Request for the cell types

[JianmeiZhong]

Hi,
I am confused with the corresponding relationships between the cl_FullLineage column listed in metadata_human_cells.tsv and the cell types in Fig.1b and Fig.1e. Can i request the two-columns table for the relationships between barcodes and the cell types used in Fig.1 ? If there's no too much trouble.

Best Regards

[zhisonghe]

Hi, Jiangmei, Sorry for replying late. The cl_FullLineage column is not for panels in Fig1, but for clusters in Extended Data Fig.2. The cell type annotation in Fig.1e, on the other hand, is already shown at the column cl_LineComp. The cell type annotation in Fig1b is not included, because that annotation is based on the constructed pseudo-cells by averaging similar cells from the same samples together, while the metadata table you mentioned is for single cells. The metadata of the pseudo-cells is currently not included in the submitted data. I will let you know after preparing and submitting the metadata table for pseudo-cells later. Best, Zhisong On 9 Dec 2019, at 08:17, JianmeiZhong <notifications@github.com<mailto:notifications@github.com>> wrote: Hi, I am confused with the corresponding relationships between the cl_FullLineage column listed in metadata_human_cells.tsv and the cell types in Fig.1b and Fig.1e. Can i request the two-columns table for the relationships between barcodes and the cell types used in Fig.1 ? If there's no too much trouble. Best Regards — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub<#2>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ABWK6VZMZYPMO34UUTDBLJDQXXWJ3ANCNFSM4JYEOBMQ>.

[JianmeiZhong]

Hi, Zhisong, &nbsp;Thanks for your nice guide sincerely. Best, Jianmei Zhong

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------------------&nbsp;原始邮件&nbsp;------------------ 发件人:&nbsp;"Jeff He"<notifications@github.com&gt;; 发送时间:&nbsp;2019年12月15日(星期天) 下午4:18 收件人:&nbsp;"quadbiolab/primate_cerebral_organoids"<primate_cerebral_organoids@noreply.github.com&gt;; 抄送:&nbsp;"SHIN"<1924548957@qq.com&gt;;"Author"<author@noreply.github.com&gt;; 主题:&nbsp;Re: [quadbiolab/primate_cerebral_organoids] Request for the cell types (#2) Hi, Jiangmei, Sorry for replying late. The cl_FullLineage column is not for panels in Fig1, but for clusters in Extended Data Fig.2. The cell type annotation in Fig.1e, on the other hand, is already shown at the column cl_LineComp. The cell type annotation in Fig1b is not included, because that annotation is based on the constructed pseudo-cells by averaging similar cells from the same samples together, while the metadata table you mentioned is for single cells. The metadata of the pseudo-cells is currently not included in the submitted data. I will let you know after preparing and submitting the metadata table for pseudo-cells later. Best, Zhisong On 9 Dec 2019, at 08:17, JianmeiZhong <notifications@github.com<mailto:notifications@github.com&gt;&gt; wrote: Hi, I am confused with the corresponding relationships between the cl_FullLineage column listed in metadata_human_cells.tsv and the cell types in Fig.1b and Fig.1e. Can i request the two-columns table for the relationships between barcodes and the cell types used in Fig.1 ? If there's no too much trouble. Best Regards — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub<#2;, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ABWK6VZMZYPMO34UUTDBLJDQXXWJ3ANCNFSM4JYEOBMQ&gt;. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe.