diff --git a/.github/workflows/test-smokes.yml b/.github/workflows/test-smokes.yml
index b50359571df..84e601aeb19 100644
--- a/.github/workflows/test-smokes.yml
+++ b/.github/workflows/test-smokes.yml
@@ -276,23 +276,15 @@ jobs:
           # Useful as TinyTeX latest release is checked in run-test.sh
           GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
         run: |
-          $haserror=$false
           foreach ($file in ('${{ inputs.buckets }}' | ConvertFrom-Json)) {
             Write-Host ">>> ./run-tests.ps1 ${file}"
             ./run-tests.ps1 $file
-            $status=$LASTEXITCODE
-            if ($status -eq 1) {
-              Write-Host ">>> Error found in test file"
-              $haserror=$true
-            } else {
-              Write-Host ">>> No error in this test file"
+            if ($LASTEXITCODE -ne 0) {
+              Exit 1
             }
+            Write-Host ">>> No error in this test file"
           }
-          if ($haserror) {
-            Exit 1
-          } else {
-            Write-Host ">>> All tests have passed"
-          }
+          Write-Host ">>> All tests have passed"
         working-directory: tests
         shell: pwsh
 
diff --git a/dev-docs/subtree-extensions.md b/dev-docs/subtree-extensions.md
new file mode 100644
index 00000000000..5ed7f0a03af
--- /dev/null
+++ b/dev-docs/subtree-extensions.md
@@ -0,0 +1,41 @@
+# Subtree extensions
+
+Subtree extensions live in `src/resources/subtree-extensions`.
+
+Each is the complete git repository of a Quarto extension, e.g. the directory tree for the Julia engine looks like
+
+```
+src/resources/extension-subtrees/
+  julia-engine/
+    _extensions/
+      julia-engine/
+        _extension.yml
+        julia-engine.ts
+        ...
+```
+
+The command to add or update a subtree is
+
+```
+quarto dev-call pull-git-subtree subtree-name
+```
+
+Omit _subtree-name_ to add/update all.
+
+The code in `src/command/dev-call/pull-git-subtree/cmd.ts` contains a table of subtree
+
+- `name`
+- `prefix` (subdirectory)
+- `remoteUrl`
+- `remoteBranch`
+
+If the command is successful, it will add two commits, one the squashed changes from the remote repo and one a merge commit.
+
+The commits have subtree status information in the message and metadata, so don't change them.
+
+The commits can't be rebased -- you'll get weird errors indicating it tried to merge changes at the root of the repo.
+
+So you must either
+
+- run the command when ready to merge to main, or
+- remove the commits when rebasing, and run the `dev-call` command again
diff --git a/llm-docs/error-messages.md b/llm-docs/error-messages.md
new file mode 100644
index 00000000000..c3b3922f4f8
--- /dev/null
+++ b/llm-docs/error-messages.md
@@ -0,0 +1,103 @@
+# Writing Error Messages in Quarto
+
+## The Rule
+
+Each `error()`, `warning()`, or `info()` call should be **exactly one line**.
