - + Fk fk_artifact_filetype artifact ref artifact_type ( artifact_type_id ) -Fk fk_artifact_filetype +<path transform='translate(8,0)' marker-start='url(#foot0p)' marker-end='url(#arrow1)' class='dotted ' d='M 1392,1040L 1416,1040Q 1424,1040 1424,1032L 1424,1024' ><title>Fk fk_artifact_filetype artifact ref artifact_type ( artifact_type_id ) -artifact_type_id +artifact_type_id - + Fk fk_artifact_data_type artifact ref data_type ( data_type_id ) -Fk fk_artifact_data_type +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1248,1072L 1248,1208Q 1248,1216 1240,1216L 824,1216Q 816,1216 816,1208L 816,1200' ><title>Fk fk_artifact_data_type artifact ref data_type ( data_type_id ) -data_type_id +data_type_id - + Fk fk_artifact_filepath_artifact artifact_filepath ref artifact ( artifact_id ) -Fk fk_artifact_filepath_artifact +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1168,976L 1184,976' ><title>Fk fk_artifact_filepath_artifact artifact_filepath ref artifact ( artifact_id ) -artifact_id +artifact_id - + Fk fk_artifact_filepath_filepath artifact_filepath ref filepath ( filepath_id ) -Fk fk_artifact_filepath_filepath +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1024,960L 952,960Q 944,960 944,952L 944,904Q 944,896 936,896L 832,896' ><title>Fk fk_artifact_filepath_filepath artifact_filepath ref filepath ( filepath_id ) -filepath_id +filepath_id - + Fk fk_artifact_output_processing_job artifact_output_processing_job ref artifact ( artifact_id ) -Fk fk_artifact_output_processing_job +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1744,1408L 1288,1408Q 1280,1408 1280,1400L 1280,1072' ><title>Fk fk_artifact_output_processing_job artifact_output_processing_job ref artifact ( artifact_id ) -artifact_id +artifact_id - + Fk fk_artifact_output_processing_job_0 artifact_output_processing_job ref processing_job ( processing_job_id ) -Fk fk_artifact_output_processing_job_0 +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1936,1360L 1936,1272Q 1936,1264 1944,1264L 1952,1264' ><title>Fk fk_artifact_output_processing_job_0 artifact_output_processing_job ref processing_job ( processing_job_id ) -processing_job_id +processing_job_id - + Fk fk_artifact_output_processing_job_1 artifact_output_processing_job ref command_output ( command_output_id ) -Fk fk_artifact_output_processing_job_1 +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1920,1360L 1920,1256Q 1920,1248 1912,1248L 1904,1248' ><title>Fk fk_artifact_output_processing_job_1 artifact_output_processing_job ref command_output ( command_output_id ) -command_output_id +command_output_id - + Fk fk_artifact_processing_job artifact_processing_job ref artifact ( artifact_id ) -Fk fk_artifact_processing_job +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1712,1280L 1672,1280Q 1664,1280 1664,1272L 1664,1064Q 1664,1056 1656,1056L 1392,1056' ><title>Fk fk_artifact_processing_job artifact_processing_job ref artifact ( artifact_id ) -artifact_id +artifact_id - + Fk fk_artifact_processing_job_0 artifact_processing_job ref processing_job ( processing_job_id ) -Fk fk_artifact_processing_job_0 +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1904,1312L 1976,1312Q 1984,1312 1984,1304L 1984,1296' ><title>Fk fk_artifact_processing_job_0 artifact_processing_job ref processing_job ( processing_job_id ) -processing_job_id +processing_job_id - + Fk fk_artifact_type_filepath_type artifact_type_filepath_type ref artifact_type ( artifact_type_id ) -Fk fk_artifact_type_filepath_type +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1424,832L 1424,864' ><title>Fk fk_artifact_type_filepath_type artifact_type_filepath_type ref artifact_type ( artifact_type_id ) -artifact_type_id +artifact_type_id - + Fk fk_artifact_type_filepath_type_0 artifact_type_filepath_type ref filepath_type ( filepath_type_id ) -Fk fk_artifact_type_filepath_type_0 +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1360,736L 960,736' ><title>Fk fk_artifact_type_filepath_type_0 artifact_type_filepath_type ref filepath_type ( filepath_type_id ) -filepath_type_id +filepath_type_id - + Fk fk_column_controlled_vocabularies column_controlled_vocabularies ref mixs_field_description ( column_name ) -Fk fk_column_controlled_vocabularies +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 448,1248L 448,1272Q 448,1280 440,1280L 432,1280' ><title>Fk fk_column_controlled_vocabularies column_controlled_vocabularies ref mixs_field_description ( column_name ) -column_name +column_name - + Fk fk_column_controlled_vocab2 column_controlled_vocabularies ref controlled_vocab ( controlled_vocab_id ) -Fk fk_column_controlled_vocab2 +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 256,1184L 224,1184' ><title>Fk fk_column_controlled_vocab2 column_controlled_vocabularies ref controlled_vocab ( controlled_vocab_id ) -controlled_vocab_id +controlled_vocab_id - + Fk fk_column_ontology column_ontology ref mixs_field_description ( column_name ) -Fk fk_column_ontology +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 432,1408L 432,1392' ><title>Fk fk_column_ontology column_ontology ref mixs_field_description ( column_name ) -column_name +column_name - + Fk fk_command_output_0 command_output ref artifact_type ( artifact_type_id ) -Fk fk_command_output_0 +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1712,1136L 1624,1136Q 1616,1136 1616,1128L 1616,1024' ><title>Fk fk_command_output_0 command_output ref artifact_type ( artifact_type_id ) -artifact_type_id +artifact_type_id - + Fk fk_command_parameter command_parameter ref software_command ( command_id ) -Fk fk_command_parameter +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 2208,1136L 2208,1168' ><title>Fk fk_command_parameter command_parameter ref software_command ( command_id ) -command_id +command_id - + Fk fk_controlled_vocab_values controlled_vocab_values ref controlled_vocab ( controlled_vocab_id ) -Fk fk_controlled_vocab_values +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 64,1280L 64,1248' ><title>Fk fk_controlled_vocab_values controlled_vocab_values ref controlled_vocab ( controlled_vocab_id ) -controlled_vocab_id +controlled_vocab_id - + Fk fk_default_parameter_set default_parameter_set ref software_command ( command_id ) -Fk fk_default_parameter_set +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 2400,1168L 2384,1168' ><title>Fk fk_default_parameter_set default_parameter_set ref software_command ( command_id ) -command_id +command_id - + Fk fk_default_workflow_software default_workflow ref software ( software_id ) -Fk fk_default_workflow_software +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 2640,1040L 2608,1040' ><title>Fk fk_default_workflow_software default_workflow ref software ( software_id ) -software_id - - - Fk fk_default_workflow_command -default_workflow_node ref software_command ( command_id ) - -Fk fk_default_workflow_command -default_workflow_node ref software_command ( command_id ) -command_id +software_id - + Fk fk_ebi_run_accession ebi_run_accession ref study_sample ( sample_id ) -Fk fk_ebi_run_accession +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1488,1088L 1488,1048Q 1488,1040 1496,1040L 1640,1040Q 1648,1040 1648,1032L 1648,856Q 1648,848 1640,848L 1352,848Q 1344,848 1344,840L 1344,696Q 1344,688 1352,688L 1464,688Q 1472,688 1472,680L 1472,400' ><title>Fk fk_ebi_run_accession ebi_run_accession ref study_sample ( sample_id ) -sample_id +sample_id - + Fk fk_ebi_run_accession_artifact ebi_run_accession ref artifact ( artifact_id ) -Fk fk_ebi_run_accession_artifact +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1360,1088L 1360,1072' ><title>Fk fk_ebi_run_accession_artifact ebi_run_accession ref artifact ( artifact_id ) -artifact_id +artifact_id - + Fk fk_filepath filepath ref filepath_type ( filepath_type_id ) -Fk fk_filepath +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 784,736L 784,728Q 784,720 792,720L 800,720' ><title>Fk fk_filepath filepath ref filepath_type ( filepath_type_id ) -filepath_type_id +filepath_type_id - + Fk fk_filepath_0 filepath ref checksum_algorithm ( checksum_algorithm_id ) -Fk fk_filepath_0 +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 752,912L 752,944' ><title>Fk fk_filepath_0 filepath ref checksum_algorithm ( checksum_algorithm_id ) -checksum_algorithm_id +checksum_algorithm_id - + Fk fk_filepath_data_directory filepath ref data_directory ( data_directory_id ) -Fk fk_filepath_data_directory +<path transform='translate(8,0)' marker-start='url(#foot0p)' marker-end='url(#arrow1)' class='dotted ' d='M 624,880L 616,880Q 608,880 608,888L 608,912' ><title>Fk fk_filepath_data_directory filepath ref data_directory ( data_directory_id ) -data_directory_id +data_directory_id - + Fk fk_investigation_study_person investigation ref study_person ( contact_person_id -> study_person_id ) -Fk fk_investigation_study_person +<path transform='translate(8,0)' marker-start='url(#foot0p)' marker-end='url(#arrow1)' class='dotted ' d='M 2160,272L 2144,272' ><title>Fk fk_investigation_study_person investigation ref study_person ( contact_person_id -> study_person_id ) -contact_person_id - - - Fk fk_investigation_study -investigation_study ref investigation ( investigation_id ) - -Fk fk_investigation_study -investigation_study ref investigation ( investigation_id ) -investigation_id - - - Fk fk_investigation_study_study -investigation_study ref study ( study_id ) - -Fk fk_investigation_study_study -investigation_study ref study ( study_id ) -study_id +contact_person_id - + Fk fk_logging_severity logging ref severity ( severity_id ) -Fk fk_logging_severity +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1104,1392L 1128,1392Q 1136,1392 1136,1384L 1136,1376' ><title>Fk fk_logging_severity logging ref severity ( severity_id ) -severity_id +severity_id - + Fk fk_message_user message_user ref message ( message_id ) -Fk fk_message_user +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1424,1280L 1488,1280' ><title>Fk fk_message_user message_user ref message ( message_id ) -message_id +message_id - + Fk fk_message_user_0 message_user ref qiita_user ( email ) -Fk fk_message_user_0 +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1296,1264L 984,1264Q 976,1264 976,1256L 976,488Q 976,480 968,480L 896,480' ><title>Fk fk_message_user_0 message_user ref qiita_user ( email ) -email +email - + Fk fk_oauth_software_software oauth_software ref software ( software_id ) -Fk fk_oauth_software_software +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 2304,768L 2304,888Q 2304,896 2312,896L 2416,896' ><title>Fk fk_oauth_software_software oauth_software ref software ( software_id ) -software_id +software_id - + Fk fk_oauth_software oauth_software ref oauth_identifiers ( client_id ) -Fk fk_oauth_software +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 2320,704L 2336,704' ><title>Fk fk_oauth_software oauth_software ref oauth_identifiers ( client_id ) -client_id +client_id - + Fk fk_parameter_artifact_type parameter_artifact_type ref command_parameter ( command_parameter_id ) -Fk fk_parameter_artifact_type +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1712,1040L 1704,1040Q 1696,1040 1696,1032L 1696,904Q 1696,896 1704,896L 2200,896Q 2208,896 2208,904L 2208,944' ><title>Fk fk_parameter_artifact_type parameter_artifact_type ref command_parameter ( command_parameter_id ) -command_parameter_id +command_parameter_id - + Fk fk_parameter_artifact_type_0 parameter_artifact_type ref artifact_type ( artifact_type_id ) -Fk fk_parameter_artifact_type_0 +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1712,1056L 1688,1056Q 1680,1056 1680,1048L 1680,1016Q 1680,1008 1672,1008L 1632,1008' ><title>Fk fk_parameter_artifact_type_0 parameter_artifact_type ref artifact_type ( artifact_type_id ) -artifact_type_id +artifact_type_id - + Fk fk_parent_artifact_artifact parent_artifact ref artifact ( artifact_id ) -Fk fk_parent_artifact_artifact +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1152,880L 1184,880' ><title>Fk fk_parent_artifact_artifact parent_artifact ref artifact ( artifact_id ) -artifact_id +artifact_id - + Fk fk_parent_artifact_parent parent_artifact ref artifact ( parent_id -> artifact_id ) -Fk fk_parent_artifact_parent +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1152,896L 1184,896' ><title>Fk fk_parent_artifact_parent parent_artifact ref artifact ( parent_id -> artifact_id ) -parent_id +parent_id - + Fk fk_parent_processing_job parent_processing_job ref processing_job ( parent_id -> processing_job_id ) -Fk fk_parent_processing_job +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 2032,1376L 2032,1296' ><title>Fk fk_parent_processing_job parent_processing_job ref processing_job ( parent_id -> processing_job_id ) -parent_id +parent_id - + Fk fk_parent_processing_job_0 parent_processing_job ref processing_job ( child_id -> processing_job_id ) -Fk fk_parent_processing_job_0 +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 2048,1376L 2048,1296' ><title>Fk fk_parent_processing_job_0 parent_processing_job ref processing_job ( child_id -> processing_job_id ) -child_id +child_id - + Fk fk_per_study_tags_study per_study_tags ref study ( study_id ) -Fk fk_per_study_tags_study +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 2208,608L 2208,616Q 2208,624 2200,624L 1976,624Q 1968,624 1968,616L 1968,608' ><title>Fk fk_per_study_tags_study per_study_tags ref study ( study_id ) -study_id +study_id - + Fk fk_per_study_tags_study_tags per_study_tags ref study_tags ( study_tag_id ) -Fk fk_per_study_tags_study_tags +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 2304,512L 2304,496' ><title>Fk fk_per_study_tags_study_tags per_study_tags ref study_tags ( study_tag_id ) -study_tag_id +study_tag_id - + Fk fk_prep_template_artifact prep_template ref artifact ( artifact_id ) -Fk fk_prep_template_artifact +<path transform='translate(8,0)' marker-start='url(#foot0p)' marker-end='url(#arrow1)' class='dotted ' d='M 1248,656L 1248,864' ><title>Fk fk_prep_template_artifact prep_template ref artifact ( artifact_id ) -artifact_id +artifact_id - + Fk fk_filepath_id prep_template_filepath ref filepath ( filepath_id ) -Fk fk_filepath_id +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1040,496L 1040,520Q 1040,528 1032,528L 744,528Q 736,528 736,536L 736,736' ><title>Fk fk_filepath_id prep_template_filepath ref filepath ( filepath_id ) -filepath_id +filepath_id - + Fk fk_prep_template_id prep_template_filepath ref prep_template ( prep_template_id ) -Fk fk_prep_template_id +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1200,464L 1216,464' ><title>Fk fk_prep_template_id prep_template_filepath ref prep_template ( prep_template_id ) -prep_template_id +prep_template_id - + Fk fk_prep_template_processing_job prep_template_processing_job ref prep_template ( prep_template_id ) -Fk fk_prep_template_processing_job +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1744,912L 1744,536Q 1744,528 1736,528L 1440,528' ><title>Fk fk_prep_template_processing_job prep_template_processing_job ref prep_template ( prep_template_id ) -prep_template_id +prep_template_id + + + Fk fk_prep_template_processing_job_0 +prep_template_processing_job ref processing_job ( processing_job_id ) + +Fk fk_prep_template_processing_job_0 +prep_template_processing_job ref processing_job ( processing_job_id ) +processing_job_id - + Fk fk_prep_template prep_template_sample ref prep_template ( prep_template_id ) -Fk fk_prep_template +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1248,400L 1248,448' ><title>Fk fk_prep_template prep_template_sample ref prep_template ( prep_template_id ) prep_template_id + + + Fk fk_processing_job_qiita_user +processing_job ref qiita_user ( email ) + +Fk fk_processing_job_qiita_user +processing_job ref qiita_user ( email ) +email - + Fk fk_processing_job processing_job ref software_command ( command_id ) -Fk fk_processing_job +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 2160,1296L 2160,1304Q 2160,1312 2168,1312L 2176,1312' ><title>Fk fk_processing_job processing_job ref software_command ( command_id ) -command_id - - - Fk fk_processing_job_workflow -processing_job_workflow ref qiita_user ( email ) - -Fk fk_processing_job_workflow -processing_job_workflow ref qiita_user ( email ) -email +command_id - + Fk fk_processing_job_workflow_roots processing_job_workflow_root ref processing_job_workflow ( processing_job_workflow_id ) -Fk fk_processing_job_workflow_roots +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 2432,1520L 2416,1520' ><title>Fk fk_processing_job_workflow_roots processing_job_workflow_root ref processing_job_workflow ( processing_job_workflow_id ) -processing_job_workflow_id +processing_job_workflow_id - + Fk fk_user_user_level qiita_user ref user_level ( user_level_id ) -Fk fk_user_user_level +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 688,368L 672,368' ><title>Fk fk_user_user_level qiita_user ref user_level ( user_level_id ) -user_level_id +user_level_id - + Fk fk_reference_sequence_filepath reference ref filepath ( sequence_filepath -> filepath_id ) -Fk fk_reference_sequence_filepath +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 2000,1616L 952,1616Q 944,1616 944,1608L 944,984Q 944,976 952,976L 952,976Q 960,976 960,968L 960,888Q 960,880 952,880L 832,880' ><title>Fk fk_reference_sequence_filepath reference ref filepath ( sequence_filepath -> filepath_id ) -sequence_filepath +sequence_filepath - + Fk fk_reference_taxonomy_filepath reference ref filepath ( taxonomy_filepath -> filepath_id ) -Fk fk_reference_taxonomy_filepath +<path transform='translate(8,0)' marker-start='url(#foot0p)' marker-end='url(#arrow1)' class='dotted ' d='M 2032,1648L 2032,1656Q 2032,1664 2024,1664L 936,1664Q 928,1664 928,1656L 928,1064Q 928,1056 936,1056L 984,1056Q 992,1056 992,1048L 992,872Q 992,864 984,864L 832,864' ><title>Fk fk_reference_taxonomy_filepath reference ref filepath ( taxonomy_filepath -> filepath_id ) -taxonomy_filepath +taxonomy_filepath - + Fk fk_reference_tree_filepath reference ref filepath ( tree_filepath -> filepath_id ) -Fk fk_reference_tree_filepath +<path transform='translate(8,0)' marker-start='url(#foot0p)' marker-end='url(#arrow1)' class='dotted ' d='M 2048,1648L 2048,1672Q 2048,1680 2040,1680L 920,1680Q 912,1680 912,1672L 912,1080Q 912,1072 920,1072L 1000,1072Q 1008,1072 1008,1064L 1008,856Q 1008,848 1000,848L 832,848' ><title>Fk fk_reference_tree_filepath reference ref filepath ( tree_filepath -> filepath_id ) -tree_filepath +tree_filepath - + Fk fk_study_id sample_template_filepath ref study ( study_id ) -Fk fk_study_id +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 992,560L 968,560Q 960,560 960,552L 960,264Q 960,256 968,256L 1760,256' ><title>Fk fk_study_id sample_template_filepath ref study ( study_id ) -study_id +study_id - + Fk fk_filepath_id sample_template_filepath ref filepath ( filepath_id ) -Fk fk_filepath_id +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1024,640L 1024,792Q 1024,800 1016,800L 832,800' ><title>Fk fk_filepath_id sample_template_filepath ref filepath ( filepath_id ) -filepath_id +filepath_id - + Fk fk_software_software_type software ref software_type ( software_type_id ) -Fk fk_software_software_type +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 2608,912L 2624,912' ><title>Fk fk_software_software_type software ref software_type ( software_type_id ) -software_type_id +software_type_id - + Fk fk_software_artifact_type software_artifact_type ref artifact_type ( artifact_type_id ) -Fk fk_software_artifact_type +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1968,944L 1960,944Q 1952,944 1952,936L 1952,888Q 1952,880 1944,880L 1672,880Q 1664,880 1664,888L 1664,888Q 1664,896 1656,896L 1632,896' ><title>Fk fk_software_artifact_type software_artifact_type ref artifact_type ( artifact_type_id ) -artifact_type_id +artifact_type_id - + Fk fk_software_artifact_type_sw software_artifact_type ref software ( software_id ) -Fk fk_software_artifact_type_sw +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 2128,928L 2128,920Q 2128,912 2136,912L 2416,912' ><title>Fk fk_software_artifact_type_sw software_artifact_type ref software ( software_id ) -software_id +software_id - + Fk fk_software_publication software_publication ref software ( software_id ) -Fk fk_software_publication +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 2080,848L 2440,848Q 2448,848 2448,856L 2448,880' ><title>Fk fk_software_publication software_publication ref software ( software_id ) -software_id +software_id - + Fk fk_software_publication_0 software_publication ref publication ( publication_doi -> doi ) -Fk fk_software_publication_0 +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 2048,768L 2048,752' ><title>Fk fk_software_publication_0 software_publication ref publication ( publication_doi -> doi ) -publication_doi +publication_doi - + Fk fk_study_user study ref qiita_user ( email ) -Fk fk_study_user +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1760,208L 856,208Q 848,208 848,216L 848,272' ><title>Fk fk_study_user study ref qiita_user ( email ) -email - - - Fk fk_study_study_lab_person -study ref study_person ( lab_person_id -> study_person_id ) - -Fk fk_study_study_lab_person -study ref study_person ( lab_person_id -> study_person_id ) -lab_person_id - - - Fk fk_study_study_pi_person -study ref study_person ( principal_investigator_id -> study_person_id ) - -Fk fk_study_study_pi_person -study ref study_person ( principal_investigator_id -> study_person_id ) -principal_investigator_id +email - + Fk fk_study_timeseries_type study ref timeseries_type ( timeseries_type_id ) -Fk fk_study_timeseries_type +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1952,608L 1952,648Q 1952,656 1960,656L 2008,656Q 2016,656 2016,648L 2016,592' ><title>Fk fk_study_timeseries_type study ref timeseries_type ( timeseries_type_id ) -timeseries_type_id +timeseries_type_id - + Fk fk_study_artifact_study study_artifact ref study ( study_id ) -Fk fk_study_artifact_study +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1696,704L 1696,664Q 1696,656 1704,656L 1784,656Q 1792,656 1792,648L 1792,608' ><title>Fk fk_study_artifact_study study_artifact ref study ( study_id ) -study_id +study_id - + Fk fk_study_artifact_artifact study_artifact ref artifact ( artifact_id ) -Fk fk_study_artifact_artifact +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1616,704L 1616,696Q 1616,688 1608,688L 1496,688Q 1488,688 1488,696L 1488,696Q 1488,704 1480,704L 1336,704Q 1328,704 1328,712L 1328,864' ><title>Fk fk_study_artifact_artifact study_artifact ref artifact ( artifact_id ) -artifact_id +artifact_id - + Fk fk_study_environmental_package study_environmental_package ref study ( study_id ) -Fk fk_study_environmental_package +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 2160,128L 2088,128Q 2080,128 2080,136L 2080,168Q 2080,176 2072,176L 1976,176Q 1968,176 1968,184L 1968,192' ><title>Fk fk_study_environmental_package study_environmental_package ref study ( study_id ) -study_id +study_id - + Fk fk_study_environmental_package_0 study_environmental_package ref environmental_package ( environmental_package_name ) -Fk fk_study_environmental_package_0 +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 2416,144L 2424,144Q 2432,144 2432,152L 2432,184Q 2432,192 2424,192L 2416,192' ><title>Fk fk_study_environmental_package_0 study_environmental_package ref environmental_package ( environmental_package_name ) -environmental_package_name +environmental_package_name - + Fk fk_study_portal study_portal ref study ( study_id ) -Fk fk_study_portal +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1936,160L 1936,192' ><title>Fk fk_study_portal study_portal ref study ( study_id ) -study_id +study_id - + Fk fk_study_portal_0 study_portal ref portal_type ( portal_type_id ) -Fk fk_study_portal_0 +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1904,80L 1896,80Q 1888,80 1888,72L 1888,72Q 1888,64 1880,64L 920,64Q 912,64 912,72L 912,544' ><title>Fk fk_study_portal_0 study_portal ref portal_type ( portal_type_id ) -portal_type_id +portal_type_id - + Fk fk_study_prep_template_study study_prep_template ref study ( study_id ) -Fk fk_study_prep_template_study +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1696,576L 1760,576' ><title>Fk fk_study_prep_template_study study_prep_template ref study ( study_id ) -study_id +study_id - + Fk fk_study_prep_template_pt study_prep_template ref prep_template ( prep_template_id ) -Fk fk_study_prep_template_pt +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1520,560L 1440,560' ><title>Fk fk_study_prep_template_pt study_prep_template ref prep_template ( prep_template_id ) -prep_template_id +prep_template_id - + Fk fk_study_publication_study study_publication ref study ( study_id ) -Fk fk_study_publication_study +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1808,672L 1808,608' ><title>Fk fk_study_publication_study study_publication ref study ( study_id ) -study_id +study_id - + Fk fk_required_sample_info_study study_sample ref study ( study_id ) -Fk fk_required_sample_info_study +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1552,272L 1552,248Q 1552,240 1560,240L 1760,240' ><title>Fk fk_required_sample_info_study study_sample ref study ( study_id ) -study_id - - - Fk fk_study_tags_qiita_user -study_tags ref qiita_user ( email ) - -Fk fk_study_tags_qiita_user -study_tags ref qiita_user ( email ) -email +study_id - + Fk fk_study_users_study study_users ref study ( study_id ) -Fk fk_study_users_study +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1792,176L 1792,192' ><title>Fk fk_study_users_study study_users ref study ( study_id ) -study_id +study_id - + Fk fk_study_users_user study_users ref qiita_user ( email ) -Fk fk_study_users_user +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 1760,144L 888,144Q 880,144 880,152L 880,272' ><title>Fk fk_study_users_user study_users ref qiita_user ( email ) -email +email - + Fk fk_term_ontology term ref ontology ( ontology_id ) -Fk fk_term_ontology +<path transform='translate(8,0)' marker-start='url(#foot1p)' marker-end='url(#arrow1)' d='M 720,1424L 704,1424' ><title>Fk fk_term_ontology term ref ontology ( ontology_id ) -ontology_id +ontology_id - - - -analysisTable qiita.analysis +<rect class='entity' style='stroke:none;' x='192' y='888' width='144' height='192' rx='8' ry='8' /> +<path d='M 192 916 L 192 896 Q 192 888 200 888 L 328 888 Q 336 888 336 896 L 336 916 L192 916 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='192' y='888' width='144' height='192' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.analysis'><text x='235' y='907' >analysis</text><title>Table qiita.analysis Holds analysis information - Pk pk_analysis ( analysis_id ) analysis_idanalysis_id + <use id='nn' x='194' y='925' xlink:href='#nn'/><use id='pk' x='194' y='924' xlink:href='#pk'><title>Pk pk_analysis ( analysis_id ) analysis_idanalysis_id * bigserial Unique identifier for analysis -Referred by analysis_artifact ( analysis_id ) -Referred by analysis_filepath ( analysis_id ) -Referred by analysis_portal ( analysis_id ) -Referred by analysis_processing_job ( analysis_id ) -Referred by analysis_sample ( analysis_id ) +<a xlink:href='#qiita.analysis.analysis_id'><use id='ref' x='324' y='924' xlink:href='#ref'/><title>Referred by analysis_artifact ( analysis_id ) +Referred by analysis_filepath ( analysis_id ) +Referred by analysis_portal ( analysis_id ) +Referred by analysis_processing_job ( analysis_id ) +Referred by analysis_sample ( analysis_id ) Referred by analysis_users ( analysis_id ) - idx_analysis_email ( email ) emailemail + <use id='nn' x='194' y='941' xlink:href='#nn'/><use id='idx' x='194' y='940' xlink:href='#idx'><title>idx_analysis_email ( email ) emailemail * varchar Email for user who owns the analysis -References qiita_user ( email ) - namename +<a xlink:href='#qiita.analysis.email'><use id='fk' x='324' y='940' xlink:href='#fk'/><title>References qiita_user ( email ) + namename * varchar Name of the analysis -t descriptiondescription +<text x='333' y='964' text-anchor='end' class='colType'>t</text> <use id='nn' x='194' y='973' xlink:href='#nn'/><a xlink:href='#qiita.analysis_description'><text id='qiita.analysis.description' x='211' y='983'>description</text><title>description * varchar -t pmidpmid +<text x='333' y='980' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.analysis_pmid'><text id='qiita.analysis.pmid' x='211' y='999'>pmid</text><title>pmid varchar PMID of paper from the analysis -t timestamptimestamp +<text x='333' y='996' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.analysis_timestamp'><text id='qiita.analysis.timestamp' x='211' y='1015'>timestamp</text><title>timestamp timestamptz default current_timestamp -d dfltdflt +<text x='333' y='1012' text-anchor='end' class='colType'>d</text> <use id='nn' x='194' y='1021' xlink:href='#nn'/><a xlink:href='#qiita.analysis_dflt'><text id='qiita.analysis.dflt' x='211' y='1031'>dflt</text><title>dflt * boolean default false -b idx_analysis ( portal_type_id ) portal_type_idportal_type_id +<text x='333' y='1028' text-anchor='end' class='colType'>b</text> <use id='nn' x='194' y='1037' xlink:href='#nn'/><use id='idx' x='194' y='1036' xlink:href='#idx'><title>idx_analysis ( portal_type_id ) portal_type_idportal_type_id * bigint -References portal_type ( portal_type_id ) - idx_analysis_0 ( logging_id ) logging_idlogging_id +<a xlink:href='#qiita.analysis.portal_type_id'><use id='fk' x='324' y='1036' xlink:href='#fk'/><title>References portal_type ( portal_type_id ) + idx_analysis_0 ( logging_id ) logging_idlogging_id bigint -References logging ( logging_id ) +References logging ( logging_id ) - - - -analysis_filepathTable qiita.analysis_filepath +<rect class='entity' style='stroke:none;' x='384' y='840' width='128' height='96' rx='8' ry='8' /> +<path d='M 384 868 L 384 848 Q 384 840 392 840 L 504 840 Q 512 840 512 848 L 512 868 L384 868 ' style='fill:url(#tbg_C0D4F3);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='384' y='840' width='128' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.analysis_filepath'><text x='391' y='859' >analysis_filepath</text><title>Table qiita.analysis_filepath Stores link between analysis and the data file used for the analysis. - idx_analysis_filepath ( analysis_id ) Pk idx_analysis_filepath_1 ( analysis_id, filepath_id ) analysis_idanalysis_id + <use id='nn' x='386' y='877' xlink:href='#nn'/><use id='pk' x='386' y='876' xlink:href='#pk'><title>idx_analysis_filepath ( analysis_id ) Pk idx_analysis_filepath_1 ( analysis_id, filepath_id ) analysis_idanalysis_id * bigint -References analysis ( analysis_id ) - idx_analysis_filepath_0 ( filepath_id ) Pk idx_analysis_filepath_1 ( analysis_id, filepath_id ) filepath_idfilepath_id +<a xlink:href='#qiita.analysis_filepath.analysis_id'><use id='fk' x='500' y='876' xlink:href='#fk'/><title>References analysis ( analysis_id ) + idx_analysis_filepath_0 ( filepath_id ) Pk idx_analysis_filepath_1 ( analysis_id, filepath_id ) filepath_idfilepath_id * bigint -References filepath ( filepath_id ) - idx_analysis_filepath_2 ( data_type_id ) data_type_iddata_type_id +<a xlink:href='#qiita.analysis_filepath.filepath_id'><use id='fk' x='500' y='892' xlink:href='#fk'/><title>References filepath ( filepath_id ) + idx_analysis_filepath_2 ( data_type_id ) data_type_iddata_type_id bigint -References data_type ( data_type_id ) +References data_type ( data_type_id ) - - - -analysis_portalTable qiita.analysis_portal +<rect class='entity' style='stroke:none;' x='224' y='728' width='144' height='80' rx='8' ry='8' /> +<path d='M 224 756 L 224 736 Q 224 728 232 728 L 360 728 Q 368 728 368 736 L 368 756 L224 756 ' style='fill:url(#tbg_A8C4EF);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='224' y='728' width='144' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.analysis_portal'><text x='245' y='747' >analysis_portal</text><title>Table qiita.analysis_portal Controls what analyses are visible on what portals - idx_analysis_portal ( analysis_id ) analysis_idanalysis_id + <use id='nn' x='226' y='765' xlink:href='#nn'/><use id='idx' x='226' y='764' xlink:href='#idx'><title>idx_analysis_portal ( analysis_id ) analysis_idanalysis_id * bigint -References analysis ( analysis_id ) - idx_analysis_portal_0 ( portal_type_id ) portal_type_idportal_type_id +<a xlink:href='#qiita.analysis_portal.analysis_id'><use id='fk' x='356' y='764' xlink:href='#fk'/><title>References analysis ( analysis_id ) + idx_analysis_portal_0 ( portal_type_id ) portal_type_idportal_type_id * bigint -References portal_type ( portal_type_id ) +References portal_type ( portal_type_id ) - - - -analysis_sampleTable qiita.analysis_sample - idx_analysis_sample ( analysis_id ) Pk pk_analysis_sample ( analysis_id, artifact_id, sample_id ) analysis_idanalysis_id +<rect class='entity' style='stroke:none;' x='368' y='968' width='128' height='96' rx='8' ry='8' /> +<path d='M 368 996 L 368 976 Q 368 968 376 968 L 488 968 Q 496 968 496 976 L 496 996 L368 996 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='368' y='968' width='128' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.analysis_sample'><text x='378' y='987' >analysis_sample</text><title>Table qiita.analysis_sample + idx_analysis_sample ( analysis_id ) Pk pk_analysis_sample ( analysis_id, artifact_id, sample_id ) analysis_idanalysis_id * bigint -References analysis ( analysis_id ) - idx_analysis_sample_0 ( artifact_id ) Pk pk_analysis_sample ( analysis_id, artifact_id, sample_id ) artifact_idartifact_id +<a xlink:href='#qiita.analysis_sample.analysis_id'><use id='fk' x='484' y='1004' xlink:href='#fk'/><title>References analysis ( analysis_id ) + idx_analysis_sample_0 ( artifact_id ) Pk pk_analysis_sample ( analysis_id, artifact_id, sample_id ) artifact_idartifact_id * bigint -References artifact ( artifact_id ) - idx_analysis_sample_1 ( sample_id ) Pk pk_analysis_sample ( analysis_id, artifact_id, sample_id ) sample_idsample_id +<a xlink:href='#qiita.analysis_sample.artifact_id'><use id='fk' x='484' y='1020' xlink:href='#fk'/><title>References artifact ( artifact_id ) + idx_analysis_sample_1 ( sample_id ) Pk pk_analysis_sample ( analysis_id, artifact_id, sample_id ) sample_idsample_id * varchar -References study_sample ( sample_id ) +References study_sample ( sample_id ) - - - -analysis_usersTable qiita.analysis_users +<rect class='entity' style='stroke:none;' x='80' y='792' width='112' height='80' rx='8' ry='8' /> +<path d='M 80 820 L 80 800 Q 80 792 88 792 L 184 792 Q 192 792 192 800 L 192 820 L80 820 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='80' y='792' width='112' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.analysis_users'><text x='88' y='811' >analysis_users</text><title>Table qiita.analysis_users Links analyses to the users they are shared with - Pk idx_analysis_users ( analysis_id, email ) idx_analysis_users_analysis ( analysis_id ) analysis_idanalysis_id + <use id='nn' x='82' y='829' xlink:href='#nn'/><use id='pk' x='82' y='828' xlink:href='#pk'><title>Pk idx_analysis_users ( analysis_id, email ) idx_analysis_users_analysis ( analysis_id ) analysis_idanalysis_id * bigint -References analysis ( analysis_id ) - Pk idx_analysis_users ( analysis_id, email ) idx_analysis_users_email ( email ) emailemail +<a xlink:href='#qiita.analysis_users.analysis_id'><use id='fk' x='180' y='828' xlink:href='#fk'/><title>References analysis ( analysis_id ) + Pk idx_analysis_users ( analysis_id, email ) idx_analysis_users_email ( email ) emailemail * varchar -References qiita_user ( email ) +References qiita_user ( email ) - - - -archive_feature_valueTable qiita.archive_feature_value - Pk idx_archive_feature_value ( archive_merging_scheme_id, archive_feature ) idx_archive_feature_value_0 ( archive_merging_scheme_id ) archive_merging_scheme_idarchive_merging_scheme_id +<rect class='entity' style='stroke:none;' x='1472' y='1464' width='224' height='96' rx='8' ry='8' /> +<path d='M 1472 1492 L 1472 1472 Q 1472 1464 1480 1464 L 1688 1464 Q 1696 1464 1696 1472 L 1696 1492 L1472 1492 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1472' y='1464' width='224' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.archive_feature_value'><text x='1509' y='1483' >archive_feature_value</text><title>Table qiita.archive_feature_value + Pk idx_archive_feature_value ( archive_merging_scheme_id, archive_feature ) idx_archive_feature_value_0 ( archive_merging_scheme_id ) archive_merging_scheme_idarchive_merging_scheme_id * bigint -References archive_merging_scheme ( archive_merging_scheme_id ) - Pk idx_archive_feature_value ( archive_merging_scheme_id, archive_feature ) archive_featurearchive_feature +<a xlink:href='#qiita.archive_feature_value.archive_merging_scheme_id'><use id='fk' x='1684' y='1500' xlink:href='#fk'/><title>References archive_merging_scheme ( archive_merging_scheme_id ) + Pk idx_archive_feature_value ( archive_merging_scheme_id, archive_feature ) archive_featurearchive_feature * varchar -t archive_feature_valuearchive_feature_value +<text x='1693' y='1524' text-anchor='end' class='colType'>t</text> <use id='nn' x='1474' y='1533' xlink:href='#nn'/><a xlink:href='#qiita.archive_feature_value_archive_feature_value'><text id='qiita.archive_feature_value.archive_feature_value' x='1491' y='1543'>archive_feature_value</text><title>archive_feature_value * varchar -t +t - - - -archive_merging_schemeTable qiita.archive_merging_scheme - Pk pk_merging_scheme ( archive_merging_scheme_id ) archive_merging_scheme_idarchive_merging_scheme_id +<rect class='entity' style='stroke:none;' x='1248' y='1464' width='224' height='80' rx='8' ry='8' /> +<path d='M 1248 1492 L 1248 1472 Q 1248 1464 1256 1464 L 1464 1464 Q 1472 1464 1472 1472 L 1472 1492 L1248 1492 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1248' y='1464' width='224' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.archive_merging_scheme'><text x='1276' y='1483' >archive_merging_scheme</text><title>Table qiita.archive_merging_scheme + Pk pk_merging_scheme ( archive_merging_scheme_id ) archive_merging_scheme_idarchive_merging_scheme_id * bigserial -Referred by archive_feature_value ( archive_merging_scheme_id ) - archive_merging_schemearchive_merging_scheme +<a xlink:href='#qiita.archive_merging_scheme.archive_merging_scheme_id'><use id='ref' x='1460' y='1500' xlink:href='#ref'/><title>Referred by archive_feature_value ( archive_merging_scheme_id ) + archive_merging_schemearchive_merging_scheme * varchar -t +t - - - -artifactTable qiita.artifact +<rect class='entity' style='stroke:none;' x='1200' y='872' width='192' height='192' rx='8' ry='8' /> +<path d='M 1200 900 L 1200 880 Q 1200 872 1208 872 L 1384 872 Q 1392 872 1392 880 L 1392 900 L1200 900 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1200' y='872' width='192' height='192' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.artifact'><text x='1268' y='891' >artifact</text><title>Table qiita.artifact Represents data in the system - Pk pk_artifact ( artifact_id ) artifact_idartifact_id + <use id='nn' x='1202' y='909' xlink:href='#nn'/><use id='pk' x='1202' y='908' xlink:href='#pk'><title>Pk pk_artifact ( artifact_id ) artifact_idartifact_id * bigserial -Referred by analysis_artifact ( artifact_id ) -Referred by analysis_sample ( artifact_id ) -Referred by artifact_filepath ( artifact_id ) -Referred by artifact_output_processing_job ( artifact_id ) -Referred by artifact_processing_job ( artifact_id ) -Referred by ebi_run_accession ( artifact_id ) -Referred by parent_artifact ( artifact_id ) -Referred by parent_artifact ( parent_id -> artifact_id ) -Referred by prep_template ( artifact_id ) +<a xlink:href='#qiita.artifact.artifact_id'><use id='ref' x='1380' y='908' xlink:href='#ref'/><title>Referred by analysis_artifact ( artifact_id ) +Referred by analysis_sample ( artifact_id ) +Referred by artifact_filepath ( artifact_id ) +Referred by artifact_output_processing_job ( artifact_id ) +Referred by artifact_processing_job ( artifact_id ) +Referred by ebi_run_accession ( artifact_id ) +Referred by parent_artifact ( artifact_id ) +Referred by parent_artifact ( parent_id -> artifact_id ) +Referred by prep_template ( artifact_id ) Referred by study_artifact ( artifact_id ) - namename + <use id='nn' x='1202' y='925' xlink:href='#nn'/><a xlink:href='#qiita.artifact_name'><text id='qiita.artifact.name' x='1219' y='935'>name</text><title>name * varchar -t generated_timestampgenerated_timestamp +<text x='1389' y='932' text-anchor='end' class='colType'>t</text> <use id='nn' x='1202' y='941' xlink:href='#nn'/><a xlink:href='#qiita.artifact_generated_timestamp'><text id='qiita.artifact.generated_timestamp' x='1219' y='951'>generated_timestamp</text><title>generated_timestamp * timestamp -d idx_artifact ( command_id ) command_idcommand_id +<text x='1389' y='948' text-anchor='end' class='colType'>d</text> <use id='idx' x='1202' y='956' xlink:href='#idx'><title>idx_artifact ( command_id ) command_idcommand_id bigint -References software_command ( command_id ) - command_parameterscommand_parameters +<a xlink:href='#qiita.artifact.command_id'><use id='fk' x='1380' y='956' xlink:href='#fk'/><title>References software_command ( command_id ) + command_parameterscommand_parameters varchar Varchar in dbschema but is JSON in the postgresDB -t idx_artifact_0 ( visibility_id ) visibility_idvisibility_id +<text x='1389' y='980' text-anchor='end' class='colType'>t</text> <use id='nn' x='1202' y='989' xlink:href='#nn'/><use id='idx' x='1202' y='988' xlink:href='#idx'><title>idx_artifact_0 ( visibility_id ) visibility_idvisibility_id * bigint If the artifact is sandbox, awaiting_for_approval, private or public -References visibility ( visibility_id ) - idx_artifact_1 ( artifact_type_id ) artifact_type_idartifact_type_id +<a xlink:href='#qiita.artifact.visibility_id'><use id='fk' x='1380' y='988' xlink:href='#fk'/><title>References visibility ( visibility_id ) + idx_artifact_1 ( artifact_type_id ) artifact_type_idartifact_type_id integer -References artifact_type ( artifact_type_id ) - idx_artifact_2 ( data_type_id ) data_type_iddata_type_id +<a xlink:href='#qiita.artifact.artifact_type_id'><use id='fk' x='1380' y='1004' xlink:href='#fk'/><title>References artifact_type ( artifact_type_id ) + idx_artifact_2 ( data_type_id ) data_type_iddata_type_id * bigint -References data_type ( data_type_id ) - submitted_to_vampssubmitted_to_vamps -* boolean default 'FALSE' -b +References data_type ( data_type_id ) + submitted_to_vampssubmitted_to_vamps +* boolean default 'FALSE' +b - - - -artifact_filepathTable qiita.artifact_filepath - Pk idx_artifact_filepath ( artifact_id, filepath_id ) idx_artifact_filepath ( artifact_id ) artifact_idartifact_id +<rect class='entity' style='stroke:none;' x='1040' y='952' width='128' height='80' rx='8' ry='8' /> +<path d='M 1040 980 L 1040 960 Q 1040 952 1048 952 L 1160 952 Q 1168 952 1168 960 L 1168 980 L1040 980 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1040' y='952' width='128' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.artifact_filepath'><text x='1048' y='971' >artifact_filepath</text><title>Table qiita.artifact_filepath + Pk idx_artifact_filepath ( artifact_id, filepath_id ) idx_artifact_filepath ( artifact_id ) artifact_idartifact_id * bigint -References artifact ( artifact_id ) - Pk idx_artifact_filepath ( artifact_id, filepath_id ) idx_artifact_filepath ( filepath_id ) filepath_idfilepath_id +<a xlink:href='#qiita.artifact_filepath.artifact_id'><use id='fk' x='1156' y='988' xlink:href='#fk'/><title>References artifact ( artifact_id ) + Pk idx_artifact_filepath ( artifact_id, filepath_id ) idx_artifact_filepath ( filepath_id ) filepath_idfilepath_id * bigint -References filepath ( filepath_id ) +References filepath ( filepath_id ) - - - -artifact_output_processing_jobTable qiita.artifact_output_processing_job - idx_artifact_output_processing_job ( artifact_id ) artifact_idartifact_id +<rect class='entity' style='stroke:none;' x='1760' y='1368' width='224' height='96' rx='8' ry='8' /> +<path d='M 1760 1396 L 1760 1376 Q 1760 1368 1768 1368 L 1976 1368 Q 1984 1368 1984 1376 L 1984 1396 L1760 1396 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1760' y='1368' width='224' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.artifact_output_processing_job'><text x='1769' y='1387' >artifact_output_processing_job</text><title>Table qiita.artifact_output_processing_job + idx_artifact_output_processing_job ( artifact_id ) artifact_idartifact_id * bigint -References artifact ( artifact_id ) - idx_artifact_output_processing_job ( processing_job_id ) processing_job_idprocessing_job_id +<a xlink:href='#qiita.artifact_output_processing_job.artifact_id'><use id='fk' x='1972' y='1404' xlink:href='#fk'/><title>References artifact ( artifact_id ) + idx_artifact_output_processing_job ( processing_job_id ) processing_job_idprocessing_job_id * bigint -References processing_job ( processing_job_id ) - idx_artifact_output_processing_job ( command_output_id ) command_output_idcommand_output_id +<a xlink:href='#qiita.artifact_output_processing_job.processing_job_id'><use id='fk' x='1972' y='1420' xlink:href='#fk'/><title>References processing_job ( processing_job_id ) + idx_artifact_output_processing_job ( command_output_id ) command_output_idcommand_output_id * bigint -References command_output ( command_output_id ) +References command_output ( command_output_id ) - - - -artifact_processing_jobTable qiita.artifact_processing_job - Pk idx_artifact_processing_job ( artifact_id, processing_job_id ) idx_artifact_processing_job ( artifact_id ) artifact_idartifact_id +<rect class='entity' style='stroke:none;' x='1728' y='1272' width='176' height='80' rx='8' ry='8' /> +<path d='M 1728 1300 L 1728 1280 Q 1728 1272 1736 1272 L 1896 1272 Q 1904 1272 1904 1280 L 1904 1300 L1728 1300 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1728' y='1272' width='176' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.artifact_processing_job'><text x='1738' y='1291' >artifact_processing_job</text><title>Table qiita.artifact_processing_job + Pk idx_artifact_processing_job ( artifact_id, processing_job_id ) idx_artifact_processing_job ( artifact_id ) artifact_idartifact_id * bigint -References artifact ( artifact_id ) - Pk idx_artifact_processing_job ( artifact_id, processing_job_id ) idx_artifact_processing_job ( processing_job_id ) processing_job_idprocessing_job_id +<a xlink:href='#qiita.artifact_processing_job.artifact_id'><use id='fk' x='1892' y='1308' xlink:href='#fk'/><title>References artifact ( artifact_id ) + Pk idx_artifact_processing_job ( artifact_id, processing_job_id ) idx_artifact_processing_job ( processing_job_id ) processing_job_idprocessing_job_id * bigint -References processing_job ( processing_job_id ) +References processing_job ( processing_job_id ) - - - -artifact_typeTable qiita.artifact_type +<rect class='entity' style='stroke:none;' x='1408' y='872' width='224' height='144' rx='8' ry='8' /> +<path d='M 1408 900 L 1408 880 Q 1408 872 1416 872 L 1624 872 Q 1632 872 1632 880 L 1632 900 L1408 900 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1408' y='872' width='224' height='144' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.artifact_type'><text x='1474' y='891' >artifact_type</text><title>Table qiita.artifact_type Type of artifact - Pk pk_filetype ( artifact_type_id ) artifact_type_idartifact_type_id + <use id='nn' x='1410' y='909' xlink:href='#nn'/><use id='pk' x='1410' y='908' xlink:href='#pk'><title>Pk pk_filetype ( artifact_type_id ) artifact_type_idartifact_type_id * bigserial -Referred by artifact ( artifact_type_id ) -Referred by artifact_type_filepath_type ( artifact_type_id ) -Referred by command_output ( artifact_type_id ) -Referred by parameter_artifact_type ( artifact_type_id ) +<a xlink:href='#qiita.artifact_type.artifact_type_id'><use id='ref' x='1620' y='908' xlink:href='#ref'/><title>Referred by artifact ( artifact_type_id ) +Referred by artifact_type_filepath_type ( artifact_type_id ) +Referred by command_output ( artifact_type_id ) +Referred by parameter_artifact_type ( artifact_type_id ) Referred by software_artifact_type ( artifact_type_id ) - Unq idx_filetype ( artifact_type ) artifact_typeartifact_type + <use id='nn' x='1410' y='925' xlink:href='#nn'/><use id='unq' x='1410' y='924' xlink:href='#unq'><title>Unq idx_filetype ( artifact_type ) artifact_typeartifact_type * varchar -t descriptiondescription +<text x='1629' y='932' text-anchor='end' class='colType'>t</text> <use id='nn' x='1410' y='941' xlink:href='#nn'/><a xlink:href='#qiita.artifact_type_description'><text id='qiita.artifact_type.description' x='1427' y='951'>description</text><title>description * varchar -t can_be_submitted_to_ebican_be_submitted_to_ebi -* boolean default 'FALSE' -b can_be_submitted_to_vampscan_be_submitted_to_vamps -* boolean default 'FALSE' -b is_user_uploadableis_user_uploadable +<text x='1629' y='948' text-anchor='end' class='colType'>t</text> <use id='nn' x='1410' y='957' xlink:href='#nn'/><a xlink:href='#qiita.artifact_type_can_be_submitted_to_ebi'><text id='qiita.artifact_type.can_be_submitted_to_ebi' x='1427' y='967'>can_be_submitted_to_ebi</text><title>can_be_submitted_to_ebi +* boolean default 'FALSE' +b can_be_submitted_to_vampscan_be_submitted_to_vamps +* boolean default 'FALSE' +b is_user_uploadableis_user_uploadable boolean -b +b - - - -artifact_type_filepath_typeTable qiita.artifact_type_filepath_type - Pk idx_artifact_type_filepath_type ( artifact_type_id, filepath_type_id ) idx_artifact_type_filepath_type ( artifact_type_id ) artifact_type_idartifact_type_id +<rect class='entity' style='stroke:none;' x='1376' y='728' width='192' height='96' rx='8' ry='8' /> +<path d='M 1376 756 L 1376 736 Q 1376 728 1384 728 L 1560 728 Q 1568 728 1568 736 L 1568 756 L1376 756 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1376' y='728' width='192' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.artifact_type_filepath_type'><text x='1380' y='747' >artifact_type_filepath_type</text><title>Table qiita.artifact_type_filepath_type + Pk idx_artifact_type_filepath_type ( artifact_type_id, filepath_type_id ) idx_artifact_type_filepath_type ( artifact_type_id ) artifact_type_idartifact_type_id * bigint -References artifact_type ( artifact_type_id ) - Pk idx_artifact_type_filepath_type ( artifact_type_id, filepath_type_id ) idx_artifact_type_filepath_type ( filepath_type_id ) filepath_type_idfilepath_type_id +<a xlink:href='#qiita.artifact_type_filepath_type.artifact_type_id'><use id='fk' x='1556' y='764' xlink:href='#fk'/><title>References artifact_type ( artifact_type_id ) + Pk idx_artifact_type_filepath_type ( artifact_type_id, filepath_type_id ) idx_artifact_type_filepath_type ( filepath_type_id ) filepath_type_idfilepath_type_id * bigint -References filepath_type ( filepath_type_id ) - requiredrequired -* boolean default 'TRUE' -b +References filepath_type ( filepath_type_id ) + requiredrequired +* boolean default 'TRUE' +b - - - -checksum_algorithmTable qiita.checksum_algorithm - Pk pk_checksum_algorithm ( checksum_algorithm_id ) checksum_algorithm_idchecksum_algorithm_id +<rect class='entity' style='stroke:none;' x='736' y='952' width='192' height='80' rx='8' ry='8' /> +<path d='M 736 980 L 736 960 Q 736 952 744 952 L 920 952 Q 928 952 928 960 L 928 980 L736 980 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='736' y='952' width='192' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.checksum_algorithm'><text x='763' y='971' >checksum_algorithm</text><title>Table qiita.checksum_algorithm + Pk pk_checksum_algorithm ( checksum_algorithm_id ) checksum_algorithm_idchecksum_algorithm_id * bigserial -Referred by filepath ( checksum_algorithm_id ) - Unq idx_checksum_algorithm ( name ) namename +<a xlink:href='#qiita.checksum_algorithm.checksum_algorithm_id'><use id='ref' x='916' y='988' xlink:href='#ref'/><title>Referred by filepath ( checksum_algorithm_id ) + Unq idx_checksum_algorithm ( name ) namename * varchar -t +t - - - -column_controlled_vocabulariesTable qiita.column_controlled_vocabularies +<rect class='entity' style='stroke:none;' x='272' y='1160' width='224' height='80' rx='8' ry='8' /> +<path d='M 272 1188 L 272 1168 Q 272 1160 280 1160 L 488 1160 Q 496 1160 496 1168 L 496 1188 L272 1188 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='272' y='1160' width='224' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.column_controlled_vocabularies'><text x='278' y='1179' >column_controlled_vocabularies</text><title>Table qiita.column_controlled_vocabularies Table relates a column with a controlled vocabulary. - Pk idx_column_controlled_vocabularies ( controlled_vocab_id, column_name ) idx_column_controlled_vocabularies_1 ( controlled_vocab_id ) controlled_vocab_idcontrolled_vocab_id + <use id='nn' x='274' y='1197' xlink:href='#nn'/><use id='pk' x='274' y='1196' xlink:href='#pk'><title>Pk idx_column_controlled_vocabularies ( controlled_vocab_id, column_name ) idx_column_controlled_vocabularies_1 ( controlled_vocab_id ) controlled_vocab_idcontrolled_vocab_id * bigserial -References controlled_vocab ( controlled_vocab_id ) - Pk idx_column_controlled_vocabularies ( controlled_vocab_id, column_name ) idx_column_controlled_vocabularies_0 ( column_name ) column_namecolumn_name +<a xlink:href='#qiita.column_controlled_vocabularies.controlled_vocab_id'><use id='fk' x='484' y='1196' xlink:href='#fk'/><title>References controlled_vocab ( controlled_vocab_id ) + Pk idx_column_controlled_vocabularies ( controlled_vocab_id, column_name ) idx_column_controlled_vocabularies_0 ( column_name ) column_namecolumn_name * varchar -References mixs_field_description ( column_name ) +References mixs_field_description ( column_name ) - - - -column_ontologyTable qiita.column_ontology +<rect class='entity' style='stroke:none;' x='272' y='1416' width='176' height='112' rx='8' ry='8' /> +<path d='M 272 1444 L 272 1424 Q 272 1416 280 1416 L 440 1416 Q 448 1416 448 1424 L 448 1444 L272 1444 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='272' y='1416' width='176' height='112' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.column_ontology'><text x='302' y='1435' >column_ontology</text><title>Table qiita.column_ontology This table relates a column with an ontology. - Pk idx_column_ontology ( column_name, ontology_short_name ) idx_column_ontology_0 ( column_name ) column_namecolumn_name + <use id='nn' x='274' y='1453' xlink:href='#nn'/><use id='pk' x='274' y='1452' xlink:href='#pk'><title>Pk idx_column_ontology ( column_name, ontology_short_name ) idx_column_ontology_0 ( column_name ) column_namecolumn_name * varchar -References mixs_field_description ( column_name ) - Pk idx_column_ontology ( column_name, ontology_short_name ) ontology_short_nameontology_short_name +<a xlink:href='#qiita.column_ontology.column_name'><use id='fk' x='436' y='1452' xlink:href='#fk'/><title>References mixs_field_description ( column_name ) + Pk idx_column_ontology ( column_name, ontology_short_name ) ontology_short_nameontology_short_name * varchar -t bioportal_idbioportal_id +<text x='445' y='1476' text-anchor='end' class='colType'>t</text> <use id='nn' x='274' y='1485' xlink:href='#nn'/><a xlink:href='#qiita.column_ontology_bioportal_id'><text id='qiita.column_ontology.bioportal_id' x='291' y='1495'>bioportal_id</text><title>bioportal_id * integer -# ontology_branch_idontology_branch_id +<text x='445' y='1492' text-anchor='end' class='colType'>#</text> <a xlink:href='#qiita.column_ontology_ontology_branch_id'><text id='qiita.column_ontology.ontology_branch_id' x='291' y='1511'>ontology_branch_id</text><title>ontology_branch_id varchar -t +t - - - -command_outputTable qiita.command_output - Pk pk_command_output ( command_output_id ) command_output_idcommand_output_id +<rect class='entity' style='stroke:none;' x='1728' y='1128' width='176' height='128' rx='8' ry='8' /> +<path d='M 1728 1156 L 1728 1136 Q 1728 1128 1736 1128 L 1896 1128 Q 1904 1128 1904 1136 L 1904 1156 L1728 1156 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1728' y='1128' width='176' height='128' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.command_output'><text x='1757' y='1147' >command_output</text><title>Table qiita.command_output + Pk pk_command_output ( command_output_id ) command_output_idcommand_output_id * bigserial -Referred by artifact_output_processing_job ( command_output_id ) +<a xlink:href='#qiita.command_output.command_output_id'><use id='ref' x='1892' y='1164' xlink:href='#ref'/><title>Referred by artifact_output_processing_job ( command_output_id ) Referred by default_workflow_edge_connections ( parent_output_id -> command_output_id ) - Unq idx_command_output ( name, command_id ) namename + <use id='nn' x='1730' y='1181' xlink:href='#nn'/><use id='unq' x='1730' y='1180' xlink:href='#unq'><title>Unq idx_command_output ( name, command_id ) namename * varchar -t Unq idx_command_output ( name, command_id ) idx_command_output ( command_id ) command_idcommand_id +<text x='1901' y='1188' text-anchor='end' class='colType'>t</text> <use id='nn' x='1730' y='1197' xlink:href='#nn'/><use id='unq' x='1730' y='1196' xlink:href='#unq'><title>Unq idx_command_output ( name, command_id ) idx_command_output ( command_id ) command_idcommand_id * bigint -References software_command ( command_id ) - idx_command_output ( artifact_type_id ) artifact_type_idartifact_type_id +<a xlink:href='#qiita.command_output.command_id'><use id='fk' x='1892' y='1196' xlink:href='#fk'/><title>References software_command ( command_id ) + idx_command_output ( artifact_type_id ) artifact_type_idartifact_type_id * bigint -References artifact_type ( artifact_type_id ) - check_biom_mergecheck_biom_merge -* boolean default 'False' -b +References artifact_type ( artifact_type_id ) + check_biom_mergecheck_biom_merge +* boolean default 'False' +b - - - -command_parameterTable qiita.command_parameter - Pk pk_command_parameter ( command_parameter_id ) command_parameter_idcommand_parameter_id +<rect class='entity' style='stroke:none;' x='2192' y='952' width='208' height='176' rx='8' ry='8' /> +<path d='M 2192 980 L 2192 960 Q 2192 952 2200 952 L 2392 952 Q 2400 952 2400 960 L 2400 980 L2192 980 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2192' y='952' width='208' height='176' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.command_parameter'><text x='2225' y='971' >command_parameter</text><title>Table qiita.command_parameter + Pk pk_command_parameter ( command_parameter_id ) command_parameter_idcommand_parameter_id * bigserial -Referred by default_workflow_edge_connections ( child_input_id -> command_parameter_id ) +<a xlink:href='#qiita.command_parameter.command_parameter_id'><use id='ref' x='2388' y='988' xlink:href='#ref'/><title>Referred by default_workflow_edge_connections ( child_input_id -> command_parameter_id ) Referred by parameter_artifact_type ( command_parameter_id ) - idx_command_parameter ( command_id ) Unq idx_command_parameter_0 ( command_id, parameter_name ) command_idcommand_id + <use id='nn' x='2194' y='1005' xlink:href='#nn'/><use id='unq' x='2194' y='1004' xlink:href='#unq'><title>idx_command_parameter ( command_id ) Unq idx_command_parameter_0 ( command_id, parameter_name ) command_idcommand_id * bigint -References software_command ( command_id ) - Unq idx_command_parameter_0 ( command_id, parameter_name ) parameter_nameparameter_name +<a xlink:href='#qiita.command_parameter.command_id'><use id='fk' x='2388' y='1004' xlink:href='#fk'/><title>References software_command ( command_id ) + Unq idx_command_parameter_0 ( command_id, parameter_name ) parameter_nameparameter_name * varchar -t parameter_typeparameter_type +<text x='2397' y='1028' text-anchor='end' class='colType'>t</text> <use id='nn' x='2194' y='1037' xlink:href='#nn'/><a xlink:href='#qiita.command_parameter_parameter_type'><text id='qiita.command_parameter.parameter_type' x='2211' y='1047'>parameter_type</text><title>parameter_type * varchar -t requiredrequired +<text x='2397' y='1044' text-anchor='end' class='colType'>t</text> <use id='nn' x='2194' y='1053' xlink:href='#nn'/><a xlink:href='#qiita.command_parameter_required'><text id='qiita.command_parameter.required' x='2211' y='1063'>required</text><title>required * boolean -b default_valuedefault_value +<text x='2397' y='1060' text-anchor='end' class='colType'>b</text> <a xlink:href='#qiita.command_parameter_default_value'><text id='qiita.command_parameter.default_value' x='2211' y='1079'>default_value</text><title>default_value varchar -t name_ordername_order +<text x='2397' y='1076' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.command_parameter_name_order'><text id='qiita.command_parameter.name_order' x='2211' y='1095'>name_order</text><title>name_order integer -# check_biom_mergecheck_biom_merge -* boolean default 'False' -b +# check_biom_mergecheck_biom_merge +* boolean default 'False' +b - - - -controlled_vocabTable qiita.controlled_vocab - Pk pk_controlled_vocabularies ( controlled_vocab_id ) controlled_vocab_idcontrolled_vocab_id +<rect class='entity' style='stroke:none;' x='48' y='1160' width='176' height='80' rx='8' ry='8' /> +<path d='M 48 1188 L 48 1168 Q 48 1160 56 1160 L 216 1160 Q 224 1160 224 1168 L 224 1188 L48 1188 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='48' y='1160' width='176' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.controlled_vocab'><text x='78' y='1179' >controlled_vocab</text><title>Table qiita.controlled_vocab + Pk pk_controlled_vocabularies ( controlled_vocab_id ) controlled_vocab_idcontrolled_vocab_id * bigserial -Referred by column_controlled_vocabularies ( controlled_vocab_id ) +<a xlink:href='#qiita.controlled_vocab.controlled_vocab_id'><use id='ref' x='212' y='1196' xlink:href='#ref'/><title>Referred by column_controlled_vocabularies ( controlled_vocab_id ) Referred by controlled_vocab_values ( controlled_vocab_id ) - controlled_vocabcontrolled_vocab + <use id='nn' x='50' y='1213' xlink:href='#nn'/><a xlink:href='#qiita.controlled_vocab_controlled_vocab'><text id='qiita.controlled_vocab.controlled_vocab' x='67' y='1223'>controlled_vocab</text><title>controlled_vocab * varchar -t +t - - - -controlled_vocab_valuesTable qiita.controlled_vocab_values - Pk pk_controlled_vocab_values ( vocab_value_id ) vocab_value_idvocab_value_id +<rect class='entity' style='stroke:none;' x='48' y='1288' width='176' height='128' rx='8' ry='8' /> +<path d='M 48 1316 L 48 1296 Q 48 1288 56 1288 L 216 1288 Q 224 1288 224 1296 L 224 1316 L48 1316 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='48' y='1288' width='176' height='128' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.controlled_vocab_values'><text x='54' y='1307' >controlled_vocab_values</text><title>Table qiita.controlled_vocab_values + Pk pk_controlled_vocab_values ( vocab_value_id ) vocab_value_idvocab_value_id * bigserial -# idx_controlled_vocab_values ( controlled_vocab_id ) controlled_vocab_idcontrolled_vocab_id +<text x='221' y='1332' text-anchor='end' class='colType'>#</text> <use id='nn' x='50' y='1341' xlink:href='#nn'/><use id='idx' x='50' y='1340' xlink:href='#idx'><title>idx_controlled_vocab_values ( controlled_vocab_id ) controlled_vocab_idcontrolled_vocab_id * bigint -References controlled_vocab ( controlled_vocab_id ) - termterm +<a xlink:href='#qiita.controlled_vocab_values.controlled_vocab_id'><use id='fk' x='212' y='1340' xlink:href='#fk'/><title>References controlled_vocab ( controlled_vocab_id ) + termterm * varchar -t order_byorder_by +<text x='221' y='1364' text-anchor='end' class='colType'>t</text> <use id='nn' x='50' y='1373' xlink:href='#nn'/><a xlink:href='#qiita.controlled_vocab_values_order_by'><text id='qiita.controlled_vocab_values.order_by' x='67' y='1383'>order_by</text><title>order_by * varchar -t default_itemdefault_item +<text x='221' y='1380' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.controlled_vocab_values_default_item'><text id='qiita.controlled_vocab_values.default_item' x='67' y='1399'>default_item</text><title>default_item varchar -t +t - - - -data_directoryTable qiita.data_directory - Pk pk_data_directory ( data_directory_id ) data_directory_iddata_directory_id +<rect class='entity' style='stroke:none;' x='576' y='920' width='160' height='128' rx='8' ry='8' /> +<path d='M 576 948 L 576 928 Q 576 920 584 920 L 728 920 Q 736 920 736 928 L 736 948 L576 948 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='576' y='920' width='160' height='128' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.data_directory'><text x='605' y='939' >data_directory</text><title>Table qiita.data_directory + Pk pk_data_directory ( data_directory_id ) data_directory_iddata_directory_id * bigserial -Referred by filepath ( data_directory_id ) - data_typedata_type +<a xlink:href='#qiita.data_directory.data_directory_id'><use id='ref' x='724' y='956' xlink:href='#ref'/><title>Referred by filepath ( data_directory_id ) + data_typedata_type * varchar -t mountpointmountpoint +<text x='733' y='980' text-anchor='end' class='colType'>t</text> <use id='nn' x='578' y='989' xlink:href='#nn'/><a xlink:href='#qiita.data_directory_mountpoint'><text id='qiita.data_directory.mountpoint' x='595' y='999'>mountpoint</text><title>mountpoint * varchar -t subdirectorysubdirectory +<text x='733' y='996' text-anchor='end' class='colType'>t</text> <use id='nn' x='578' y='1005' xlink:href='#nn'/><a xlink:href='#qiita.data_directory_subdirectory'><text id='qiita.data_directory.subdirectory' x='595' y='1015'>subdirectory</text><title>subdirectory * boolean default FALSE -b activeactive +<text x='733' y='1012' text-anchor='end' class='colType'>b</text> <use id='nn' x='578' y='1021' xlink:href='#nn'/><a xlink:href='#qiita.data_directory_active'><text id='qiita.data_directory.active' x='595' y='1031'>active</text><title>active * boolean -b +b - - - -data_typeTable qiita.data_type - Pk pk_data_type ( data_type_id ) data_type_iddata_type_id +<rect class='entity' style='stroke:none;' x='704' y='1112' width='128' height='80' rx='8' ry='8' /> +<path d='M 704 1140 L 704 1120 Q 704 1112 712 1112 L 824 1112 Q 832 1112 832 1120 L 832 1140 L704 1140 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='704' y='1112' width='128' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.data_type'><text x='732' y='1131' >data_type</text><title>Table qiita.data_type + Pk pk_data_type ( data_type_id ) data_type_iddata_type_id * bigserial -Referred by analysis_filepath ( data_type_id ) -Referred by artifact ( data_type_id ) +<a xlink:href='#qiita.data_type.data_type_id'><use id='ref' x='820' y='1148' xlink:href='#ref'/><title>Referred by analysis_filepath ( data_type_id ) +Referred by artifact ( data_type_id ) Referred by prep_template ( data_type_id ) - Unq idx_data_type ( data_type ) data_typedata_type + <use id='nn' x='706' y='1165' xlink:href='#nn'/><use id='unq' x='706' y='1164' xlink:href='#unq'><title>Unq idx_data_type ( data_type ) data_typedata_type * varchar Data type (16S, metabolome, etc) the job will use -t +t - - - -default_parameter_setTable qiita.default_parameter_set - Pk pk_default_parameter_set ( default_parameter_set_id ) default_parameter_set_iddefault_parameter_set_id +<rect class='entity' style='stroke:none;' x='2416' y='1096' width='208' height='112' rx='8' ry='8' /> +<path d='M 2416 1124 L 2416 1104 Q 2416 1096 2424 1096 L 2616 1096 Q 2624 1096 2624 1104 L 2624 1124 L2416 1124 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2416' y='1096' width='208' height='112' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.default_parameter_set'><text x='2443' y='1115' >default_parameter_set</text><title>Table qiita.default_parameter_set + Pk pk_default_parameter_set ( default_parameter_set_id ) default_parameter_set_iddefault_parameter_set_id * bigserial -Referred by default_workflow_node ( default_parameter_set_id ) - idx_default_parameter_set ( command_id ) Unq idx_default_parameter_set_0 ( command_id, parameter_set_name ) command_idcommand_id +<a xlink:href='#qiita.default_parameter_set.default_parameter_set_id'><use id='ref' x='2612' y='1132' xlink:href='#ref'/><title>Referred by default_workflow_node ( default_parameter_set_id ) + idx_default_parameter_set ( command_id ) Unq idx_default_parameter_set_0 ( command_id, parameter_set_name ) command_idcommand_id * bigint -References software_command ( command_id ) - Unq idx_default_parameter_set_0 ( command_id, parameter_set_name ) parameter_set_nameparameter_set_name +<a xlink:href='#qiita.default_parameter_set.command_id'><use id='fk' x='2612' y='1148' xlink:href='#fk'/><title>References software_command ( command_id ) + Unq idx_default_parameter_set_0 ( command_id, parameter_set_name ) parameter_set_nameparameter_set_name * varchar -t parameter_setparameter_set +<text x='2621' y='1172' text-anchor='end' class='colType'>t</text> <use id='nn' x='2418' y='1181' xlink:href='#nn'/><a xlink:href='#qiita.default_parameter_set_parameter_set'><text id='qiita.default_parameter_set.parameter_set' x='2435' y='1191'>parameter_set</text><title>parameter_set * varchar This is a varchar here - but is of type JSON in postgresql. -t +t - - - -default_workflowTable qiita.default_workflow - Pk pk_default_workflow ( default_workflow_id ) default_workflow_iddefault_workflow_id +<rect class='entity' style='stroke:none;' x='2656' y='1032' width='176' height='96' rx='8' ry='8' /> +<path d='M 2656 1060 L 2656 1040 Q 2656 1032 2664 1032 L 2824 1032 Q 2832 1032 2832 1040 L 2832 1060 L2656 1060 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2656' y='1032' width='176' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.default_workflow'><text x='2685' y='1051' >default_workflow</text><title>Table qiita.default_workflow + Pk pk_default_workflow ( default_workflow_id ) default_workflow_iddefault_workflow_id * bigserial -Referred by default_workflow_node ( default_workflow_id ) - Unq idx_default_workflow ( software_id, name ) idx_default_workflow ( software_id ) software_idsoftware_id +<a xlink:href='#qiita.default_workflow.default_workflow_id'><use id='ref' x='2820' y='1068' xlink:href='#ref'/><title>Referred by default_workflow_node ( default_workflow_id ) + Unq idx_default_workflow ( software_id, name ) idx_default_workflow ( software_id ) software_idsoftware_id * bigint -References software ( software_id ) - Unq idx_default_workflow ( software_id, name ) namename +<a xlink:href='#qiita.default_workflow.software_id'><use id='fk' x='2820' y='1084' xlink:href='#fk'/><title>References software ( software_id ) + Unq idx_default_workflow ( software_id, name ) namename * varchar -t +t - - - -default_workflow_edgeTable qiita.default_workflow_edge - Pk pk_default_workflow_edge ( default_workflow_edge_id ) default_workflow_edge_iddefault_workflow_edge_id +<rect class='entity' style='stroke:none;' x='2640' y='1224' width='208' height='96' rx='8' ry='8' /> +<path d='M 2640 1252 L 2640 1232 Q 2640 1224 2648 1224 L 2840 1224 Q 2848 1224 2848 1232 L 2848 1252 L2640 1252 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2640' y='1224' width='208' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.default_workflow_edge'><text x='2666' y='1243' >default_workflow_edge</text><title>Table qiita.default_workflow_edge + Pk pk_default_workflow_edge ( default_workflow_edge_id ) default_workflow_edge_iddefault_workflow_edge_id * bigserial -Referred by default_workflow_edge_connections ( default_workflow_edge_id ) - idx_default_workflow_edge ( parent_id ) parent_idparent_id +<a xlink:href='#qiita.default_workflow_edge.default_workflow_edge_id'><use id='ref' x='2836' y='1260' xlink:href='#ref'/><title>Referred by default_workflow_edge_connections ( default_workflow_edge_id ) + idx_default_workflow_edge ( parent_id ) parent_idparent_id * bigint -References default_workflow_node ( parent_id -> default_workflow_node_id ) - idx_default_workflow_edge ( child_id ) child_idchild_id +<a xlink:href='#qiita.default_workflow_edge.parent_id'><use id='fk' x='2836' y='1276' xlink:href='#fk'/><title>References default_workflow_node ( parent_id -> default_workflow_node_id ) + idx_default_workflow_edge ( child_id ) child_idchild_id * bigint -References default_workflow_node ( child_id -> default_workflow_node_id ) +References default_workflow_node ( child_id -> default_workflow_node_id ) - - - -default_workflow_edge_connectionsTable qiita.default_workflow_edge_connections - Pk idx_default_workflow_edge_connections ( default_workflow_edge_id, parent_output_id, child_input_id ) idx_default_workflow_edge_connections_0 ( default_workflow_edge_id ) default_workflow_edge_iddefault_workflow_edge_id +<rect class='entity' style='stroke:none;' x='2384' y='1368' width='256' height='96' rx='8' ry='8' /> +<path d='M 2384 1396 L 2384 1376 Q 2384 1368 2392 1368 L 2632 1368 Q 2640 1368 2640 1376 L 2640 1396 L2384 1396 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2384' y='1368' width='256' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.default_workflow_edge_connections'><text x='2392' y='1387' >default_workflow_edge_connections</text><title>Table qiita.default_workflow_edge_connections + Pk idx_default_workflow_edge_connections ( default_workflow_edge_id, parent_output_id, child_input_id ) idx_default_workflow_edge_connections_0 ( default_workflow_edge_id ) default_workflow_edge_iddefault_workflow_edge_id * bigint -References default_workflow_edge ( default_workflow_edge_id ) - Pk idx_default_workflow_edge_connections ( default_workflow_edge_id, parent_output_id, child_input_id ) idx_default_workflow_edge_connections ( parent_output_id ) parent_output_idparent_output_id +<a xlink:href='#qiita.default_workflow_edge_connections.default_workflow_edge_id'><use id='fk' x='2628' y='1404' xlink:href='#fk'/><title>References default_workflow_edge ( default_workflow_edge_id ) + Pk idx_default_workflow_edge_connections ( default_workflow_edge_id, parent_output_id, child_input_id ) idx_default_workflow_edge_connections ( parent_output_id ) parent_output_idparent_output_id * bigint -References command_output ( parent_output_id -> command_output_id ) - Pk idx_default_workflow_edge_connections ( default_workflow_edge_id, parent_output_id, child_input_id ) idx_default_workflow_edge_connections ( child_input_id ) child_input_idchild_input_id +<a xlink:href='#qiita.default_workflow_edge_connections.parent_output_id'><use id='fk' x='2628' y='1420' xlink:href='#fk'/><title>References command_output ( parent_output_id -> command_output_id ) + Pk idx_default_workflow_edge_connections ( default_workflow_edge_id, parent_output_id, child_input_id ) idx_default_workflow_edge_connections ( child_input_id ) child_input_idchild_input_id * bigint -References command_parameter ( child_input_id -> command_parameter_id ) +References command_parameter ( child_input_id -> command_parameter_id ) - - - -default_workflow_nodeTable qiita.default_workflow_node - Pk pk_default_workflow_command ( default_workflow_node_id ) default_workflow_node_iddefault_workflow_node_id +<rect class='entity' style='stroke:none;' x='2416' y='1224' width='208' height='112' rx='8' ry='8' /> +<path d='M 2416 1252 L 2416 1232 Q 2416 1224 2424 1224 L 2616 1224 Q 2624 1224 2624 1232 L 2624 1252 L2416 1252 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2416' y='1224' width='208' height='112' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.default_workflow_node'><text x='2441' y='1243' >default_workflow_node</text><title>Table qiita.default_workflow_node + Pk pk_default_workflow_command ( default_workflow_node_id ) default_workflow_node_iddefault_workflow_node_id * bigserial -Referred by default_workflow_edge ( parent_id -> default_workflow_node_id ) +<a xlink:href='#qiita.default_workflow_node.default_workflow_node_id'><use id='ref' x='2612' y='1260' xlink:href='#ref'/><title>Referred by default_workflow_edge ( parent_id -> default_workflow_node_id ) Referred by default_workflow_edge ( child_id -> default_workflow_node_id ) - idx_default_workflow_command_0 ( default_workflow_id ) default_workflow_iddefault_workflow_id + <use id='nn' x='2418' y='1277' xlink:href='#nn'/><use id='idx' x='2418' y='1276' xlink:href='#idx'><title>idx_default_workflow_command_0 ( default_workflow_id ) default_workflow_iddefault_workflow_id * bigint -References default_workflow ( default_workflow_id ) - idx_default_workflow_command ( command_id ) command_idcommand_id +<a xlink:href='#qiita.default_workflow_node.default_workflow_id'><use id='fk' x='2612' y='1276' xlink:href='#fk'/><title>References default_workflow ( default_workflow_id ) + idx_default_workflow_command ( command_id ) command_idcommand_id * bigint -References software_command ( command_id ) - idx_default_workflow_command ( default_parameter_set_id ) default_parameter_set_iddefault_parameter_set_id +<a xlink:href='#qiita.default_workflow_node.command_id'><use id='fk' x='2612' y='1292' xlink:href='#fk'/><title>References software_command ( command_id ) + idx_default_workflow_command ( default_parameter_set_id ) default_parameter_set_iddefault_parameter_set_id * bigint -References default_parameter_set ( default_parameter_set_id ) +References default_parameter_set ( default_parameter_set_id ) - - - -ebi_run_accessionTable qiita.ebi_run_accession - Pk idx_ebi_run_accession ( sample_id, artifact_id, ebi_run_accession ) idx_ebi_run_accession ( sample_id ) sample_idsample_id +<rect class='entity' style='stroke:none;' x='1344' y='1096' width='160' height='96' rx='8' ry='8' /> +<path d='M 1344 1124 L 1344 1104 Q 1344 1096 1352 1096 L 1496 1096 Q 1504 1096 1504 1104 L 1504 1124 L1344 1124 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1344' y='1096' width='160' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.ebi_run_accession'><text x='1363' y='1115' >ebi_run_accession</text><title>Table qiita.ebi_run_accession + Pk idx_ebi_run_accession ( sample_id, artifact_id, ebi_run_accession ) idx_ebi_run_accession ( sample_id ) sample_idsample_id * varchar -References study_sample ( sample_id ) - Pk idx_ebi_run_accession ( sample_id, artifact_id, ebi_run_accession ) idx_ebi_run_accession ( artifact_id ) artifact_idartifact_id +<a xlink:href='#qiita.ebi_run_accession.sample_id'><use id='fk' x='1492' y='1132' xlink:href='#fk'/><title>References study_sample ( sample_id ) + Pk idx_ebi_run_accession ( sample_id, artifact_id, ebi_run_accession ) idx_ebi_run_accession ( artifact_id ) artifact_idartifact_id * bigint -References artifact ( artifact_id ) - Pk idx_ebi_run_accession ( sample_id, artifact_id, ebi_run_accession ) ebi_run_accessionebi_run_accession +<a xlink:href='#qiita.ebi_run_accession.artifact_id'><use id='fk' x='1492' y='1148' xlink:href='#fk'/><title>References artifact ( artifact_id ) + Pk idx_ebi_run_accession ( sample_id, artifact_id, ebi_run_accession ) ebi_run_accessionebi_run_accession * bigint -# +# - - - -environmental_packageTable qiita.environmental_package - Pk pk_environmental_package ( environmental_package_name ) environmental_package_nameenvironmental_package_name +<rect class='entity' style='stroke:none;' x='2176' y='168' width='240' height='80' rx='8' ry='8' /> +<path d='M 2176 196 L 2176 176 Q 2176 168 2184 168 L 2408 168 Q 2416 168 2416 176 L 2416 196 L2176 196 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2176' y='168' width='240' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.environmental_package'><text x='2217' y='187' >environmental_package</text><title>Table qiita.environmental_package + Pk pk_environmental_package ( environmental_package_name ) environmental_package_nameenvironmental_package_name * varchar The name of the environmental package -Referred by study_environmental_package ( environmental_package_name ) - metadata_tablemetadata_table +<a xlink:href='#qiita.environmental_package.environmental_package_name'><use id='ref' x='2404' y='204' xlink:href='#ref'/><title>Referred by study_environmental_package ( environmental_package_name ) + metadata_tablemetadata_table * varchar Contains the name of the table that contains the pre-defined metadata columns for the environmental package -t +t - - - -filepathTable qiita.filepath - Pk pk_filepath ( filepath_id ) filepath_idfilepath_id +<rect class='entity' style='stroke:none;' x='640' y='744' width='192' height='160' rx='8' ry='8' /> +<path d='M 640 772 L 640 752 Q 640 744 648 744 L 824 744 Q 832 744 832 752 L 832 772 L640 772 ' style='fill:url(#tbg_C0D4F3);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='640' y='744' width='192' height='160' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.filepath'><text x='707' y='763' >filepath</text><title>Table qiita.filepath + Pk pk_filepath ( filepath_id ) filepath_idfilepath_id * bigserial -Referred by analysis_filepath ( filepath_id ) -Referred by artifact_filepath ( filepath_id ) -Referred by prep_template_filepath ( filepath_id ) -Referred by reference ( sequence_filepath -> filepath_id ) -Referred by reference ( taxonomy_filepath -> filepath_id ) -Referred by reference ( tree_filepath -> filepath_id ) +<a xlink:href='#qiita.filepath.filepath_id'><use id='ref' x='820' y='780' xlink:href='#ref'/><title>Referred by analysis_filepath ( filepath_id ) +Referred by artifact_filepath ( filepath_id ) +Referred by prep_template_filepath ( filepath_id ) +Referred by reference ( sequence_filepath -> filepath_id ) +Referred by reference ( taxonomy_filepath -> filepath_id ) +Referred by reference ( tree_filepath -> filepath_id ) Referred by sample_template_filepath ( filepath_id ) - filepathfilepath + <use id='nn' x='642' y='797' xlink:href='#nn'/><a xlink:href='#qiita.filepath_filepath'><text id='qiita.filepath.filepath' x='659' y='807'>filepath</text><title>filepath * varchar -t idx_filepath ( filepath_type_id ) filepath_type_idfilepath_type_id +<text x='829' y='804' text-anchor='end' class='colType'>t</text> <use id='nn' x='642' y='813' xlink:href='#nn'/><use id='idx' x='642' y='812' xlink:href='#idx'><title>idx_filepath ( filepath_type_id ) filepath_type_idfilepath_type_id * bigint -References filepath_type ( filepath_type_id ) - checksumchecksum +<a xlink:href='#qiita.filepath.filepath_type_id'><use id='fk' x='820' y='812' xlink:href='#fk'/><title>References filepath_type ( filepath_type_id ) + checksumchecksum * varchar -t checksum_algorithm_idchecksum_algorithm_id +<text x='829' y='836' text-anchor='end' class='colType'>t</text> <use id='nn' x='642' y='845' xlink:href='#nn'/><a xlink:href='#qiita.filepath_checksum_algorithm_id'><text id='qiita.filepath.checksum_algorithm_id' x='659' y='855' onmouseover="hghl(['filepath_fk_filepath_0','qiita.checksum_algorithm.checksum_algorithm_id'])" onmouseout="uhghl(['filepath_fk_filepath_0','qiita.checksum_algorithm.checksum_algorithm_id'])">checksum_algorithm_id</text><title>checksum_algorithm_id * bigint -References checksum_algorithm ( checksum_algorithm_id ) - idx_filepath_0 ( data_directory_id ) data_directory_iddata_directory_id +<a xlink:href='#qiita.filepath.checksum_algorithm_id'><use id='fk' x='820' y='844' xlink:href='#fk'/><title>References checksum_algorithm ( checksum_algorithm_id ) + idx_filepath_0 ( data_directory_id ) data_directory_iddata_directory_id bigserial -References data_directory ( data_directory_id ) - fp_sizefp_size +<a xlink:href='#qiita.filepath.data_directory_id'><use id='fk' x='820' y='860' xlink:href='#fk'/><title>References data_directory ( data_directory_id ) + fp_sizefp_size bigint -# +# - - - -filepath_typeTable qiita.filepath_type - Pk pk_filepath_type ( filepath_type_id ) filepath_type_idfilepath_type_id +<rect class='entity' style='stroke:none;' x='816' y='696' width='144' height='80' rx='8' ry='8' /> +<path d='M 816 724 L 816 704 Q 816 696 824 696 L 952 696 Q 960 696 960 704 L 960 724 L816 724 ' style='fill:url(#tbg_C0D4F3);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='816' y='696' width='144' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.filepath_type'><text x='841' y='715' >filepath_type</text><title>Table qiita.filepath_type + Pk pk_filepath_type ( filepath_type_id ) filepath_type_idfilepath_type_id * bigserial -Referred by artifact_type_filepath_type ( filepath_type_id ) +<a xlink:href='#qiita.filepath_type.filepath_type_id'><use id='ref' x='948' y='732' xlink:href='#ref'/><title>Referred by artifact_type_filepath_type ( filepath_type_id ) Referred by filepath ( filepath_type_id ) - Unq idx_filepath_type ( filepath_type ) filepath_typefilepath_type + <use id='unq' x='818' y='748' xlink:href='#unq'><title>Unq idx_filepath_type ( filepath_type ) filepath_typefilepath_type varchar -t +t - - - -investigationTable qiita.investigation +<rect class='entity' style='stroke:none;' x='2176' y='264' width='208' height='112' rx='8' ry='8' /> +<path d='M 2176 292 L 2176 272 Q 2176 264 2184 264 L 2376 264 Q 2384 264 2384 272 L 2384 292 L2176 292 ' style='fill:url(#tbg_C0D4F3);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2176' y='264' width='208' height='112' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.investigation'><text x='2236' y='283' >investigation</text><title>Table qiita.investigation Overarching investigation information.An investigation comprises one or more individual studies. - Pk pk_investigation ( investigation_id ) investigation_idinvestigation_id + <use id='nn' x='2178' y='301' xlink:href='#nn'/><use id='pk' x='2178' y='300' xlink:href='#pk'><title>Pk pk_investigation ( investigation_id ) investigation_idinvestigation_id * bigserial -Referred by investigation_study ( investigation_id ) - investigation_nameinvestigation_name +<a xlink:href='#qiita.investigation.investigation_id'><use id='ref' x='2372' y='300' xlink:href='#ref'/><title>Referred by investigation_study ( investigation_id ) + investigation_nameinvestigation_name * varchar -t investigation_descriptioninvestigation_description +<text x='2381' y='324' text-anchor='end' class='colType'>t</text> <use id='nn' x='2178' y='333' xlink:href='#nn'/><a xlink:href='#qiita.investigation_investigation_description'><text id='qiita.investigation.investigation_description' x='2195' y='343'>investigation_description</text><title>investigation_description * varchar Describes the overarching goal of the investigation -t idx_investigation ( contact_person_id ) contact_person_idcontact_person_id +<text x='2381' y='340' text-anchor='end' class='colType'>t</text> <use id='idx' x='2178' y='348' xlink:href='#idx'><title>idx_investigation ( contact_person_id ) contact_person_idcontact_person_id bigint -References study_person ( contact_person_id -> study_person_id ) +References study_person ( contact_person_id -> study_person_id ) - - - -investigation_studyTable qiita.investigation_study - Pk idx_investigation_study ( investigation_id, study_id ) idx_investigation_study_investigation ( investigation_id ) investigation_idinvestigation_id +<rect class='entity' style='stroke:none;' x='2000' y='376' width='144' height='80' rx='8' ry='8' /> +<path d='M 2000 404 L 2000 384 Q 2000 376 2008 376 L 2136 376 Q 2144 376 2144 384 L 2144 404 L2000 404 ' style='fill:url(#tbg_C0D4F3);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2000' y='376' width='144' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.investigation_study'><text x='2007' y='395' >investigation_study</text><title>Table qiita.investigation_study + Pk idx_investigation_study ( investigation_id, study_id ) idx_investigation_study_investigation ( investigation_id ) investigation_idinvestigation_id * bigint -References investigation ( investigation_id ) - Pk idx_investigation_study ( investigation_id, study_id ) idx_investigation_study_study ( study_id ) study_idstudy_id +<a xlink:href='#qiita.investigation_study.investigation_id'><use id='fk' x='2132' y='412' xlink:href='#fk'/><title>References investigation ( investigation_id ) + Pk idx_investigation_study ( investigation_id, study_id ) idx_investigation_study_study ( study_id ) study_idstudy_id * bigint -References study ( study_id ) +References study ( study_id ) - - - -loggingTable qiita.logging - Pk pk_logging ( logging_id ) logging_idlogging_id +<rect class='entity' style='stroke:none;' x='976' y='1288' width='128' height='128' rx='8' ry='8' /> +<path d='M 976 1316 L 976 1296 Q 976 1288 984 1288 L 1096 1288 Q 1104 1288 1104 1296 L 1104 1316 L976 1316 ' style='fill:url(#tbg_C0D4F3);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='976' y='1288' width='128' height='128' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.logging'><text x='1014' y='1307' >logging</text><title>Table qiita.logging + Pk pk_logging ( logging_id ) logging_idlogging_id * bigserial -Referred by analysis ( logging_id ) +<a xlink:href='#qiita.logging.logging_id'><use id='ref' x='1092' y='1324' xlink:href='#ref'/><title>Referred by analysis ( logging_id ) Referred by processing_job ( logging_id ) - timetime + <use id='nn' x='978' y='1341' xlink:href='#nn'/><a xlink:href='#qiita.logging_time'><text id='qiita.logging.time' x='995' y='1351'>time</text><title>time * timestamp Time the error was thrown -d idx_logging_0 ( severity_id ) severity_idseverity_id +<text x='1101' y='1348' text-anchor='end' class='colType'>d</text> <use id='nn' x='978' y='1357' xlink:href='#nn'/><use id='idx' x='978' y='1356' xlink:href='#idx'><title>idx_logging_0 ( severity_id ) severity_idseverity_id * integer -References severity ( severity_id ) - msgmsg +<a xlink:href='#qiita.logging.severity_id'><use id='fk' x='1092' y='1356' xlink:href='#fk'/><title>References severity ( severity_id ) + msgmsg * varchar Error message thrown -t informationinformation +<text x='1101' y='1380' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.logging_information'><text id='qiita.logging.information' x='995' y='1399'>information</text><title>information varchar Other applicable information (depending on error) -t +t - - - -messageTable qiita.message - Pk pk_message ( message_id ) message_idmessage_id +<rect class='entity' style='stroke:none;' x='1504' y='1272' width='144' height='112' rx='8' ry='8' /> +<path d='M 1504 1300 L 1504 1280 Q 1504 1272 1512 1272 L 1640 1272 Q 1648 1272 1648 1280 L 1648 1300 L1504 1300 ' style='fill:url(#tbg_A8C4EF);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1504' y='1272' width='144' height='112' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.message'><text x='1546' y='1291' >message</text><title>Table qiita.message + Pk pk_message ( message_id ) message_idmessage_id * bigserial -Referred by message_user ( message_id ) - messagemessage +<a xlink:href='#qiita.message.message_id'><use id='ref' x='1636' y='1308' xlink:href='#ref'/><title>Referred by message_user ( message_id ) + messagemessage * varchar -t message_timemessage_time +<text x='1645' y='1332' text-anchor='end' class='colType'>t</text> <use id='nn' x='1506' y='1341' xlink:href='#nn'/><a xlink:href='#qiita.message_message_time'><text id='qiita.message.message_time' x='1523' y='1351'>message_time</text><title>message_time * timestamp default current_timestamp -d expirationexpiration +<text x='1645' y='1348' text-anchor='end' class='colType'>d</text> <a xlink:href='#qiita.message_expiration'><text id='qiita.message.expiration' x='1523' y='1367'>expiration</text><title>expiration timestamp -d +d - - - -message_userTable qiita.message_user - Pk idx_message_user ( email, message_id ) idx_message_user_1 ( email ) emailemail +<rect class='entity' style='stroke:none;' x='1312' y='1256' width='112' height='96' rx='8' ry='8' /> +<path d='M 1312 1284 L 1312 1264 Q 1312 1256 1320 1256 L 1416 1256 Q 1424 1256 1424 1264 L 1424 1284 L1312 1284 ' style='fill:url(#tbg_A8C4EF);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1312' y='1256' width='112' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.message_user'><text x='1321' y='1275' >message_user</text><title>Table qiita.message_user + Pk idx_message_user ( email, message_id ) idx_message_user_1 ( email ) emailemail * varchar -References qiita_user ( email ) - Pk idx_message_user ( email, message_id ) idx_message_user_0 ( message_id ) message_idmessage_id +<a xlink:href='#qiita.message_user.email'><use id='fk' x='1412' y='1292' xlink:href='#fk'/><title>References qiita_user ( email ) + Pk idx_message_user ( email, message_id ) idx_message_user_0 ( message_id ) message_idmessage_id * bigint -References message ( message_id ) - readread -* boolean default 'false' +<a xlink:href='#qiita.message_user.message_id'><use id='fk' x='1412' y='1308' xlink:href='#fk'/><title>References message ( message_id ) + readread +* boolean default 'false' Whether the message has been read or not. -b +b - - - -mixs_field_descriptionTable qiita.mixs_field_description - Pk pk_mixs_field_description ( column_name ) column_namecolumn_name +<rect class='entity' style='stroke:none;' x='272' y='1256' width='160' height='144' rx='8' ry='8' /> +<path d='M 272 1284 L 272 1264 Q 272 1256 280 1256 L 424 1256 Q 432 1256 432 1264 L 432 1284 L272 1284 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='272' y='1256' width='160' height='144' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.mixs_field_description'><text x='277' y='1275' >mixs_field_description</text><title>Table qiita.mixs_field_description + Pk pk_mixs_field_description ( column_name ) column_namecolumn_name * varchar -Referred by column_controlled_vocabularies ( column_name ) +<a xlink:href='#qiita.mixs_field_description.column_name'><use id='ref' x='420' y='1292' xlink:href='#ref'/><title>Referred by column_controlled_vocabularies ( column_name ) Referred by column_ontology ( column_name ) - data_typedata_type + <use id='nn' x='274' y='1309' xlink:href='#nn'/><a xlink:href='#qiita.mixs_field_description_data_type'><text id='qiita.mixs_field_description.data_type' x='291' y='1319'>data_type</text><title>data_type * varchar -t desc_or_valuedesc_or_value +<text x='429' y='1316' text-anchor='end' class='colType'>t</text> <use id='nn' x='274' y='1325' xlink:href='#nn'/><a xlink:href='#qiita.mixs_field_description_desc_or_value'><text id='qiita.mixs_field_description.desc_or_value' x='291' y='1335'>desc_or_value</text><title>desc_or_value * varchar -t definitiondefinition +<text x='429' y='1332' text-anchor='end' class='colType'>t</text> <use id='nn' x='274' y='1341' xlink:href='#nn'/><a xlink:href='#qiita.mixs_field_description_definition'><text id='qiita.mixs_field_description.definition' x='291' y='1351'>definition</text><title>definition * varchar -t min_lengthmin_length +<text x='429' y='1348' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.mixs_field_description_min_length'><text id='qiita.mixs_field_description.min_length' x='291' y='1367'>min_length</text><title>min_length integer -# activeactive +<text x='429' y='1364' text-anchor='end' class='colType'>#</text> <use id='nn' x='274' y='1373' xlink:href='#nn'/><a xlink:href='#qiita.mixs_field_description_active'><text id='qiita.mixs_field_description.active' x='291' y='1383'>active</text><title>active * integer -# +# - - - -oauth_identifiersTable qiita.oauth_identifiers - Pk pk_oauth_identifiers ( client_id ) client_idclient_id +<rect class='entity' style='stroke:none;' x='2352' y='680' width='128' height='80' rx='8' ry='8' /> +<path d='M 2352 708 L 2352 688 Q 2352 680 2360 680 L 2472 680 Q 2480 680 2480 688 L 2480 708 L2352 708 ' style='fill:url(#tbg_B7C8E3);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2352' y='680' width='128' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.oauth_identifiers'><text x='2358' y='699' >oauth_identifiers</text><title>Table qiita.oauth_identifiers + Pk pk_oauth_identifiers ( client_id ) client_idclient_id * varchar(50) -Referred by oauth_software ( client_id ) - client_secretclient_secret +<a xlink:href='#qiita.oauth_identifiers.client_id'><use id='ref' x='2468' y='716' xlink:href='#ref'/><title>Referred by oauth_software ( client_id ) + client_secretclient_secret varchar(255) -t +t - - - -oauth_softwareTable qiita.oauth_software - Pk idx_oauth_software ( software_id, client_id ) idx_oauth_software ( software_id ) software_idsoftware_id +<rect class='entity' style='stroke:none;' x='2192' y='680' width='128' height='80' rx='8' ry='8' /> +<path d='M 2192 708 L 2192 688 Q 2192 680 2200 680 L 2312 680 Q 2320 680 2320 688 L 2320 708 L2192 708 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2192' y='680' width='128' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.oauth_software'><text x='2203' y='699' >oauth_software</text><title>Table qiita.oauth_software + Pk idx_oauth_software ( software_id, client_id ) idx_oauth_software ( software_id ) software_idsoftware_id * bigint -References software ( software_id ) - Pk idx_oauth_software ( software_id, client_id ) idx_oauth_software ( client_id ) client_idclient_id +<a xlink:href='#qiita.oauth_software.software_id'><use id='fk' x='2308' y='716' xlink:href='#fk'/><title>References software ( software_id ) + Pk idx_oauth_software ( software_id, client_id ) idx_oauth_software ( client_id ) client_idclient_id * bigint -References oauth_identifiers ( client_id ) +References oauth_identifiers ( client_id ) - - - -ontologyTable qiita.ontology - Pk pk_ontology ( ontology_id ) ontology_idontology_id +<rect class='entity' style='stroke:none;' x='576' y='1400' width='128' height='176' rx='8' ry='8' /> +<path d='M 576 1428 L 576 1408 Q 576 1400 584 1400 L 696 1400 Q 704 1400 704 1408 L 704 1428 L576 1428 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='576' y='1400' width='128' height='176' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.ontology'><text x='609' y='1419' >ontology</text><title>Table qiita.ontology + Pk pk_ontology ( ontology_id ) ontology_idontology_id * bigint -Referred by term ( ontology_id ) - Unq idx_ontology ( ontology ) ontologyontology +<a xlink:href='#qiita.ontology.ontology_id'><use id='ref' x='692' y='1436' xlink:href='#ref'/><title>Referred by term ( ontology_id ) + Unq idx_ontology ( ontology ) ontologyontology * varchar -t fully_loadedfully_loaded +<text x='701' y='1460' text-anchor='end' class='colType'>t</text> <use id='nn' x='578' y='1469' xlink:href='#nn'/><a xlink:href='#qiita.ontology_fully_loaded'><text id='qiita.ontology.fully_loaded' x='595' y='1479'>fully_loaded</text><title>fully_loaded * boolean -b fullnamefullname +<text x='701' y='1476' text-anchor='end' class='colType'>b</text> <a xlink:href='#qiita.ontology_fullname'><text id='qiita.ontology.fullname' x='595' y='1495'>fullname</text><title>fullname varchar -t query_urlquery_url +<text x='701' y='1492' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.ontology_query_url'><text id='qiita.ontology.query_url' x='595' y='1511'>query_url</text><title>query_url varchar -t source_urlsource_url +<text x='701' y='1508' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.ontology_source_url'><text id='qiita.ontology.source_url' x='595' y='1527'>source_url</text><title>source_url varchar -t definitiondefinition +<text x='701' y='1524' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.ontology_definition'><text id='qiita.ontology.definition' x='595' y='1543'>definition</text><title>definition text -t load_dateload_date +<text x='701' y='1540' text-anchor='end' class='colType'>t</text> <use id='nn' x='578' y='1549' xlink:href='#nn'/><a xlink:href='#qiita.ontology_load_date'><text id='qiita.ontology.load_date' x='595' y='1559'>load_date</text><title>load_date * date -d +d - - - -parameter_artifact_typeTable qiita.parameter_artifact_type - Pk idx_parameter_artifact_type ( command_parameter_id, artifact_type_id ) idx_parameter_artifact_type ( command_parameter_id ) command_parameter_idcommand_parameter_id +<rect class='entity' style='stroke:none;' x='1728' y='1032' width='208' height='80' rx='8' ry='8' /> +<path d='M 1728 1060 L 1728 1040 Q 1728 1032 1736 1032 L 1928 1032 Q 1936 1032 1936 1040 L 1936 1060 L1728 1060 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1728' y='1032' width='208' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.parameter_artifact_type'><text x='1750' y='1051' >parameter_artifact_type</text><title>Table qiita.parameter_artifact_type + Pk idx_parameter_artifact_type ( command_parameter_id, artifact_type_id ) idx_parameter_artifact_type ( command_parameter_id ) command_parameter_idcommand_parameter_id * bigserial -References command_parameter ( command_parameter_id ) - Pk idx_parameter_artifact_type ( command_parameter_id, artifact_type_id ) idx_parameter_artifact_type ( artifact_type_id ) artifact_type_idartifact_type_id +<a xlink:href='#qiita.parameter_artifact_type.command_parameter_id'><use id='fk' x='1924' y='1068' xlink:href='#fk'/><title>References command_parameter ( command_parameter_id ) + Pk idx_parameter_artifact_type ( command_parameter_id, artifact_type_id ) idx_parameter_artifact_type ( artifact_type_id ) artifact_type_idartifact_type_id * bigint -References artifact_type ( artifact_type_id ) +References artifact_type ( artifact_type_id ) - - - -parent_artifactTable qiita.parent_artifact - Pk idx_parent_artifact ( artifact_id, parent_id ) idx_parent_artifact ( artifact_id ) artifact_idartifact_id +<rect class='entity' style='stroke:none;' x='1040' y='840' width='112' height='80' rx='8' ry='8' /> +<path d='M 1040 868 L 1040 848 Q 1040 840 1048 840 L 1144 840 Q 1152 840 1152 848 L 1152 868 L1040 868 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1040' y='840' width='112' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.parent_artifact'><text x='1044' y='859' >parent_artifact</text><title>Table qiita.parent_artifact + Pk idx_parent_artifact ( artifact_id, parent_id ) idx_parent_artifact ( artifact_id ) artifact_idartifact_id * bigint -References artifact ( artifact_id ) - Pk idx_parent_artifact ( artifact_id, parent_id ) idx_parent_artifact ( parent_id ) parent_idparent_id +<a xlink:href='#qiita.parent_artifact.artifact_id'><use id='fk' x='1140' y='876' xlink:href='#fk'/><title>References artifact ( artifact_id ) + Pk idx_parent_artifact ( artifact_id, parent_id ) idx_parent_artifact ( parent_id ) parent_idparent_id * bigint -References artifact ( parent_id -> artifact_id ) +References artifact ( parent_id -> artifact_id ) - - - -parent_processing_jobTable qiita.parent_processing_job - Pk idx_parent_processing_job ( parent_id, child_id ) idx_parent_processing_job ( parent_id ) parent_idparent_id +<rect class='entity' style='stroke:none;' x='2016' y='1384' width='160' height='80' rx='8' ry='8' /> +<path d='M 2016 1412 L 2016 1392 Q 2016 1384 2024 1384 L 2168 1384 Q 2176 1384 2176 1392 L 2176 1412 L2016 1412 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2016' y='1384' width='160' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.parent_processing_job'><text x='2021' y='1403' >parent_processing_job</text><title>Table qiita.parent_processing_job + Pk idx_parent_processing_job ( parent_id, child_id ) idx_parent_processing_job ( parent_id ) parent_idparent_id * bigint -References processing_job ( parent_id -> processing_job_id ) - Pk idx_parent_processing_job ( parent_id, child_id ) idx_parent_processing_job ( child_id ) child_idchild_id +<a xlink:href='#qiita.parent_processing_job.parent_id'><use id='fk' x='2164' y='1420' xlink:href='#fk'/><title>References processing_job ( parent_id -> processing_job_id ) + Pk idx_parent_processing_job ( parent_id, child_id ) idx_parent_processing_job ( child_id ) child_idchild_id * bigint -References processing_job ( child_id -> processing_job_id ) +References processing_job ( child_id -> processing_job_id ) - - - -per_study_tagsTable qiita.per_study_tags - Pk pk_per_study_tags ( study_tag_id, study_id ) idx_per_study_tags ( study_tag_id ) study_tag_idstudy_tag_id +<rect class='entity' style='stroke:none;' x='2192' y='520' width='128' height='80' rx='8' ry='8' /> +<path d='M 2192 548 L 2192 528 Q 2192 520 2200 520 L 2312 520 Q 2320 520 2320 528 L 2320 548 L2192 548 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2192' y='520' width='128' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.per_study_tags'><text x='2204' y='539' >per_study_tags</text><title>Table qiita.per_study_tags + Pk pk_per_study_tags ( study_tag_id, study_id ) idx_per_study_tags ( study_tag_id ) study_tag_idstudy_tag_id * bigint -References study_tags ( study_tag_id ) - Pk pk_per_study_tags ( study_tag_id, study_id ) idx_per_study_tags ( study_id ) study_idstudy_id +<a xlink:href='#qiita.per_study_tags.study_tag_id'><use id='fk' x='2308' y='556' xlink:href='#fk'/><title>References study_tags ( study_tag_id ) + Pk pk_per_study_tags ( study_tag_id, study_id ) idx_per_study_tags ( study_id ) study_idstudy_id * integer -References study ( study_id ) +References study ( study_id ) - - - -portal_typeTable qiita.portal_type +<rect class='entity' style='stroke:none;' x='768' y='552' width='160' height='96' rx='8' ry='8' /> +<path d='M 768 580 L 768 560 Q 768 552 776 552 L 920 552 Q 928 552 928 560 L 928 580 L768 580 ' style='fill:url(#tbg_C0D4F3);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='768' y='552' width='160' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.portal_type'><text x='807' y='571' >portal_type</text><title>Table qiita.portal_type What portals are available to show a study in - Pk pk_portal_type ( portal_type_id ) portal_type_idportal_type_id + <use id='nn' x='770' y='589' xlink:href='#nn'/><use id='pk' x='770' y='588' xlink:href='#pk'><title>Pk pk_portal_type ( portal_type_id ) portal_type_idportal_type_id * bigserial -Referred by analysis ( portal_type_id ) -Referred by analysis_portal ( portal_type_id ) +<a xlink:href='#qiita.portal_type.portal_type_id'><use id='ref' x='916' y='588' xlink:href='#ref'/><title>Referred by analysis ( portal_type_id ) +Referred by analysis_portal ( portal_type_id ) Referred by study_portal ( portal_type_id ) - portalportal + <use id='nn' x='770' y='605' xlink:href='#nn'/><a xlink:href='#qiita.portal_type_portal'><text id='qiita.portal_type.portal' x='787' y='615'>portal</text><title>portal * varchar -t portal_descriptionportal_description +<text x='925' y='612' text-anchor='end' class='colType'>t</text> <use id='nn' x='770' y='621' xlink:href='#nn'/><a xlink:href='#qiita.portal_type_portal_description'><text id='qiita.portal_type.portal_description' x='787' y='631'>portal_description</text><title>portal_description * varchar -t +t - - - -prep_templateTable qiita.prep_template - Pk pk_prep_template ( prep_template_id ) prep_template_idprep_template_id +<rect class='entity' style='stroke:none;' x='1232' y='456' width='208' height='192' rx='8' ry='8' /> +<path d='M 1232 484 L 1232 464 Q 1232 456 1240 456 L 1432 456 Q 1440 456 1440 464 L 1440 484 L1232 484 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1232' y='456' width='208' height='192' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.prep_template'><text x='1285' y='475' >prep_template</text><title>Table qiita.prep_template + Pk pk_prep_template ( prep_template_id ) prep_template_idprep_template_id * bigserial -Referred by prep_template_filepath ( prep_template_id ) -Referred by prep_template_processing_job ( prep_template_id ) -Referred by prep_template_sample ( prep_template_id ) +<a xlink:href='#qiita.prep_template.prep_template_id'><use id='ref' x='1428' y='492' xlink:href='#ref'/><title>Referred by prep_template_filepath ( prep_template_id ) +Referred by prep_template_processing_job ( prep_template_id ) +Referred by prep_template_sample ( prep_template_id ) Referred by study_prep_template ( prep_template_id ) - idx_prep_template ( data_type_id ) data_type_iddata_type_id + <use id='nn' x='1234' y='509' xlink:href='#nn'/><use id='idx' x='1234' y='508' xlink:href='#idx'><title>idx_prep_template ( data_type_id ) data_type_iddata_type_id * bigint -References data_type ( data_type_id ) - preprocessing_statuspreprocessing_status -* varchar default 'not_preprocessed' -t investigation_typeinvestigation_type +<a xlink:href='#qiita.prep_template.data_type_id'><use id='fk' x='1428' y='508' xlink:href='#fk'/><title>References data_type ( data_type_id ) + preprocessing_statuspreprocessing_status +* varchar default 'not_preprocessed' +t investigation_typeinvestigation_type varchar -The investigation type (e.g., one of the values from EBI's set of known types) -t idx_prep_template_0 ( artifact_id ) artifact_idartifact_id +The investigation type (e.g., one of the values from EBI's set of known types) +t idx_prep_template_0 ( artifact_id ) artifact_idartifact_id bigint -References artifact ( artifact_id ) - namename -* varchar default 'Default Name' -t deprecateddeprecated +<a xlink:href='#qiita.prep_template.artifact_id'><use id='fk' x='1428' y='556' xlink:href='#fk'/><title>References artifact ( artifact_id ) + namename +* varchar default 'Default Name' +t deprecateddeprecated boolean default FALSE -t creation_timestampcreation_timestamp -timestamp default current_timestamp -t modification_timestampmodification_timestamp -timestamp default current_timestamp - - - - - - - - - -b +b creation_timestampcreation_timestamp +timestamp default FALSE +d modification_timestampmodification_timestamp +timestamp default FALSE +d - - - -prep_template_filepathTable qiita.prep_template_filepath - Pk idx_prep_template_filepath ( prep_template_id, filepath_id ) idx_prep_template_filepath ( prep_template_id ) prep_template_idprep_template_id +<rect class='entity' style='stroke:none;' x='1024' y='408' width='176' height='80' rx='8' ry='8' /> +<path d='M 1024 436 L 1024 416 Q 1024 408 1032 408 L 1192 408 Q 1200 408 1200 416 L 1200 436 L1024 436 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1024' y='408' width='176' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.prep_template_filepath'><text x='1033' y='427' >prep_template_filepath</text><title>Table qiita.prep_template_filepath + Pk idx_prep_template_filepath ( prep_template_id, filepath_id ) idx_prep_template_filepath ( prep_template_id ) prep_template_idprep_template_id * bigint -References prep_template ( prep_template_id ) - Pk idx_prep_template_filepath ( prep_template_id, filepath_id ) idx_prep_template_filepath ( filepath_id ) filepath_idfilepath_id +<a xlink:href='#qiita.prep_template_filepath.prep_template_id'><use id='fk' x='1188' y='444' xlink:href='#fk'/><title>References prep_template ( prep_template_id ) + Pk idx_prep_template_filepath ( prep_template_id, filepath_id ) idx_prep_template_filepath ( filepath_id ) filepath_idfilepath_id * bigint -References filepath ( filepath_id ) +References filepath ( filepath_id ) - - - -prep_template_processing_jobTable qiita.prep_template_processing_job - Pk idx_prep_template_processing_job ( prep_template_id, processing_job_id ) idx_prep_template_processing_job ( prep_template_id ) prep_template_idprep_template_id +<rect class='entity' style='stroke:none;' x='1728' y='920' width='208' height='80' rx='8' ry='8' /> +<path d='M 1728 948 L 1728 928 Q 1728 920 1736 920 L 1928 920 Q 1936 920 1936 928 L 1936 948 L1728 948 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1728' y='920' width='208' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.prep_template_processing_job'><text x='1731' y='939' >prep_template_processing_job</text><title>Table qiita.prep_template_processing_job + Pk idx_prep_template_processing_job ( prep_template_id, processing_job_id ) idx_prep_template_processing_job ( prep_template_id ) prep_template_idprep_template_id * bigint -References prep_template ( prep_template_id ) - Pk idx_prep_template_processing_job ( prep_template_id, processing_job_id ) idx_prep_template_processing_job ( processing_job_id ) processing_job_idprocessing_job_id +<a xlink:href='#qiita.prep_template_processing_job.prep_template_id'><use id='fk' x='1924' y='956' xlink:href='#fk'/><title>References prep_template ( prep_template_id ) + Pk idx_prep_template_processing_job ( prep_template_id, processing_job_id ) idx_prep_template_processing_job ( processing_job_id ) processing_job_idprocessing_job_id * bigint -References processing_job ( processing_job_id ) +References processing_job ( processing_job_id ) - - - -prep_template_sampleTable qiita.prep_template_sample - Pk idx_common_prep_info ( prep_template_id, sample_id ) idx_common_prep_info_1 ( prep_template_id ) prep_template_idprep_template_id +<rect class='entity' style='stroke:none;' x='1152' y='296' width='208' height='96' rx='8' ry='8' /> +<path d='M 1152 324 L 1152 304 Q 1152 296 1160 296 L 1352 296 Q 1360 296 1360 304 L 1360 324 L1152 324 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1152' y='296' width='208' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.prep_template_sample'><text x='1179' y='315' >prep_template_sample</text><title>Table qiita.prep_template_sample + Pk idx_common_prep_info ( prep_template_id, sample_id ) idx_common_prep_info_1 ( prep_template_id ) prep_template_idprep_template_id * bigint The prep template identifier -References prep_template ( prep_template_id ) - idx_common_prep_info_0 ( sample_id ) idx_common_prep_info_0 ( sample_id ) Pk idx_common_prep_info ( prep_template_id, sample_id ) sample_idsample_id +<a xlink:href='#qiita.prep_template_sample.prep_template_id'><use id='fk' x='1348' y='332' xlink:href='#fk'/><title>References prep_template ( prep_template_id ) + idx_common_prep_info_0 ( sample_id ) idx_common_prep_info_0 ( sample_id ) Pk idx_common_prep_info ( prep_template_id, sample_id ) sample_idsample_id * varchar -t ebi_experiment_accessionebi_experiment_accession +<text x='1357' y='356' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.prep_template_sample_ebi_experiment_accession'><text id='qiita.prep_template_sample.ebi_experiment_accession' x='1171' y='375'>ebi_experiment_accession</text><title>ebi_experiment_accession varchar -t +t - - - -prep_yTable qiita.prep_y +<rect class='entity' style='stroke:none;' x='992' y='296' width='144' height='80' rx='8' ry='8' /> +<path d='M 992 324 L 992 304 Q 992 296 1000 296 L 1128 296 Q 1136 296 1136 304 L 1136 324 L992 324 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='992' y='296' width='144' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.prep_y'><text x='1038' y='315' >prep_y</text><title>Table qiita.prep_y Information on how raw data y was prepared (prep template)Linked by y being raw_data_id from raw data table. - Pk pk_prep_y ( sample_id ) sample_idsample_id + <use id='nn' x='994' y='333' xlink:href='#nn'/><use id='pk' x='994' y='332' xlink:href='#pk'><title>Pk pk_prep_y ( sample_id ) sample_idsample_id * varchar -t sample_valuessample_values +<text x='1133' y='340' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.prep_y_sample_values'><text id='qiita.prep_y.sample_values' x='1011' y='359'>sample_values</text><title>sample_values varchar -Note that this is a jsonb but there DBSchema doesn't have this data type -t +Note that this is a jsonb but there DBSchema doesn't have this data type +t - - - -processing_jobTable qiita.processing_job - Pk pk_processing_job ( processing_job_id ) processing_job_idprocessing_job_id +<rect class='entity' style='stroke:none;' x='1968' y='1064' width='208' height='224' rx='8' ry='8' /> +<path d='M 1968 1092 L 1968 1072 Q 1968 1064 1976 1064 L 2168 1064 Q 2176 1064 2176 1072 L 2176 1092 L1968 1092 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1968' y='1064' width='208' height='224' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.processing_job'><text x='2021' y='1083' >processing_job</text><title>Table qiita.processing_job + Pk pk_processing_job ( processing_job_id ) processing_job_idprocessing_job_id * bigserial Using bigserial in DBSchema - however in the postgres DB this column is of type UUID. -Referred by analysis_processing_job ( processing_job_id ) -Referred by artifact_output_processing_job ( processing_job_id ) -Referred by artifact_processing_job ( processing_job_id ) -Referred by parent_processing_job ( parent_id -> processing_job_id ) -Referred by parent_processing_job ( child_id -> processing_job_id ) -Referred by prep_template_processing_job ( processing_job_id ) -Referred by processing_job_validator ( processing_job_id ) -Referred by processing_job_validator ( validator_id -> processing_job_id ) +<a xlink:href='#qiita.processing_job.processing_job_id'><use id='ref' x='2164' y='1100' xlink:href='#ref'/><title>Referred by analysis_processing_job ( processing_job_id ) +Referred by artifact_output_processing_job ( processing_job_id ) +Referred by artifact_processing_job ( processing_job_id ) +Referred by parent_processing_job ( parent_id -> processing_job_id ) +Referred by parent_processing_job ( child_id -> processing_job_id ) +Referred by prep_template_processing_job ( processing_job_id ) +Referred by processing_job_validator ( processing_job_id ) +Referred by processing_job_validator ( validator_id -> processing_job_id ) Referred by processing_job_workflow_root ( processing_job_id ) - idx_processing_job ( email ) emailemail + <use id='nn' x='1970' y='1117' xlink:href='#nn'/><use id='idx' x='1970' y='1116' xlink:href='#idx'><title>idx_processing_job ( email ) emailemail * varchar The user that launched the job -References qiita_user ( email ) - idx_processing_job ( command_id ) command_idcommand_id +<a xlink:href='#qiita.processing_job.email'><use id='fk' x='2164' y='1116' xlink:href='#fk'/><title>References qiita_user ( email ) + idx_processing_job ( command_id ) command_idcommand_id * bigint The command launched -References software_command ( command_id ) - command_parameterscommand_parameters +<a xlink:href='#qiita.processing_job.command_id'><use id='fk' x='2164' y='1132' xlink:href='#fk'/><title>References software_command ( command_id ) + command_parameterscommand_parameters * varchar The parameters used in the command in JSON format -t idx_processing_job_0 ( processing_job_status_id ) processing_job_status_idprocessing_job_status_id +<text x='2173' y='1156' text-anchor='end' class='colType'>t</text> <use id='nn' x='1970' y='1165' xlink:href='#nn'/><use id='idx' x='1970' y='1164' xlink:href='#idx'><title>idx_processing_job_0 ( processing_job_status_id ) processing_job_status_idprocessing_job_status_id * bigint -References processing_job_status ( processing_job_status_id ) - idx_processing_job_1 ( logging_id ) logging_idlogging_id +<a xlink:href='#qiita.processing_job.processing_job_status_id'><use id='fk' x='2164' y='1164' xlink:href='#fk'/><title>References processing_job_status ( processing_job_status_id ) + idx_processing_job_1 ( logging_id ) logging_idlogging_id bigint In case of failure, point to the log entry that holds more information about the error -References logging ( logging_id ) - heartbeatheartbeat +<a xlink:href='#qiita.processing_job.logging_id'><use id='fk' x='2164' y='1180' xlink:href='#fk'/><title>References logging ( logging_id ) + heartbeatheartbeat timestamp The last heartbeat received by this job -d stepstep +<text x='2173' y='1204' text-anchor='end' class='colType'>d</text> <a xlink:href='#qiita.processing_job_step'><text id='qiita.processing_job.step' x='1987' y='1223'>step</text><title>step varchar -t pendingpending +<text x='2173' y='1220' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.processing_job_pending'><text id='qiita.processing_job.pending' x='1987' y='1239'>pending</text><title>pending varchar -t hiddenhidden -* boolean default 'False' -b external_job_idexternal_job_id +<text x='2173' y='1236' text-anchor='end' class='colType'>t</text> <use id='nn' x='1970' y='1245' xlink:href='#nn'/><a xlink:href='#qiita.processing_job_hidden'><text id='qiita.processing_job.hidden' x='1987' y='1255'>hidden</text><title>hidden +* boolean default 'False' +b external_job_idexternal_job_id varchar Store an external job ID (e.g. Torque job ID) associated this Qiita job -t +t - - - -processing_job_resource_allocationTable qiita.processing_job_resource_allocation - Pk _0 ( name, job_type ) namename +<rect class='entity' style='stroke:none;' x='2656' y='1368' width='240' height='112' rx='8' ry='8' /> +<path d='M 2656 1396 L 2656 1376 Q 2656 1368 2664 1368 L 2888 1368 Q 2896 1368 2896 1376 L 2896 1396 L2656 1396 ' style='fill:url(#tbg_C1D8EE);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2656' y='1368' width='240' height='112' rx='8' ry='8' style='fill:none;stroke:#27292C'/> +<a xlink:href='#qiita.processing_job_resource_allocation'><text x='2659' y='1387' >processing_job_resource_allocation</text><title>Table qiita.processing_job_resource_allocation + Pk _0 ( name, job_type ) namename * varchar -t descriptiondescription +<text x='2893' y='1412' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.processing_job_resource_allocation_description'><text id='qiita.processing_job_resource_allocation.description' x='2675' y='1431'>description</text><title>description varchar -t Pk _0 ( name, job_type ) job_typejob_type +<text x='2893' y='1428' text-anchor='end' class='colType'>t</text> <use id='nn' x='2658' y='1437' xlink:href='#nn'/><use id='pk' x='2658' y='1436' xlink:href='#pk'><title>Pk _0 ( name, job_type ) job_typejob_type * varchar -t allocationallocation +<text x='2893' y='1444' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.processing_job_resource_allocation_allocation'><text id='qiita.processing_job_resource_allocation.allocation' x='2675' y='1463'>allocation</text><title>allocation varchar -t +t - - - -processing_job_statusTable qiita.processing_job_status - Pk pk_processing_job_status ( processing_job_status_id ) processing_job_status_idprocessing_job_status_id +<rect class='entity' style='stroke:none;' x='1728' y='1496' width='256' height='96' rx='8' ry='8' /> +<path d='M 1728 1524 L 1728 1504 Q 1728 1496 1736 1496 L 1976 1496 Q 1984 1496 1984 1504 L 1984 1524 L1728 1524 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1728' y='1496' width='256' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.processing_job_status'><text x='1783' y='1515' >processing_job_status</text><title>Table qiita.processing_job_status + Pk pk_processing_job_status ( processing_job_status_id ) processing_job_status_idprocessing_job_status_id * bigserial -Referred by processing_job ( processing_job_status_id ) - processing_job_statusprocessing_job_status +<a xlink:href='#qiita.processing_job_status.processing_job_status_id'><use id='ref' x='1972' y='1532' xlink:href='#ref'/><title>Referred by processing_job ( processing_job_status_id ) + processing_job_statusprocessing_job_status * varchar -t processing_job_status_descriptionprocessing_job_status_description +<text x='1981' y='1556' text-anchor='end' class='colType'>t</text> <use id='nn' x='1730' y='1565' xlink:href='#nn'/><a xlink:href='#qiita.processing_job_status_processing_job_status_description'><text id='qiita.processing_job_status.processing_job_status_description' x='1747' y='1575'>processing_job_status_description</text><title>processing_job_status_description * varchar -t +t - - - -processing_job_validatorTable qiita.processing_job_validator - idx_processing_job_validator ( processing_job_id ) Pk idx_processing_job_validator_0 ( processing_job_id, validator_id ) processing_job_idprocessing_job_id +<rect class='entity' style='stroke:none;' x='2192' y='1384' width='176' height='96' rx='8' ry='8' /> +<path d='M 2192 1412 L 2192 1392 Q 2192 1384 2200 1384 L 2360 1384 Q 2368 1384 2368 1392 L 2368 1412 L2192 1412 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2192' y='1384' width='176' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.processing_job_validator'><text x='2197' y='1403' >processing_job_validator</text><title>Table qiita.processing_job_validator + idx_processing_job_validator ( processing_job_id ) Pk idx_processing_job_validator_0 ( processing_job_id, validator_id ) processing_job_idprocessing_job_id * bigint -References processing_job ( processing_job_id ) - idx_processing_job_validator ( validator_id ) Pk idx_processing_job_validator_0 ( processing_job_id, validator_id ) validator_idvalidator_id +<a xlink:href='#qiita.processing_job_validator.processing_job_id'><use id='fk' x='2356' y='1420' xlink:href='#fk'/><title>References processing_job ( processing_job_id ) + idx_processing_job_validator ( validator_id ) Pk idx_processing_job_validator_0 ( processing_job_id, validator_id ) validator_idvalidator_id * bigint -References processing_job ( validator_id -> processing_job_id ) - artifact_infoartifact_info +<a xlink:href='#qiita.processing_job_validator.validator_id'><use id='fk' x='2356' y='1436' xlink:href='#fk'/><title>References processing_job ( validator_id -> processing_job_id ) + artifact_infoartifact_info varchar -t +t - - - -processing_job_workflowTable qiita.processing_job_workflow - Pk pk_processing_job_workflow ( processing_job_workflow_id ) processing_job_workflow_idprocessing_job_workflow_id +<rect class='entity' style='stroke:none;' x='2192' y='1496' width='224' height='96' rx='8' ry='8' /> +<path d='M 2192 1524 L 2192 1504 Q 2192 1496 2200 1496 L 2408 1496 Q 2416 1496 2416 1504 L 2416 1524 L2192 1524 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2192' y='1496' width='224' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.processing_job_workflow'><text x='2220' y='1515' >processing_job_workflow</text><title>Table qiita.processing_job_workflow + Pk pk_processing_job_workflow ( processing_job_workflow_id ) processing_job_workflow_idprocessing_job_workflow_id * bigserial -Referred by processing_job_workflow_root ( processing_job_workflow_id ) - idx_processing_job_workflow ( email ) emailemail +<a xlink:href='#qiita.processing_job_workflow.processing_job_workflow_id'><use id='ref' x='2404' y='1532' xlink:href='#ref'/><title>Referred by processing_job_workflow_root ( processing_job_workflow_id ) + idx_processing_job_workflow ( email ) emailemail * varchar -References qiita_user ( email ) - namename +<a xlink:href='#qiita.processing_job_workflow.email'><use id='fk' x='2404' y='1548' xlink:href='#fk'/><title>References qiita_user ( email ) + namename varchar -t +t - - - -processing_job_workflow_rootTable qiita.processing_job_workflow_root - idx_processing_job_workflow_roots ( processing_job_workflow_id ) Pk idx_processing_job_workflow_roots_0 ( processing_job_workflow_id, processing_job_id ) processing_job_workflow_idprocessing_job_workflow_id +<rect class='entity' style='stroke:none;' x='2448' y='1496' width='224' height='80' rx='8' ry='8' /> +<path d='M 2448 1524 L 2448 1504 Q 2448 1496 2456 1496 L 2664 1496 Q 2672 1496 2672 1504 L 2672 1524 L2448 1524 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2448' y='1496' width='224' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.processing_job_workflow_root'><text x='2460' y='1515' >processing_job_workflow_root</text><title>Table qiita.processing_job_workflow_root + idx_processing_job_workflow_roots ( processing_job_workflow_id ) Pk idx_processing_job_workflow_roots_0 ( processing_job_workflow_id, processing_job_id ) processing_job_workflow_idprocessing_job_workflow_id * bigint -References processing_job_workflow ( processing_job_workflow_id ) - idx_processing_job_workflow_roots ( processing_job_id ) Pk idx_processing_job_workflow_roots_0 ( processing_job_workflow_id, processing_job_id ) processing_job_idprocessing_job_id +<a xlink:href='#qiita.processing_job_workflow_root.processing_job_workflow_id'><use id='fk' x='2660' y='1532' xlink:href='#fk'/><title>References processing_job_workflow ( processing_job_workflow_id ) + idx_processing_job_workflow_roots ( processing_job_id ) Pk idx_processing_job_workflow_roots_0 ( processing_job_workflow_id, processing_job_id ) processing_job_idprocessing_job_id * bigint -References processing_job ( processing_job_id ) +References processing_job ( processing_job_id ) - - - -publicationTable qiita.publication - Pk pk_publication ( doi ) doidoi +<rect class='entity' style='stroke:none;' x='1936' y='680' width='112' height='80' rx='8' ry='8' /> +<path d='M 1936 708 L 1936 688 Q 1936 680 1944 680 L 2040 680 Q 2048 680 2048 688 L 2048 708 L1936 708 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1936' y='680' width='112' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.publication'><text x='1953' y='699' >publication</text><title>Table qiita.publication + Pk pk_publication ( doi ) doidoi * varchar -Referred by software_publication ( publication_doi -> doi ) - pubmed_idpubmed_id +<a xlink:href='#qiita.publication.doi'><use id='ref' x='2036' y='716' xlink:href='#ref'/><title>Referred by software_publication ( publication_doi -> doi ) + pubmed_idpubmed_id varchar -t +t - - - -qiita_userTable qiita.qiita_user +<rect class='entity' style='stroke:none;' x='704' y='280' width='192' height='208' rx='8' ry='8' /> +<path d='M 704 308 L 704 288 Q 704 280 712 280 L 888 280 Q 896 280 896 288 L 896 308 L704 308 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='704' y='280' width='192' height='208' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.qiita_user'><text x='765' y='299' >qiita_user</text><title>Table qiita.qiita_user Holds all user information - Pk pk_user ( email ) emailemail + <use id='nn' x='706' y='317' xlink:href='#nn'/><use id='pk' x='706' y='316' xlink:href='#pk'><title>Pk pk_user ( email ) emailemail * varchar -Referred by analysis ( email ) -Referred by analysis_users ( email ) -Referred by message_user ( email ) -Referred by processing_job ( email ) -Referred by processing_job_workflow ( email ) -Referred by study ( email ) -Referred by study_tags ( email ) +<a xlink:href='#qiita.qiita_user.email'><use id='ref' x='884' y='316' xlink:href='#ref'/><title>Referred by analysis ( email ) +Referred by analysis_users ( email ) +Referred by message_user ( email ) +Referred by processing_job ( email ) +Referred by processing_job_workflow ( email ) +Referred by study ( email ) +Referred by study_tags ( email ) Referred by study_users ( email ) - idx_user ( user_level_id ) user_level_iduser_level_id + <use id='nn' x='706' y='333' xlink:href='#nn'/><use id='idx' x='706' y='332' xlink:href='#idx'><title>idx_user ( user_level_id ) user_level_iduser_level_id * integer default 5 user level -References user_level ( user_level_id ) - passwordpassword +<a xlink:href='#qiita.qiita_user.user_level_id'><use id='fk' x='884' y='332' xlink:href='#fk'/><title>References user_level ( user_level_id ) + passwordpassword * varchar -t namename +<text x='893' y='356' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.qiita_user_name'><text id='qiita.qiita_user.name' x='723' y='375'>name</text><title>name varchar -t affiliationaffiliation +<text x='893' y='372' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.qiita_user_affiliation'><text id='qiita.qiita_user.affiliation' x='723' y='391'>affiliation</text><title>affiliation varchar -t addressaddress +<text x='893' y='388' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.qiita_user_address'><text id='qiita.qiita_user.address' x='723' y='407'>address</text><title>address varchar -t phonephone +<text x='893' y='404' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.qiita_user_phone'><text id='qiita.qiita_user.phone' x='723' y='423'>phone</text><title>phone varchar -t user_verify_codeuser_verify_code +<text x='893' y='420' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.qiita_user_user_verify_code'><text id='qiita.qiita_user.user_verify_code' x='723' y='439'>user_verify_code</text><title>user_verify_code varchar Code for initial user email verification -t pass_reset_codepass_reset_code +<text x='893' y='436' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.qiita_user_pass_reset_code'><text id='qiita.qiita_user.pass_reset_code' x='723' y='455'>pass_reset_code</text><title>pass_reset_code varchar Randomly generated code for password reset -t pass_reset_timestamppass_reset_timestamp +<text x='893' y='452' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.qiita_user_pass_reset_timestamp'><text id='qiita.qiita_user.pass_reset_timestamp' x='723' y='471'>pass_reset_timestamp</text><title>pass_reset_timestamp timestamp Time the reset code was generated -d +d - - - -referenceTable qiita.reference - Pk pk_reference ( reference_id ) reference_idreference_id +<rect class='entity' style='stroke:none;' x='2016' y='1496' width='160' height='144' rx='8' ry='8' /> +<path d='M 2016 1524 L 2016 1504 Q 2016 1496 2024 1496 L 2168 1496 Q 2176 1496 2176 1504 L 2176 1524 L2016 1524 ' style='fill:url(#tbg_C0D4F3);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2016' y='1496' width='160' height='144' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.reference'><text x='2061' y='1515' >reference</text><title>Table qiita.reference + Pk pk_reference ( reference_id ) reference_idreference_id * bigserial -# reference_namereference_name +<text x='2173' y='1540' text-anchor='end' class='colType'>#</text> <use id='nn' x='2018' y='1549' xlink:href='#nn'/><a xlink:href='#qiita.reference_reference_name'><text id='qiita.reference.reference_name' x='2035' y='1559'>reference_name</text><title>reference_name * varchar -t reference_versionreference_version +<text x='2173' y='1556' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.reference_reference_version'><text id='qiita.reference.reference_version' x='2035' y='1575'>reference_version</text><title>reference_version varchar -t idx_reference ( sequence_filepath ) sequence_filepathsequence_filepath +<text x='2173' y='1572' text-anchor='end' class='colType'>t</text> <use id='nn' x='2018' y='1581' xlink:href='#nn'/><use id='idx' x='2018' y='1580' xlink:href='#idx'><title>idx_reference ( sequence_filepath ) sequence_filepathsequence_filepath * bigint -References filepath ( sequence_filepath -> filepath_id ) - idx_reference_0 ( taxonomy_filepath ) taxonomy_filepathtaxonomy_filepath +<a xlink:href='#qiita.reference.sequence_filepath'><use id='fk' x='2164' y='1580' xlink:href='#fk'/><title>References filepath ( sequence_filepath -> filepath_id ) + idx_reference_0 ( taxonomy_filepath ) taxonomy_filepathtaxonomy_filepath bigint -References filepath ( taxonomy_filepath -> filepath_id ) - idx_reference_1 ( tree_filepath ) tree_filepathtree_filepath +<a xlink:href='#qiita.reference.taxonomy_filepath'><use id='fk' x='2164' y='1596' xlink:href='#fk'/><title>References filepath ( taxonomy_filepath -> filepath_id ) + idx_reference_1 ( tree_filepath ) tree_filepathtree_filepath bigint -References filepath ( tree_filepath -> filepath_id ) +References filepath ( tree_filepath -> filepath_id ) - - - -restrictionsTable qiita.restrictions - table_nametable_name +<rect class='entity' style='stroke:none;' x='1584' y='392' width='128' height='96' rx='8' ry='8' /> +<path d='M 1584 420 L 1584 400 Q 1584 392 1592 392 L 1704 392 Q 1712 392 1712 400 L 1712 420 L1584 420 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1584' y='392' width='128' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.restrictions'><text x='1608' y='411' >restrictions</text><title>Table qiita.restrictions + table_nametable_name varchar -t namename +<text x='1709' y='436' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.restrictions_name'><text id='qiita.restrictions.name' x='1603' y='455'>name</text><title>name varchar -t valid_valuesvalid_values +<text x='1709' y='452' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.restrictions_valid_values'><text id='qiita.restrictions.valid_values' x='1603' y='471'>valid_values</text><title>valid_values varchar array of valid values -t +t - - - -sample_template_filepathTable qiita.sample_template_filepath - Pk idx_sample_template_filepath ( study_id, filepath_id ) idx_sample_template_filepath_0 ( study_id ) study_idstudy_id +<rect class='entity' style='stroke:none;' x='1008' y='552' width='192' height='80' rx='8' ry='8' /> +<path d='M 1008 580 L 1008 560 Q 1008 552 1016 552 L 1192 552 Q 1200 552 1200 560 L 1200 580 L1008 580 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1008' y='552' width='192' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.sample_template_filepath'><text x='1017' y='571' >sample_template_filepath</text><title>Table qiita.sample_template_filepath + Pk idx_sample_template_filepath ( study_id, filepath_id ) idx_sample_template_filepath_0 ( study_id ) study_idstudy_id * bigint -References study ( study_id ) - Pk idx_sample_template_filepath ( study_id, filepath_id ) idx_sample_template_filepath_1 ( filepath_id ) filepath_idfilepath_id +<a xlink:href='#qiita.sample_template_filepath.study_id'><use id='fk' x='1188' y='588' xlink:href='#fk'/><title>References study ( study_id ) + Pk idx_sample_template_filepath ( study_id, filepath_id ) idx_sample_template_filepath_1 ( filepath_id ) filepath_idfilepath_id * bigint -References filepath ( filepath_id ) +References filepath ( filepath_id ) - - - -sample_xTable qiita.sample_x +<rect class='entity' style='stroke:none;' x='1568' y='280' width='144' height='80' rx='8' ry='8' /> +<path d='M 1568 308 L 1568 288 Q 1568 280 1576 280 L 1704 280 Q 1712 280 1712 288 L 1712 308 L1568 308 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1568' y='280' width='144' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.sample_x'><text x='1607' y='299' >sample_x</text><title>Table qiita.sample_x data for samples in study x (sample template)x is the study_id from study tableMAKE SURE sample_id IS FK TO sample_id IN required_sample_info TABLE - Pk pk_study_x_y ( sample_id ) sample_idsample_id + <use id='nn' x='1570' y='317' xlink:href='#nn'/><use id='pk' x='1570' y='316' xlink:href='#pk'><title>Pk pk_study_x_y ( sample_id ) sample_idsample_id * varchar -t sample_valuessample_values +<text x='1709' y='324' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.sample_x_sample_values'><text id='qiita.sample_x.sample_values' x='1587' y='343'>sample_values</text><title>sample_values varchar -Note that this is a jsonb but there DBSchema doesn't have this data type -t +Note that this is a jsonb but there DBSchema doesn't have this data type +t - - - -severityTable qiita.severity - Pk pk_severity ( severity_id ) severity_idseverity_id +<rect class='entity' style='stroke:none;' x='1120' y='1288' width='112' height='80' rx='8' ry='8' /> +<path d='M 1120 1316 L 1120 1296 Q 1120 1288 1128 1288 L 1224 1288 Q 1232 1288 1232 1296 L 1232 1316 L1120 1316 ' style='fill:url(#tbg_C0D4F3);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1120' y='1288' width='112' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.severity'><text x='1147' y='1307' >severity</text><title>Table qiita.severity + Pk pk_severity ( severity_id ) severity_idseverity_id * serial -Referred by logging ( severity_id ) - Unq idx_severity ( severity ) severityseverity +<a xlink:href='#qiita.severity.severity_id'><use id='ref' x='1220' y='1324' xlink:href='#ref'/><title>Referred by logging ( severity_id ) + Unq idx_severity ( severity ) severityseverity * varchar -t +t - - - -softwareTable qiita.software - Pk pk_software ( software_id ) software_idsoftware_id +<rect class='entity' style='stroke:none;' x='2432' y='888' width='176' height='192' rx='8' ry='8' /> +<path d='M 2432 916 L 2432 896 Q 2432 888 2440 888 L 2600 888 Q 2608 888 2608 896 L 2608 916 L2432 916 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2432' y='888' width='176' height='192' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.software'><text x='2488' y='907' >software</text><title>Table qiita.software + Pk pk_software ( software_id ) software_idsoftware_id * bigserial -Referred by default_workflow ( software_id ) -Referred by oauth_software ( software_id ) -Referred by software_artifact_type ( software_id ) -Referred by software_command ( software_id ) +<a xlink:href='#qiita.software.software_id'><use id='ref' x='2596' y='924' xlink:href='#ref'/><title>Referred by default_workflow ( software_id ) +Referred by oauth_software ( software_id ) +Referred by software_artifact_type ( software_id ) +Referred by software_command ( software_id ) Referred by software_publication ( software_id ) - namename + <use id='nn' x='2434' y='941' xlink:href='#nn'/><a xlink:href='#qiita.software_name'><text id='qiita.software.name' x='2451' y='951'>name</text><title>name * varchar -t versionversion +<text x='2605' y='948' text-anchor='end' class='colType'>t</text> <use id='nn' x='2434' y='957' xlink:href='#nn'/><a xlink:href='#qiita.software_version'><text id='qiita.software.version' x='2451' y='967'>version</text><title>version * varchar -t descriptiondescription +<text x='2605' y='964' text-anchor='end' class='colType'>t</text> <use id='nn' x='2434' y='973' xlink:href='#nn'/><a xlink:href='#qiita.software_description'><text id='qiita.software.description' x='2451' y='983'>description</text><title>description * varchar -t environment_scriptenvironment_script +<text x='2605' y='980' text-anchor='end' class='colType'>t</text> <use id='nn' x='2434' y='989' xlink:href='#nn'/><a xlink:href='#qiita.software_environment_script'><text id='qiita.software.environment_script' x='2451' y='999'>environment_script</text><title>environment_script * varchar -t start_scriptstart_script +<text x='2605' y='996' text-anchor='end' class='colType'>t</text> <use id='nn' x='2434' y='1005' xlink:href='#nn'/><a xlink:href='#qiita.software_start_script'><text id='qiita.software.start_script' x='2451' y='1015'>start_script</text><title>start_script * varchar -t idx_software ( software_type_id ) software_type_idsoftware_type_id +<text x='2605' y='1012' text-anchor='end' class='colType'>t</text> <use id='nn' x='2434' y='1021' xlink:href='#nn'/><use id='idx' x='2434' y='1020' xlink:href='#idx'><title>idx_software ( software_type_id ) software_type_idsoftware_type_id * bigint -References software_type ( software_type_id ) - activeactive -* boolean default 'True' -b deprecateddeprecated +<a xlink:href='#qiita.software.software_type_id'><use id='fk' x='2596' y='1020' xlink:href='#fk'/><title>References software_type ( software_type_id ) + activeactive +* boolean default 'True' +b deprecateddeprecated boolean default False -b +b - - - -software_artifact_typeTable qiita.software_artifact_type -In case that the software is of type "type plugin", it holds the artifact types that such software can validate and generate the summary. - Pk idx_software_artifact_type ( software_id, artifact_type_id ) idx_software_artifact_type ( software_id ) software_idsoftware_id +<rect class='entity' style='stroke:none;' x='1984' y='936' width='160' height='80' rx='8' ry='8' /> +<path d='M 1984 964 L 1984 944 Q 1984 936 1992 936 L 2136 936 Q 2144 936 2144 944 L 2144 964 L1984 964 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1984' y='936' width='160' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.software_artifact_type'><text x='1987' y='955' >software_artifact_type</text><title>Table qiita.software_artifact_type +In case that the software is of type "type plugin", it holds the artifact types that such software can validate and generate the summary. + Pk idx_software_artifact_type ( software_id, artifact_type_id ) idx_software_artifact_type ( software_id ) software_idsoftware_id * bigint -References software ( software_id ) - Pk idx_software_artifact_type ( software_id, artifact_type_id ) idx_software_artifact_type ( artifact_type_id ) artifact_type_idartifact_type_id +<a xlink:href='#qiita.software_artifact_type.software_id'><use id='fk' x='2132' y='972' xlink:href='#fk'/><title>References software ( software_id ) + Pk idx_software_artifact_type ( software_id, artifact_type_id ) idx_software_artifact_type ( artifact_type_id ) artifact_type_idartifact_type_id * bigint -References artifact_type ( artifact_type_id ) +References artifact_type ( artifact_type_id ) - - - -software_commandTable qiita.software_command - Pk pk_soft_command ( command_id ) command_idcommand_id +<rect class='entity' style='stroke:none;' x='2192' y='1176' width='208' height='176' rx='8' ry='8' /> +<path d='M 2192 1204 L 2192 1184 Q 2192 1176 2200 1176 L 2392 1176 Q 2400 1176 2400 1184 L 2400 1204 L2192 1204 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2192' y='1176' width='208' height='176' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.software_command'><text x='2230' y='1195' >software_command</text><title>Table qiita.software_command + Pk pk_soft_command ( command_id ) command_idcommand_id * bigserial -Referred by artifact ( command_id ) -Referred by command_output ( command_id ) -Referred by command_parameter ( command_id ) -Referred by default_parameter_set ( command_id ) -Referred by default_workflow_node ( command_id ) +<a xlink:href='#qiita.software_command.command_id'><use id='ref' x='2388' y='1212' xlink:href='#ref'/><title>Referred by artifact ( command_id ) +Referred by command_output ( command_id ) +Referred by command_parameter ( command_id ) +Referred by default_parameter_set ( command_id ) +Referred by default_workflow_node ( command_id ) Referred by processing_job ( command_id ) - namename + <use id='nn' x='2194' y='1229' xlink:href='#nn'/><a xlink:href='#qiita.software_command_name'><text id='qiita.software_command.name' x='2211' y='1239'>name</text><title>name * varchar -t idx_soft_command ( software_id ) software_idsoftware_id +<text x='2397' y='1236' text-anchor='end' class='colType'>t</text> <use id='nn' x='2194' y='1245' xlink:href='#nn'/><use id='idx' x='2194' y='1244' xlink:href='#idx'><title>idx_soft_command ( software_id ) software_idsoftware_id * bigint -References software ( software_id ) - descriptiondescription +<a xlink:href='#qiita.software_command.software_id'><use id='fk' x='2388' y='1244' xlink:href='#fk'/><title>References software ( software_id ) + descriptiondescription * varchar -t activeactive -* boolean default 'True' -b is_analysisis_analysis -* boolean default 'False' -b ignore_parent_commandignore_parent_command +<text x='2397' y='1268' text-anchor='end' class='colType'>t</text> <use id='nn' x='2194' y='1277' xlink:href='#nn'/><a xlink:href='#qiita.software_command_active'><text id='qiita.software_command.active' x='2211' y='1287'>active</text><title>active +* boolean default 'True' +b is_analysisis_analysis +* boolean default 'False' +b ignore_parent_commandignore_parent_command * boolean default false -b post_processing_cmdpost_processing_cmd +<text x='2397' y='1316' text-anchor='end' class='colType'>b</text> <a xlink:href='#qiita.software_command_post_processing_cmd'><text id='qiita.software_command.post_processing_cmd' x='2211' y='1335'>post_processing_cmd</text><title>post_processing_cmd varchar Store information on additional post-processing steps for merged BIOMs, if any. -t +t - - - -software_publicationTable qiita.software_publication - idx_software_publication ( software_id ) Pk idx_software_publication_0 ( software_id, publication_doi ) software_idsoftware_id +<rect class='entity' style='stroke:none;' x='1920' y='776' width='160' height='80' rx='8' ry='8' /> +<path d='M 1920 804 L 1920 784 Q 1920 776 1928 776 L 2072 776 Q 2080 776 2080 784 L 2080 804 L1920 804 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1920' y='776' width='160' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.software_publication'><text x='1929' y='795' >software_publication</text><title>Table qiita.software_publication + idx_software_publication ( software_id ) Pk idx_software_publication_0 ( software_id, publication_doi ) software_idsoftware_id * bigint -References software ( software_id ) - idx_software_publication ( publication_doi ) Pk idx_software_publication_0 ( software_id, publication_doi ) publication_doipublication_doi +<a xlink:href='#qiita.software_publication.software_id'><use id='fk' x='2068' y='812' xlink:href='#fk'/><title>References software ( software_id ) + idx_software_publication ( publication_doi ) Pk idx_software_publication_0 ( software_id, publication_doi ) publication_doipublication_doi * varchar -References publication ( publication_doi -> doi ) +References publication ( publication_doi -> doi ) - - - -software_typeTable qiita.software_type - Pk pk_software_type ( software_type_id ) software_type_idsoftware_type_id +<rect class='entity' style='stroke:none;' x='2640' y='904' width='160' height='96' rx='8' ry='8' /> +<path d='M 2640 932 L 2640 912 Q 2640 904 2648 904 L 2792 904 Q 2800 904 2800 912 L 2800 932 L2640 932 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2640' y='904' width='160' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.software_type'><text x='2671' y='923' >software_type</text><title>Table qiita.software_type + Pk pk_software_type ( software_type_id ) software_type_idsoftware_type_id * bigserial -Referred by software ( software_type_id ) - software_typesoftware_type +<a xlink:href='#qiita.software_type.software_type_id'><use id='ref' x='2788' y='940' xlink:href='#ref'/><title>Referred by software ( software_type_id ) + software_typesoftware_type * varchar -t descriptiondescription +<text x='2797' y='964' text-anchor='end' class='colType'>t</text> <use id='nn' x='2642' y='973' xlink:href='#nn'/><a xlink:href='#qiita.software_type_description'><text id='qiita.software_type.description' x='2659' y='983'>description</text><title>description * varchar -t +t - - - -stats_dailyTable qiita.stats_daily +<rect class='entity' style='stroke:none;' x='2464' y='392' width='144' height='80' rx='8' ry='8' /> +<path d='M 2464 420 L 2464 400 Q 2464 392 2472 392 L 2600 392 Q 2608 392 2608 400 L 2608 420 L2464 420 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2464' y='392' width='144' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.stats_daily'><text x='2498' y='411' >stats_daily</text><title>Table qiita.stats_daily stores the daily stats - statsstats + <use id='nn' x='2466' y='429' xlink:href='#nn'/><a xlink:href='#qiita.stats_daily_stats'><text id='qiita.stats_daily.stats' x='2483' y='439'>stats</text><title>stats * varchar -t stats_timestampstats_timestamp +<text x='2605' y='436' text-anchor='end' class='colType'>t</text> <use id='nn' x='2466' y='445' xlink:href='#nn'/><a xlink:href='#qiita.stats_daily_stats_timestamp'><text id='qiita.stats_daily.stats_timestamp' x='2483' y='455'>stats_timestamp</text><title>stats_timestamp * timestamp -d +d - - - -studyTable qiita.study - Pk pk_study ( study_id ) study_idstudy_id +<rect class='entity' style='stroke:none;' x='1776' y='200' width='208' height='400' rx='8' ry='8' /> +<path d='M 1776 228 L 1776 208 Q 1776 200 1784 200 L 1976 200 Q 1984 200 1984 208 L 1984 228 L1776 228 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1776' y='200' width='208' height='400' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.study'><text x='1859' y='219' >study</text><title>Table qiita.study + Pk pk_study ( study_id ) study_idstudy_id * bigserial Unique name for study -Referred by investigation_study ( study_id ) -Referred by per_study_tags ( study_id ) -Referred by sample_template_filepath ( study_id ) -Referred by study_artifact ( study_id ) -Referred by study_environmental_package ( study_id ) -Referred by study_portal ( study_id ) -Referred by study_prep_template ( study_id ) -Referred by study_publication ( study_id ) -Referred by study_sample ( study_id ) +<a xlink:href='#qiita.study.study_id'><use id='ref' x='1972' y='236' xlink:href='#ref'/><title>Referred by investigation_study ( study_id ) +Referred by per_study_tags ( study_id ) +Referred by sample_template_filepath ( study_id ) +Referred by study_artifact ( study_id ) +Referred by study_environmental_package ( study_id ) +Referred by study_portal ( study_id ) +Referred by study_prep_template ( study_id ) +Referred by study_publication ( study_id ) +Referred by study_sample ( study_id ) Referred by study_users ( study_id ) - idx_study ( email ) emailemail + <use id='nn' x='1778' y='253' xlink:href='#nn'/><use id='idx' x='1778' y='252' xlink:href='#idx'><title>idx_study ( email ) emailemail * varchar Email of study owner -References qiita_user ( email ) - first_contactfirst_contact +<a xlink:href='#qiita.study.email'><use id='fk' x='1972' y='252' xlink:href='#fk'/><title>References qiita_user ( email ) + first_contactfirst_contact * timestamp default current_timestamp -d fundingfunding +<text x='1981' y='276' text-anchor='end' class='colType'>d</text> <a xlink:href='#qiita.study_funding'><text id='qiita.study.funding' x='1795' y='295'>funding</text><title>funding varchar -t idx_study_4 ( timeseries_type_id ) timeseries_type_idtimeseries_type_id +<text