+
+- ✅ End messages with `\n` to add blank lines after
+- ❌ Never start messages with `\n`
+- ❌ Never use empty `error("")` calls
+
+## Why This Matters
+
+Quarto's logging prefixes each call with `ERROR:` / `WARNING:` / `INFO:`. Starting a message with `\n` or using empty calls creates confusing output:
+
+```
+ERROR: Multiple files found
+ERROR:
+Or specify entry point:    ← Empty "ERROR:" line from \n at start
+```
+
+## Adding Blank Lines
+
+To add a blank line between sections, end the **previous** message with `\n`:
+
+### ✅ Good
+
+```typescript
+error("Multiple .ts files found in src/\n");  // \n at END
+error("Specify entry point as argument:");
+error("  quarto call build-ts-extension src/my-engine.ts");
+```
+
+Output:
+```
+ERROR: Multiple .ts files found in src/
+ERROR:
+ERROR: Specify entry point as argument:
+ERROR:   quarto call build-ts-extension src/my-engine.ts
+```
+
+### ❌ Bad
+
+```typescript
+error("Multiple .ts files found in src/");
+error("\nSpecify entry point as argument:");  // \n at START
+error("  quarto call build-ts-extension src/my-engine.ts");
+```
+
+Output:
+```
+ERROR: Multiple .ts files found in src/
+ERROR:
+ERROR: Specify entry point as argument:     ← Blank "ERROR:" line before
+ERROR:   quarto call build-ts-extension src/my-engine.ts
+```
+
+### ❌ Also Bad
+
+```typescript
+error("Multiple .ts files found in src/");
+error("");  // Empty call to add spacing
+error("Specify entry point as argument:");
+```
+
+Output:
+```
+ERROR: Multiple .ts files found in src/
+ERROR:                                      ← Empty "ERROR:" line
+ERROR: Specify entry point as argument:
+```
+
+## Complete Example
+
+Here's a real example from `build-ts-extension` showing proper formatting:
+
+### ✅ Good
+
+```typescript
+error("No src/ directory found.\n");
+error("Create a TypeScript file in src/:");
+error("  mkdir -p src");
+error("  touch src/my-engine.ts\n");
+error("Or specify entry point as argument:");
+error("  quarto call build-ts-extension src/my-engine.ts");
+```
+
+Output:
+```
+ERROR: No src/ directory found.
+ERROR:
+ERROR: Create a TypeScript file in src/:
+ERROR:   mkdir -p src
+ERROR:   touch src/my-engine.ts
+ERROR:
+ERROR: Or specify entry point as argument:
+ERROR:   quarto call build-ts-extension src/my-engine.ts
+```
+
+Notice:
+- Each `error()` call is one complete line
+- Blank lines are created by ending the previous message with `\n`
+- Indentation (with spaces) is preserved within each message
+- Message flow is clear and readable
diff --git a/llm-docs/quarto-api.md b/llm-docs/quarto-api.md
new file mode 100644
index 00000000000..9940224615d
--- /dev/null
+++ b/llm-docs/quarto-api.md
@@ -0,0 +1,188 @@
+# Quarto API and @quarto/types
+
+## Building @quarto/types
+
+To build the @quarto/types package:
+
+```
+cd packages/quarto-types
+npm run build
+```
+
+This runs typecheck and then bundles all type definitions into `dist/index.d.ts`.
+
+---
+
+## Updating the Quarto API
+
+The Quarto API is how external execution engines access Quarto's core functionality. The API exists in two places:
+
+1. **Type definitions** in `packages/quarto-types/` - consumed by external engines (TypeScript)
+2. **Implementation** in `src/core/quarto-api.ts` - used within quarto-cli
+
+### Step-by-step: Adding to the Quarto API
+
+Follow these steps in order when adding new functionality to the API:
+
+#### 1. Update quarto-types type definitions
+
+**Add auxiliary types** (if needed):
+
+- Types belong in `packages/quarto-types/src/`
+- Follow the existing file organization:
+  - `system.ts` - System/process types (ProcessResult, TempContext, etc.)
+  - `console.ts` - Console/UI types (SpinnerOptions, etc.)
+  - `jupyter.ts` - Jupyter-specific types
+  - `check.ts` - Check command types
+  - `execution.ts` - Execution engine types
+  - etc.
+- Create new files if needed for logical grouping
+
+**Export types from index.ts:**
+
+```typescript
+// In packages/quarto-types/src/index.ts
+export type * from "./your-new-file.ts";
+```
+
+**Add to QuartoAPI interface:**
+
+```typescript
+// In packages/quarto-types/src/quarto-api.ts
+
+// 1. Import any new types at the top
+import type { YourNewType } from "./your-file.ts";
+
+// 2. Add to the QuartoAPI interface
+export interface QuartoAPI {
+  // ... existing namespaces
+
+  yourNamespace: {
+    yourMethod: (param: YourNewType) => ReturnType;
+  };
+}
+```
+
+#### 2. Test the type definitions
+
+```bash
+cd packages/quarto-types
+npm run build
+```
+
+This will:
+
+- Run `tsc --noEmit` to typecheck
+- Bundle types into `dist/index.d.ts`
+- Show any type errors
+
+Fix any errors before proceeding.
+
+#### 3. Update the internal QuartoAPI interface
+
+The file `src/core/quarto-api.ts` contains a **duplicate** QuartoAPI interface definition used for the internal implementation. Update it to match:
+
+```typescript
+// In src/core/quarto-api.ts (near top of file)
+export interface QuartoAPI {
+  // ... existing namespaces
+
+  yourNamespace: {
+    yourMethod: (param: YourNewType) => ReturnType;
+  };
+}
+```
+
+**Note:** This interface must match the one in quarto-types, but uses internal types.
+
+#### 4. Wire up the implementation
+
+Still in `src/core/quarto-api.ts`:
+
+**Add imports** (near top):
+
+```typescript
+import { yourMethod } from "./your-module.ts";
+```
+
+**Add to quartoAPI object** (at bottom):
+
+```typescript
+export const quartoAPI: QuartoAPI = {
+  // ... existing namespaces
+
+  yourNamespace: {
+    yourMethod,
+  },
+};
+```
+
+#### 5. Verify with typecheck
+
+Run the quarto typecheck:
+
+```bash
+package/dist/bin/quarto
+```
+
+No output means success! Fix any type errors.
+
+#### 6. Commit with built artifact
+
+**Always commit the built `dist/index.d.ts` file** along with source changes:
+
+```bash
+git add packages/quarto-types/src/your-file.ts \
+        packages/quarto-types/src/index.ts \
+        packages/quarto-types/src/quarto-api.ts \
+        packages/quarto-types/dist/index.d.ts \
+        src/core/quarto-api.ts
+
+git commit -m "Add yourNamespace to Quarto API"
+```
+
+### Using the Quarto API in source files
+
+#### Inside quarto-cli (internal modules)
+
+```typescript
+// Import the quartoAPI instance
+import { quartoAPI as quarto } from "../../core/quarto-api.ts";
+
+// Use it
+const caps = await quarto.jupyter.capabilities();
+await quarto.console.withSpinner({ message: "Working..." }, async () => {
+  // do work
+});
+```
+
+#### External engines
+
+External engines receive the API via their `init()` method:
+
+```typescript
+let quarto: QuartoAPI;
+
+export const myEngineDiscovery: ExecutionEngineDiscovery = {
+  init: (quartoAPI: QuartoAPI) => {
+    quarto = quartoAPI; // Store for later use
+  },
+
+  // ... other methods can now use quarto
+};
+```
+
+#### Removing old imports
+
+When moving functionality to the API, **remove direct imports** from internal modules:
+
+```typescript
+// ❌ OLD - direct import
+import { withSpinner } from "../../core/console.ts";
+
+// ✅ NEW - use API
+import { quartoAPI as quarto } from "../../core/quarto-api.ts";
+const result = await quarto.console.withSpinner(...);
+```
+
+This ensures external engines and internal code use the same interface.