x='1981' y='292' text-anchor='end' class='colType'>t</text> <use id='nn' x='1778' y='301' xlink:href='#nn'/><use id='idx' x='1778' y='300' xlink:href='#idx'><title>idx_study_4 ( timeseries_type_id ) timeseries_type_idtimeseries_type_id * bigint What type of timeseries this study is (or is not) Controlled Vocabulary -References timeseries_type ( timeseries_type_id ) - idx_study_2 ( lab_person_id ) lab_person_idlab_person_id +<a xlink:href='#qiita.study.timeseries_type_id'><use id='fk' x='1972' y='300' xlink:href='#fk'/><title>References timeseries_type ( timeseries_type_id ) + idx_study_2 ( lab_person_id ) lab_person_idlab_person_id bigint -References study_person ( lab_person_id -> study_person_id ) - metadata_completemetadata_complete +<a xlink:href='#qiita.study.lab_person_id'><use id='fk' x='1972' y='316' xlink:href='#fk'/><title>References study_person ( lab_person_id -> study_person_id ) + metadata_completemetadata_complete * boolean -b mixs_compliantmixs_compliant +<text x='1981' y='340' text-anchor='end' class='colType'>b</text> <use id='nn' x='1778' y='349' xlink:href='#nn'/><a xlink:href='#qiita.study_mixs_compliant'><text id='qiita.study.mixs_compliant' x='1795' y='359'>mixs_compliant</text><title>mixs_compliant * boolean -b most_recent_contactmost_recent_contact +<text x='1981' y='356' text-anchor='end' class='colType'>b</text> <a xlink:href='#qiita.study_most_recent_contact'><text id='qiita.study.most_recent_contact' x='1795' y='375'>most_recent_contact</text><title>most_recent_contact timestamp -d idx_study_3 ( principal_investigator_id ) principal_investigator_idprincipal_investigator_id +<text x='1981' y='372' text-anchor='end' class='colType'>d</text> <use id='nn' x='1778' y='381' xlink:href='#nn'/><use id='idx' x='1778' y='380' xlink:href='#idx'><title>idx_study_3 ( principal_investigator_id ) principal_investigator_idprincipal_investigator_id * bigint -References study_person ( principal_investigator_id -> study_person_id ) - reprocessreprocess +<a xlink:href='#qiita.study.principal_investigator_id'><use id='fk' x='1972' y='380' xlink:href='#fk'/><title>References study_person ( principal_investigator_id -> study_person_id ) + reprocessreprocess * boolean -b spatial_seriesspatial_series +<text x='1981' y='404' text-anchor='end' class='colType'>b</text> <a xlink:href='#qiita.study_spatial_series'><text id='qiita.study.spatial_series' x='1795' y='423'>spatial_series</text><title>spatial_series boolean -b Unq unique_study_title ( study_title ) study_titlestudy_title +<text x='1981' y='420' text-anchor='end' class='colType'>b</text> <use id='nn' x='1778' y='429' xlink:href='#nn'/><use id='unq' x='1778' y='428' xlink:href='#unq'><title>Unq unique_study_title ( study_title ) study_titlestudy_title * varchar -t study_aliasstudy_alias +<text x='1981' y='436' text-anchor='end' class='colType'>t</text> <use id='nn' x='1778' y='445' xlink:href='#nn'/><a xlink:href='#qiita.study_study_alias'><text id='qiita.study.study_alias' x='1795' y='455'>study_alias</text><title>study_alias * varchar -t study_descriptionstudy_description +<text x='1981' y='452' text-anchor='end' class='colType'>t</text> <use id='nn' x='1778' y='461' xlink:href='#nn'/><a xlink:href='#qiita.study_study_description'><text id='qiita.study.study_description' x='1795' y='471'>study_description</text><title>study_description * text -t study_abstractstudy_abstract +<text x='1981' y='468' text-anchor='end' class='colType'>t</text> <use id='nn' x='1778' y='477' xlink:href='#nn'/><a xlink:href='#qiita.study_study_abstract'><text id='qiita.study.study_abstract' x='1795' y='487'>study_abstract</text><title>study_abstract * text -t vamps_idvamps_id +<text x='1981' y='484' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.study_vamps_id'><text id='qiita.study.vamps_id' x='1795' y='503'>vamps_id</text><title>vamps_id varchar -t ebi_study_accessionebi_study_accession +<text x='1981' y='500' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.study_ebi_study_accession'><text id='qiita.study.ebi_study_accession' x='1795' y='519'>ebi_study_accession</text><title>ebi_study_accession varchar -t specimen_id_columnspecimen_id_column +<text x='1981' y='516' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.study_specimen_id_column'><text id='qiita.study.specimen_id_column' x='1795' y='535'>specimen_id_column</text><title>specimen_id_column varchar(256) The name of the column that describes the specimen identifiers (such as what is written on the tubes). -t public_raw_downloadpublic_raw_download -boolean default 'false' -b notesnotes +<text x='1981' y='532' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.study_public_raw_download'><text id='qiita.study.public_raw_download' x='1795' y='551'>public_raw_download</text><title>public_raw_download +boolean default 'false' +b notesnotes text -t autoloadedautoloaded +<text x='1981' y='564' text-anchor='end' class='colType'>t</text> <use id='nn' x='1778' y='573' xlink:href='#nn'/><a xlink:href='#qiita.study_autoloaded'><text id='qiita.study.autoloaded' x='1795' y='583'>autoloaded</text><title>autoloaded * boolean default false -b +b - - - -study_artifactTable qiita.study_artifact - Pk idx_study_artifact ( study_id, artifact_id ) idx_study_artifact ( study_id ) study_idstudy_id +<rect class='entity' style='stroke:none;' x='1600' y='712' width='112' height='80' rx='8' ry='8' /> +<path d='M 1600 740 L 1600 720 Q 1600 712 1608 712 L 1704 712 Q 1712 712 1712 720 L 1712 740 L1600 740 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1600' y='712' width='112' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.study_artifact'><text x='1608' y='731' >study_artifact</text><title>Table qiita.study_artifact + Pk idx_study_artifact ( study_id, artifact_id ) idx_study_artifact ( study_id ) study_idstudy_id * bigint -References study ( study_id ) - Pk idx_study_artifact ( study_id, artifact_id ) idx_study_artifact ( artifact_id ) artifact_idartifact_id +<a xlink:href='#qiita.study_artifact.study_id'><use id='fk' x='1700' y='748' xlink:href='#fk'/><title>References study ( study_id ) + Pk idx_study_artifact ( study_id, artifact_id ) idx_study_artifact ( artifact_id ) artifact_idartifact_id * bigint -References artifact ( artifact_id ) +References artifact ( artifact_id ) - - - -study_environmental_packageTable qiita.study_environmental_package +<rect class='entity' style='stroke:none;' x='2176' y='72' width='240' height='80' rx='8' ry='8' /> +<path d='M 2176 100 L 2176 80 Q 2176 72 2184 72 L 2408 72 Q 2416 72 2416 80 L 2416 100 L2176 100 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2176' y='72' width='240' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.study_environmental_package'><text x='2196' y='91' >study_environmental_package</text><title>Table qiita.study_environmental_package Holds the 1 to many relationship between the study and the environmental_package - Pk pk_study_environmental_package ( study_id, environmental_package_name ) idx_study_environmental_package ( study_id ) study_idstudy_id + <use id='nn' x='2178' y='109' xlink:href='#nn'/><use id='pk' x='2178' y='108' xlink:href='#pk'><title>Pk pk_study_environmental_package ( study_id, environmental_package_name ) idx_study_environmental_package ( study_id ) study_idstudy_id * bigint -References study ( study_id ) - Pk pk_study_environmental_package ( study_id, environmental_package_name ) idx_study_environmental_package_0 ( environmental_package_name ) environmental_package_nameenvironmental_package_name +<a xlink:href='#qiita.study_environmental_package.study_id'><use id='fk' x='2404' y='108' xlink:href='#fk'/><title>References study ( study_id ) + Pk pk_study_environmental_package ( study_id, environmental_package_name ) idx_study_environmental_package_0 ( environmental_package_name ) environmental_package_nameenvironmental_package_name * varchar -References environmental_package ( environmental_package_name ) +References environmental_package ( environmental_package_name ) - - - -study_personTable qiita.study_person +<rect class='entity' style='stroke:none;' x='2000' y='216' width='144' height='144' rx='8' ry='8' /> +<path d='M 2000 244 L 2000 224 Q 2000 216 2008 216 L 2136 216 Q 2144 216 2144 224 L 2144 244 L2000 244 ' style='fill:url(#tbg_C0D4F3);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2000' y='216' width='144' height='144' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.study_person'><text x='2026' y='235' >study_person</text><title>Table qiita.study_person Contact information for the various people involved in a study - Pk pk_study_person ( study_person_id ) study_person_idstudy_person_id + <use id='nn' x='2002' y='253' xlink:href='#nn'/><use id='pk' x='2002' y='252' xlink:href='#pk'><title>Pk pk_study_person ( study_person_id ) study_person_idstudy_person_id * bigserial -Referred by investigation ( contact_person_id -> study_person_id ) -Referred by study ( lab_person_id -> study_person_id ) +<a xlink:href='#qiita.study_person.study_person_id'><use id='ref' x='2132' y='252' xlink:href='#ref'/><title>Referred by investigation ( contact_person_id -> study_person_id ) +Referred by study ( lab_person_id -> study_person_id ) Referred by study ( principal_investigator_id -> study_person_id ) - Unq idx_study_person ( name, affiliation ) namename + <use id='nn' x='2002' y='269' xlink:href='#nn'/><use id='unq' x='2002' y='268' xlink:href='#unq'><title>Unq idx_study_person ( name, affiliation ) namename * varchar -t emailemail +<text x='2141' y='276' text-anchor='end' class='colType'>t</text> <use id='nn' x='2002' y='285' xlink:href='#nn'/><a xlink:href='#qiita.study_person_email'><text id='qiita.study_person.email' x='2019' y='295'>email</text><title>email * varchar -t Unq idx_study_person ( name, affiliation ) affiliationaffiliation +<text x='2141' y='292' text-anchor='end' class='colType'>t</text> <use id='nn' x='2002' y='301' xlink:href='#nn'/><use id='unq' x='2002' y='300' xlink:href='#unq'><title>Unq idx_study_person ( name, affiliation ) affiliationaffiliation * varchar The institution with which this person is affiliated -t addressaddress +<text x='2141' y='308' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.study_person_address'><text id='qiita.study_person.address' x='2019' y='327'>address</text><title>address varchar(100) -t phonephone +<text x='2141' y='324' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.study_person_phone'><text id='qiita.study_person.phone' x='2019' y='343'>phone</text><title>phone varchar -t +t - - - -study_portalTable qiita.study_portal +<rect class='entity' style='stroke:none;' x='1920' y='72' width='144' height='80' rx='8' ry='8' /> +<path d='M 1920 100 L 1920 80 Q 1920 72 1928 72 L 2056 72 Q 2064 72 2064 80 L 2064 100 L1920 100 ' style='fill:url(#tbg_A8C4EF);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1920' y='72' width='144' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.study_portal'><text x='1948' y='91' >study_portal</text><title>Table qiita.study_portal Controls what studies are visible on what portals - Pk pk_study_portal ( study_id, portal_type_id ) idx_study_portal ( study_id ) study_idstudy_id + <use id='nn' x='1922' y='109' xlink:href='#nn'/><use id='pk' x='1922' y='108' xlink:href='#pk'><title>Pk pk_study_portal ( study_id, portal_type_id ) idx_study_portal ( study_id ) study_idstudy_id * bigint -References study ( study_id ) - Pk pk_study_portal ( study_id, portal_type_id ) idx_study_portal_0 ( portal_type_id ) portal_type_idportal_type_id +<a xlink:href='#qiita.study_portal.study_id'><use id='fk' x='2052' y='108' xlink:href='#fk'/><title>References study ( study_id ) + Pk pk_study_portal ( study_id, portal_type_id ) idx_study_portal_0 ( portal_type_id ) portal_type_idportal_type_id * bigint -References portal_type ( portal_type_id ) +References portal_type ( portal_type_id ) - - - -study_prep_templateTable qiita.study_prep_template +<rect class='entity' style='stroke:none;' x='1536' y='552' width='160' height='80' rx='8' ry='8' /> +<path d='M 1536 580 L 1536 560 Q 1536 552 1544 552 L 1688 552 Q 1696 552 1696 560 L 1696 580 L1536 580 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1536' y='552' width='160' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.study_prep_template'><text x='1544' y='571' >study_prep_template</text><title>Table qiita.study_prep_template links study to its prep templates - Pk idx_study_raw_data ( study_id, prep_template_id ) idx_study_raw_data_0 ( study_id ) study_idstudy_id + <use id='nn' x='1538' y='589' xlink:href='#nn'/><use id='pk' x='1538' y='588' xlink:href='#pk'><title>Pk idx_study_raw_data ( study_id, prep_template_id ) idx_study_raw_data_0 ( study_id ) study_idstudy_id * bigint -References study ( study_id ) - Pk idx_study_raw_data ( study_id, prep_template_id ) idx_study_raw_data_1 ( prep_template_id ) prep_template_idprep_template_id +<a xlink:href='#qiita.study_prep_template.study_id'><use id='fk' x='1684' y='588' xlink:href='#fk'/><title>References study ( study_id ) + Pk idx_study_raw_data ( study_id, prep_template_id ) idx_study_raw_data_1 ( prep_template_id ) prep_template_idprep_template_id * bigint -References prep_template ( prep_template_id ) +References prep_template ( prep_template_id ) - - - -study_publicationTable qiita.study_publication - study_idstudy_id +<rect class='entity' style='stroke:none;' x='1792' y='680' width='128' height='96' rx='8' ry='8' /> +<path d='M 1792 708 L 1792 688 Q 1792 680 1800 680 L 1912 680 Q 1920 680 1920 688 L 1920 708 L1792 708 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1792' y='680' width='128' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.study_publication'><text x='1796' y='699' >study_publication</text><title>Table qiita.study_publication + study_idstudy_id * bigint -References study ( study_id ) - publicationpublication +<a xlink:href='#qiita.study_publication.study_id'><use id='fk' x='1908' y='716' xlink:href='#fk'/><title>References study ( study_id ) + publicationpublication * varchar -t is_doiis_doi +<text x='1917' y='740' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.study_publication_is_doi'><text id='qiita.study_publication.is_doi' x='1811' y='759'>is_doi</text><title>is_doi boolean -b +b - - - -study_sampleTable qiita.study_sample +<rect class='entity' style='stroke:none;' x='1376' y='280' width='192' height='112' rx='8' ry='8' /> +<path d='M 1376 308 L 1376 288 Q 1376 280 1384 280 L 1560 280 Q 1568 280 1568 288 L 1568 308 L1376 308 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1376' y='280' width='192' height='112' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.study_sample'><text x='1425' y='299' >study_sample</text><title>Table qiita.study_sample Required info for each sample. One row is one sample. - Pk idx_required_sample_info_1 ( sample_id ) sample_idsample_id + <use id='nn' x='1378' y='317' xlink:href='#nn'/><use id='pk' x='1378' y='316' xlink:href='#pk'><title>Pk idx_required_sample_info_1 ( sample_id ) sample_idsample_id * varchar -Referred by analysis_sample ( sample_id ) +<a xlink:href='#qiita.study_sample.sample_id'><use id='ref' x='1556' y='316' xlink:href='#ref'/><title>Referred by analysis_sample ( sample_id ) Referred by ebi_run_accession ( sample_id ) - idx_required_sample_info ( study_id ) study_idstudy_id + <use id='nn' x='1378' y='333' xlink:href='#nn'/><use id='idx' x='1378' y='332' xlink:href='#idx'><title>idx_required_sample_info ( study_id ) study_idstudy_id * bigint -References study ( study_id ) - ebi_sample_accessionebi_sample_accession +<a xlink:href='#qiita.study_sample.study_id'><use id='fk' x='1556' y='332' xlink:href='#fk'/><title>References study ( study_id ) + ebi_sample_accessionebi_sample_accession varchar -t biosample_accessionbiosample_accession +<text x='1565' y='356' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.study_sample_biosample_accession'><text id='qiita.study_sample.biosample_accession' x='1395' y='375'>biosample_accession</text><title>biosample_accession varchar -t +t - - - -study_tagsTable qiita.study_tags - Pk pk_study_tags ( study_tag_id ) study_tag_idstudy_tag_id +<rect class='entity' style='stroke:none;' x='2176' y='408' width='128' height='96' rx='8' ry='8' /> +<path d='M 2176 436 L 2176 416 Q 2176 408 2184 408 L 2296 408 Q 2304 408 2304 416 L 2304 436 L2176 436 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2176' y='408' width='128' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.study_tags'><text x='2203' y='427' >study_tags</text><title>Table qiita.study_tags + Pk pk_study_tags ( study_tag_id ) study_tag_idstudy_tag_id * bigserial -Referred by per_study_tags ( study_tag_id ) - Unq idx_study_tags ( study_tag ) study_tagstudy_tag +<a xlink:href='#qiita.study_tags.study_tag_id'><use id='ref' x='2292' y='444' xlink:href='#ref'/><title>Referred by per_study_tags ( study_tag_id ) + Unq idx_study_tags ( study_tag ) study_tagstudy_tag * varchar -t idx_study_tags ( email ) emailemail +<text x='2301' y='468' text-anchor='end' class='colType'>t</text> <use id='nn' x='2178' y='477' xlink:href='#nn'/><use id='idx' x='2178' y='476' xlink:href='#idx'><title>idx_study_tags ( email ) emailemail * varchar -References qiita_user ( email ) +References qiita_user ( email ) - - - -study_usersTable qiita.study_users +<rect class='entity' style='stroke:none;' x='1776' y='88' width='96' height='80' rx='8' ry='8' /> +<path d='M 1776 116 L 1776 96 Q 1776 88 1784 88 L 1864 88 Q 1872 88 1872 96 L 1872 116 L1776 116 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1776' y='88' width='96' height='80' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.study_users'><text x='1783' y='107' >study_users</text><title>Table qiita.study_users Links shared studies to users they are shared with - Pk idx_study_users ( study_id, email ) idx_study_users_0 ( study_id ) study_idstudy_id + <use id='nn' x='1778' y='125' xlink:href='#nn'/><use id='pk' x='1778' y='124' xlink:href='#pk'><title>Pk idx_study_users ( study_id, email ) idx_study_users_0 ( study_id ) study_idstudy_id * bigint -References study ( study_id ) - Pk idx_study_users ( study_id, email ) idx_study_users_1 ( email ) emailemail +<a xlink:href='#qiita.study_users.study_id'><use id='fk' x='1860' y='124' xlink:href='#fk'/><title>References study ( study_id ) + Pk idx_study_users ( study_id, email ) idx_study_users_1 ( email ) emailemail * varchar -References qiita_user ( email ) +References qiita_user ( email ) - - - -termTable qiita.term - Pk pk_term ( term_id ) term_idterm_id +<rect class='entity' style='stroke:none;' x='736' y='1400' width='128' height='224' rx='8' ry='8' /> +<path d='M 736 1428 L 736 1408 Q 736 1400 744 1400 L 856 1400 Q 864 1400 864 1408 L 864 1428 L736 1428 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='736' y='1400' width='128' height='224' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.term'><text x='781' y='1419' >term</text><title>Table qiita.term + Pk pk_term ( term_id ) term_idterm_id * bigserial -# idx_term ( ontology_id ) ontology_idontology_id +<text x='861' y='1444' text-anchor='end' class='colType'>#</text> <use id='nn' x='738' y='1453' xlink:href='#nn'/><use id='idx' x='738' y='1452' xlink:href='#idx'><title>idx_term ( ontology_id ) ontology_idontology_id * bigint -References ontology ( ontology_id ) - old_term_idold_term_id +<a xlink:href='#qiita.term.ontology_id'><use id='fk' x='852' y='1452' xlink:href='#fk'/><title>References ontology ( ontology_id ) + old_term_idold_term_id bigint default NULL Identifier used in the old system, we are keeping this for consistency -# termterm +<text x='861' y='1476' text-anchor='end' class='colType'>#</text> <use id='nn' x='738' y='1485' xlink:href='#nn'/><a xlink:href='#qiita.term_term'><text id='qiita.term.term' x='755' y='1495'>term</text><title>term * varchar -t identifieridentifier +<text x='861' y='1492' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.term_identifier'><text id='qiita.term.identifier' x='755' y='1511'>identifier</text><title>identifier varchar -t definitiondefinition +<text x='861' y='1508' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.term_definition'><text id='qiita.term.definition' x='755' y='1527'>definition</text><title>definition varchar -t namespacenamespace +<text x='861' y='1524' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.term_namespace'><text id='qiita.term.namespace' x='755' y='1543'>namespace</text><title>namespace varchar -t is_obsoleteis_obsolete -boolean default 'false' -b is_root_termis_root_term +<text x='861' y='1540' text-anchor='end' class='colType'>t</text> <a xlink:href='#qiita.term_is_obsolete'><text id='qiita.term.is_obsolete' x='755' y='1559'>is_obsolete</text><title>is_obsolete +boolean default 'false' +b is_root_termis_root_term boolean -b is_leafis_leaf +<text x='861' y='1572' text-anchor='end' class='colType'>b</text> <a xlink:href='#qiita.term_is_leaf'><text id='qiita.term.is_leaf' x='755' y='1591'>is_leaf</text><title>is_leaf boolean -b user_defineduser_defined +<text x='861' y='1588' text-anchor='end' class='colType'>b</text> <use id='nn' x='738' y='1597' xlink:href='#nn'/><a xlink:href='#qiita.term_user_defined'><text id='qiita.term.user_defined' x='755' y='1607'>user_defined</text><title>user_defined * boolean default False Whether or not this term was defined by a user -b +b - - - -timeseries_typeTable qiita.timeseries_type - Pk pk_timeseries_type ( timeseries_type_id ) timeseries_type_idtimeseries_type_id +<rect class='entity' style='stroke:none;' x='2000' y='488' width='160' height='96' rx='8' ry='8' /> +<path d='M 2000 516 L 2000 496 Q 2000 488 2008 488 L 2152 488 Q 2160 488 2160 496 L 2160 516 L2000 516 ' style='fill:url(#tbg_C0D4F3);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='2000' y='488' width='160' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.timeseries_type'><text x='2026' y='507' >timeseries_type</text><title>Table qiita.timeseries_type + Pk pk_timeseries_type ( timeseries_type_id ) timeseries_type_idtimeseries_type_id * bigserial -Referred by study ( timeseries_type_id ) - Unq idx_timeseries_type ( timeseries_type, intervention_type ) timeseries_typetimeseries_type +<a xlink:href='#qiita.timeseries_type.timeseries_type_id'><use id='ref' x='2148' y='524' xlink:href='#ref'/><title>Referred by study ( timeseries_type_id ) + Unq idx_timeseries_type ( timeseries_type, intervention_type ) timeseries_typetimeseries_type * varchar -t Unq idx_timeseries_type ( timeseries_type, intervention_type ) intervention_typeintervention_type -* varchar default 'None' -t +t Unq idx_timeseries_type ( timeseries_type, intervention_type ) intervention_typeintervention_type +* varchar default 'None' +t - - - -user_levelTable qiita.user_level +<rect class='entity' style='stroke:none;' x='560' y='264' width='128' height='96' rx='8' ry='8' /> +<path d='M 560 292 L 560 272 Q 560 264 568 264 L 680 264 Q 688 264 688 272 L 688 292 L560 292 ' style='fill:url(#tbg_D0DEF5);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='560' y='264' width='128' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.user_level'><text x='588' y='283' >user_level</text><title>Table qiita.user_level Holds available user levels - Pk pk_user_level ( user_level_id ) user_level_iduser_level_id + <use id='nn' x='562' y='301' xlink:href='#nn'/><use id='pk' x='562' y='300' xlink:href='#pk'><title>Pk pk_user_level ( user_level_id ) user_level_iduser_level_id * serial -Referred by qiita_user ( user_level_id ) - Unq idx_user_level ( name ) namename +<a xlink:href='#qiita.user_level.user_level_id'><use id='ref' x='676' y='300' xlink:href='#ref'/><title>Referred by qiita_user ( user_level_id ) + Unq idx_user_level ( name ) namename * varchar One of the user levels (admin, user, guest, etc) -t descriptiondescription +<text x='685' y='324' text-anchor='end' class='colType'>t</text> <use id='nn' x='562' y='333' xlink:href='#nn'/><a xlink:href='#qiita.user_level_description'><text id='qiita.user_level.description' x='579' y='343'>description</text><title>description * text -t +t - - - -visibilityTable qiita.visibility - Pk pk_visibility ( visibility_id ) visibility_idvisibility_id +<rect class='entity' style='stroke:none;' x='1040' y='1064' width='176' height='96' rx='8' ry='8' /> +<path d='M 1040 1092 L 1040 1072 Q 1040 1064 1048 1064 L 1208 1064 Q 1216 1064 1216 1072 L 1216 1092 L1040 1092 ' style='fill:url(#tbg_B2CDF7);stroke:1;stroke-opacity:0.1;' /> +<rect class='entity' x='1040' y='1064' width='176' height='96' rx='8' ry='8' style='fill:none;stroke:#27282C'/> +<a xlink:href='#qiita.visibility'><text x='1097' y='1083' >visibility</text><title>Table qiita.visibility + Pk pk_visibility ( visibility_id ) visibility_idvisibility_id * bigserial -Referred by artifact ( visibility_id ) - Unq idx_visibility ( visibility ) visibilityvisibility +<a xlink:href='#qiita.visibility.visibility_id'><use id='ref' x='1204' y='1100' xlink:href='#ref'/><title>Referred by artifact ( visibility_id ) + Unq idx_visibility ( visibility ) visibilityvisibility * varchar -t visibility_descriptionvisibility_description +<text x='1213' y='1124' text-anchor='end' class='colType'>t</text> <use id='nn' x='1042' y='1133' xlink:href='#nn'/><a xlink:href='#qiita.visibility_visibility_description'><text id='qiita.visibility.visibility_description' x='1059' y='1143'>visibility_description</text><title>visibility_description * varchar -t +t