diff --git a/package/src/common/prepare-dist.ts b/package/src/common/prepare-dist.ts
index c10c3a88add..5509318abad 100755
--- a/package/src/common/prepare-dist.ts
+++ b/package/src/common/prepare-dist.ts
@@ -118,6 +118,11 @@ export async function prepareDist(
   supportingFiles(config);
   info("");
 
+  // Update extension-build import map for distribution
+  info("Updating extension-build import map");
+  updateImportMap(config);
+  info("");
+
   // Create the deno bundle
   // const input = join(config.directoryInfo.src, "quarto.ts");
   const output = join(config.directoryInfo.pkgWorking.bin, "quarto.js");
@@ -163,6 +168,20 @@ export async function prepareDist(
     );
   }
 
+  // Copy quarto-types to extension-build directory
+  // Note: deno.json and import-map.json are copied by supportingFiles() and
+  // import-map.json is then updated by updateImportMap() for distribution
+  info("Copying quarto-types.d.ts to extension-build directory");
+  const extensionBuildDir = join(
+    config.directoryInfo.pkgWorking.share,
+    "extension-build",
+  );
+  copySync(
+    join(config.directoryInfo.root, "packages/quarto-types/dist/index.d.ts"),
+    join(extensionBuildDir, "quarto-types.d.ts"),
+    { overwrite: true },
+  );
+
   // Remove the config directory, if present
   info(`Cleaning config`);
   const configDir = join(config.directoryInfo.dist, "config");
@@ -209,6 +228,49 @@ function supportingFiles(config: Configuration) {
   pathsToClean.forEach((path) => Deno.removeSync(path, { recursive: true }));
 }
 
+function updateImportMap(config: Configuration) {
+  // Read the import map that was copied from src/resources/extension-build/
+  const importMapPath = join(
+    config.directoryInfo.pkgWorking.share,
+    "extension-build",
+    "import-map.json",
+  );
+  const importMapContent = JSON.parse(Deno.readTextFileSync(importMapPath));
+
+  // Read the source import map to get current Deno std versions
+  const sourceImportMapPath = join(config.directoryInfo.src, "import_map.json");
+  const sourceImportMap = JSON.parse(Deno.readTextFileSync(sourceImportMapPath));
+  const sourceImports = sourceImportMap.imports as Record<string, string>;
+
+  // Update the import map for distribution:
+  // 1. Change @quarto/types path from dev (../../../packages/...) to dist (./quarto-types.d.ts)
+  // 2. Update all other imports (Deno std versions) from source import map
+  const updatedImports: Record<string, string> = {
+    "@quarto/types": "./quarto-types.d.ts",
+  };
+
+  // Copy all other imports from source, updating versions
+  for (const key in importMapContent.imports) {
+    if (key !== "@quarto/types") {
+      const sourceValue = sourceImports[key];
+      if (!sourceValue) {
+        throw new Error(
+          `Import map key "${key}" not found in source import_map.json`,
+        );
+      }
+      updatedImports[key] = sourceValue;
+    }
+  }
+
+  importMapContent.imports = updatedImports;
+
+  // Write back the updated import map
+  Deno.writeTextFileSync(
+    importMapPath,
+    JSON.stringify(importMapContent, null, 2) + "\n",
+  );
+}
+
 interface Filter {
   // The name of the filter (the LUA file and perhaps the directory)
   name: string;
diff --git a/package/src/quarto-bld b/package/src/quarto-bld
index 6aaf5cd47a4..d8e13bc66c0 100755
--- a/package/src/quarto-bld
+++ b/package/src/quarto-bld
@@ -17,4 +17,5 @@ export DENO_NO_UPDATE_CHECK=1
 
 # TODO: Consider generating a source map or something to get a good stack
 # Create the Deno bundle
-"$QUARTO_DENO" run --no-check --unstable-kv --unstable-ffi --allow-all --v8-flags=--stack-trace-limit=100 --importmap="${SCRIPT_PATH}/../../src/import_map.json" "$SCRIPT_PATH/bld.ts" $@
+# --enable-experimental-regexp-engine is required for /regex/l, https://github.com/quarto-dev/quarto-cli/issues/9737
+"$QUARTO_DENO" run --no-check --unstable-kv --unstable-ffi --allow-all --v8-flags=--enable-experimental-regexp-engine,--stack-trace-limit=100 --importmap="${SCRIPT_PATH}/../../src/import_map.json" "$SCRIPT_PATH/bld.ts" $@
diff --git a/package/src/quarto-bld.cmd b/package/src/quarto-bld.cmd