-
Table analysis
+
Table analysis

Holds analysis information

@@ -2647,7 +2611,7 @@


-
Table analysis_filepath
+
Table analysis_filepath

Stores link between analysis and the data file used for the analysis.

@@ -2709,7 +2673,7 @@


-
Table analysis_portal
+
Table analysis_portal

Controls what analyses are visible on what portals

@@ -2752,7 +2716,7 @@


-
Table analysis_sample
+
Table analysis_sample
@@ -2803,7 +2767,7 @@
IdxField NameData Type


-
Table analysis_users
+
Table analysis_users

Links analyses to the users they are shared with

@@ -2850,7 +2814,7 @@


-
Table archive_feature_value
+
Table archive_feature_value
@@ -2887,7 +2851,7 @@
IdxField NameData Type


-
Table archive_merging_scheme
+
Table archive_merging_scheme
@@ -2911,7 +2875,7 @@
IdxField NameData Type


-
Table artifact
+
Table artifact

Represents data in the system

@@ -3018,7 +2982,7 @@


-
Table artifact_filepath
+
Table artifact_filepath
@@ -3057,7 +3021,7 @@
IdxField NameData Type


-
Table artifact_output_processing_job
+
Table artifact_output_processing_job
@@ -3105,7 +3069,7 @@
IdxField NameData Type


-
Table artifact_processing_job
+
Table artifact_processing_job
@@ -3144,7 +3108,7 @@
IdxField NameData Type


-
Table artifact_type
+
Table artifact_type

Type of artifact

@@ -3200,7 +3164,7 @@


-
Table artifact_type_filepath_type
+
Table artifact_type_filepath_type
@@ -3244,7 +3208,7 @@
IdxField NameData Type


-
Table checksum_algorithm
+
Table checksum_algorithm
@@ -3271,7 +3235,7 @@
IdxField NameData Type


-
Table column_controlled_vocabularies
+
Table column_controlled_vocabularies

Table relates a column with a controlled vocabulary.

@@ -3318,7 +3282,7 @@


-
Table column_ontology
+
Table column_ontology

This table relates a column with an ontology.

@@ -3368,7 +3332,7 @@


-
Table command_output
+
Table command_output
@@ -3425,7 +3389,7 @@
IdxField NameData Type


-
Table command_parameter
+
Table command_parameter
@@ -3490,7 +3454,7 @@
IdxField NameData Type


-
Table controlled_vocab
+
Table controlled_vocab
@@ -3514,7 +3478,7 @@
IdxField NameData Type


-
Table controlled_vocab_values
+
Table controlled_vocab_values
@@ -3561,7 +3525,7 @@
IdxField NameData Type


-
Table data_directory
+
Table data_directory
@@ -3600,7 +3564,7 @@
IdxField NameData Type


-
Table data_type
+
Table data_type
@@ -3631,7 +3595,7 @@
IdxField NameData TypeDescription


-
Table default_parameter_set
+
Table default_parameter_set
@@ -3684,7 +3648,7 @@
IdxField NameData TypeDescription


-
Table default_workflow
+
Table default_workflow
@@ -3724,7 +3688,7 @@
IdxField NameData Type


-
Table default_workflow_edge
+
Table default_workflow_edge
@@ -3768,7 +3732,7 @@
IdxField NameData Type


-
Table default_workflow_edge_connections
+
Table default_workflow_edge_connections
@@ -3819,7 +3783,7 @@
IdxField NameData Type


-
Table default_workflow_node
+
Table default_workflow_node
@@ -3875,7 +3839,7 @@
IdxField NameData Type


-
Table ebi_run_accession
+
Table ebi_run_accession
@@ -3919,7 +3883,7 @@
IdxField NameData Type


-
Table environmental_package
+
Table environmental_package
@@ -3946,7 +3910,7 @@
IdxField NameData TypeDescription


-
Table filepath
+
Table filepath
@@ -4014,7 +3978,7 @@
IdxField NameData Type


-
Table filepath_type
+
Table filepath_type
@@ -4041,7 +4005,7 @@
IdxField NameData Type


-
Table investigation
+
Table investigation

Overarching investigation information.An investigation comprises one or more individual studies.

@@ -4091,7 +4055,7 @@


-
Table investigation_study
+
Table investigation_study
@@ -4130,7 +4094,7 @@
IdxField NameData Type


-
Table logging
+
Table logging
@@ -4185,7 +4149,7 @@
IdxField NameData TypeDescription


-
Table message
+
Table message
@@ -4219,7 +4183,7 @@
IdxField NameData Type


-
Table message_user
+
Table message_user
@@ -4271,7 +4235,7 @@
IdxField NameData TypeDescription


-
Table mixs_field_description
+
Table mixs_field_description
@@ -4315,7 +4279,7 @@
IdxField NameData Type


-
Table oauth_identifiers
+
Table oauth_identifiers
@@ -4339,7 +4303,7 @@
IdxField NameData Type


-
Table oauth_software
+
Table oauth_software
@@ -4378,7 +4342,7 @@
IdxField NameData Type


-
Table ontology
+
Table ontology
@@ -4435,7 +4399,7 @@
IdxField NameData Type


-
Table parameter_artifact_type
+
Table parameter_artifact_type
@@ -4474,7 +4438,7 @@
IdxField NameData Type


-
Table parent_artifact
+
Table parent_artifact
@@ -4513,7 +4477,7 @@
IdxField NameData Type


-
Table parent_processing_job
+
Table parent_processing_job
@@ -4552,7 +4516,7 @@
IdxField NameData Type


-
Table per_study_tags
+
Table per_study_tags
@@ -4591,7 +4555,7 @@
IdxField NameData Type


-
Table portal_type
+
Table portal_type

What portals are available to show a study in

@@ -4625,7 +4589,7 @@


-
Table prep_template
+
Table prep_template
@@ -4667,22 +4631,22 @@ - + - + - - + + - + - - + + @@ -4713,7 +4677,7 @@
IdxField NameData TypeDescription
varchar DEFAULT 'Default Name'
  deprecated boolean DEFAULT FALSE
 creation_timestamp timestamp DEFAULT CURRENT_TIMESTAMP creation_timestamp timestamp DEFAULT FALSE
 modification_timestamp timestamp DEFAULT CURRENT_TIMESTAMP modification_timestamp timestamp DEFAULT FALSE
Indexes


-
Table prep_template_filepath
+
Table prep_template_filepath
@@ -4752,7 +4716,7 @@
IdxField NameData Type


-
Table prep_template_processing_job
+
Table prep_template_processing_job
@@ -4791,7 +4755,7 @@
IdxField NameData Type


-
Table prep_template_sample
+
Table prep_template_sample
@@ -4842,7 +4806,7 @@
IdxField NameData TypeDescription


-
Table prep_y
+
Table prep_y

Information on how raw data y was prepared (prep template)Linked by y being raw_data_id from raw data table.

@@ -4870,7 +4834,7 @@


-
Table processing_job
+
Table processing_job
@@ -4988,7 +4952,7 @@
IdxField NameData TypeDescription


-
Table processing_job_resource_allocation
+
Table processing_job_resource_allocation
@@ -5022,7 +4986,7 @@
IdxField NameData Type


-
Table processing_job_status
+
Table processing_job_status
@@ -5051,7 +5015,7 @@
IdxField NameData Type


-
Table processing_job_validator
+
Table processing_job_validator
@@ -5095,7 +5059,7 @@
IdxField NameData Type


-
Table processing_job_workflow
+
Table processing_job_workflow
@@ -5132,7 +5096,7 @@
IdxField NameData Type


-
Table processing_job_workflow_root
+
Table processing_job_workflow_root
@@ -5171,7 +5135,7 @@
IdxField NameData Type


-
Table publication
+
Table publication
@@ -5195,7 +5159,7 @@
IdxField NameData Type


-
Table qiita_user
+
Table qiita_user

Holds all user information

@@ -5281,7 +5245,7 @@


-
Table reference
+
Table reference
@@ -5347,7 +5311,7 @@
IdxField NameData Type


-
Table restrictions
+
Table restrictions
@@ -5375,7 +5339,7 @@
IdxField NameData TypeDescription


-
Table sample_template_filepath
+
Table sample_template_filepath
@@ -5414,7 +5378,7 @@
IdxField NameData Type


-
Table sample_x
+
Table sample_x

data for samples in study x (sample template)x is the study_id from study tableMAKE SURE sample_id IS FK TO sample_id IN required_sample_info TABLE

@@ -5442,7 +5406,7 @@


-
Table severity
+
Table severity
@@ -5469,7 +5433,7 @@
IdxField NameData Type


-
Table software
+
Table software
@@ -5536,7 +5500,7 @@
IdxField NameData Type


-
Table software_artifact_type
+
Table software_artifact_type

In case that the software is of type "type plugin", it holds the artifact types that such software can validate and generate the summary.

@@ -5583,7 +5547,7 @@


-
Table software_command
+
Table software_command
@@ -5656,7 +5620,7 @@
IdxField NameData TypeDescription


-
Table software_publication
+
Table software_publication
@@ -5695,7 +5659,7 @@
IdxField NameData Type


-
Table software_type
+
Table software_type
@@ -5724,7 +5688,7 @@
IdxField NameData Type


-
Table stats_daily
+
Table stats_daily

stores the daily stats

@@ -5747,7 +5711,7 @@


-
Table study
+
Table study
@@ -5935,7 +5899,7 @@
IdxField NameData TypeDescription


-
Table study_artifact
+
Table study_artifact
@@ -5974,7 +5938,7 @@
IdxField NameData Type


-
Table study_environmental_package
+
Table study_environmental_package

Holds the 1 to many relationship between the study and the environmental_package

@@ -6021,7 +5985,7 @@


-
Table study_person
+
Table study_person

Contact information for the various people involved in a study

@@ -6077,7 +6041,7 @@


-
Table study_portal
+
Table study_portal

Controls what studies are visible on what portals

@@ -6124,7 +6088,7 @@


-
Table study_prep_template
+
Table study_prep_template

links study to its prep templates

@@ -6171,7 +6135,7 @@


-
Table study_publication
+
Table study_publication
@@ -6201,7 +6165,7 @@
IdxField NameData Type


-
Table study_sample
+
Table study_sample

Required info for each sample. One row is one sample.

@@ -6251,7 +6215,7 @@


-
Table study_tags
+
Table study_tags
@@ -6291,7 +6255,7 @@
IdxField NameData Type


-
Table study_users
+
Table study_users

Links shared studies to users they are shared with

@@ -6338,7 +6302,7 @@


-
Table term
+
Table term
@@ -6429,7 +6393,7 @@
IdxField NameData TypeDescription


-
Table timeseries_type
+
Table timeseries_type
@@ -6461,7 +6425,7 @@
IdxField NameData Type


-
Table user_level
+
Table user_level

Holds available user levels

@@ -6499,7 +6463,7 @@


-
Table visibility
+
Table visibility
IdxField NameData Type