index f514e9f6214..221125a8be1 100644
--- a/package/src/quarto-bld.cmd
+++ b/package/src/quarto-bld.cmd
@@ -9,4 +9,5 @@ if NOT DEFINED QUARTO_DENO (
 SET "RUST_BACKTRACE=full"
 SET "DENO_NO_UPDATE_CHECK=1"
 
-"%QUARTO_DENO%" run --unstable-kv --unstable-ffi --allow-all --importmap=%~dp0\..\..\src\import_map.json %~dp0\bld.ts %*
+REM --enable-experimental-regexp-engine is required for /regex/l, https://github.com/quarto-dev/quarto-cli/issues/9737
+"%QUARTO_DENO%" run --no-check --unstable-kv --unstable-ffi --allow-all --v8-flags=--enable-experimental-regexp-engine,--stack-trace-limit=100 --importmap=%~dp0\..\..\src\import_map.json %~dp0\bld.ts %*
diff --git a/package/src/util/deno.ts b/package/src/util/deno.ts
index 6a314bfaf37..4bdc6c86392 100644
--- a/package/src/util/deno.ts
+++ b/package/src/util/deno.ts
@@ -54,6 +54,8 @@ export async function compile(
   denoBundleCmd.push("compile");
   denoBundleCmd.push("--unstable-kv");
   denoBundleCmd.push("--unstable-ffi");
+  // --enable-experimental-regexp-engine is required for /regex/l, https://github.com/quarto-dev/quarto-cli/issues/9737
+  denoBundleCmd.push("--v8-flags=--enable-experimental-regexp-engine,--stack-trace-limit=100");
   denoBundleCmd.push(
     "--importmap=" + configuration.importmap,
   );
diff --git a/packages/quarto-types/.gitignore b/packages/quarto-types/.gitignore
new file mode 100644
index 00000000000..d66d8794876
--- /dev/null
+++ b/packages/quarto-types/.gitignore
@@ -0,0 +1,20 @@
+# Dependency directories
+node_modules/
+npm-debug.log
+yarn-error.log
+yarn-debug.log
+
+# Output directories
+
+# TypeScript cache
+*.tsbuildinfo
+
+# IDE files
+.idea/
+.vscode/
+*.swp
+*.swo
+
+# OS specific files
+.DS_Store
+Thumbs.db
diff --git a/packages/quarto-types/LICENSE b/packages/quarto-types/LICENSE
new file mode 100644
index 00000000000..8b2e300a47a
--- /dev/null
+++ b/packages/quarto-types/LICENSE
@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2023 Quarto
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
\ No newline at end of file
diff --git a/packages/quarto-types/README.md b/packages/quarto-types/README.md
new file mode 100644
index 00000000000..a16ca130e89
--- /dev/null
+++ b/packages/quarto-types/README.md
@@ -0,0 +1,100 @@
+# @quarto/types
+
+TypeScript type definitions for developing Quarto execution engines.
+
+## Installation
+
+The goal in a couple of releases is for you to be able to do
+
+```bash
+npm install @quarto/types
+```
+
+But this package is not published yet, because the interfaces are still in flux.
+
+Instead, build the package and copy dist/index.d.ts to types/quarto-types.d.ts in your engine repo.
+
+```bash
+npm run build
+```
+
+## Usage
+
+This package provides TypeScript type definitions for implementing custom execution engines for Quarto.
+
+```typescript
+import { ExecutionEngine, EngineProjectContext } from "@quarto/types";
+
+export const customEngine: ExecutionEngine = {
+  name: "custom",
+  defaultExt: ".qmd",
+
+  // Implement required methods...
+
+  target: (
+    file: string,
+    quiet: boolean | undefined,
+    markdown: MappedString | undefined,
+    project: EngineProjectContext // Using the restricted context interface
+  ) => {
+    // Implementation...
+  },
+};
+```
+
+## Core Interfaces
+
+### ExecutionEngineDiscovery
+
+Interface for implementing a Quarto execution engine discovery, responsible for determining which engine should handle a file and launching engine instances.
+
+### ExecutionEngineInstance
+
+Interface for a launched execution engine that can execute documents within a project context.
+
+### EngineProjectContext
+
+Restricted version of Quarto's ProjectContext that only exposes functionality needed by execution engines.
+
+## Type Simplifications
+
+This package is designed to be a standalone, lightweight type library for external engine development. To maintain this independence, some internal Quarto types are intentionally simplified:
+
+### Simplified types with omitted fields
+
+- **`RenderOptions`**: The internal Quarto version includes a `services: RenderServices` field, which provides access to temp file context, extension context, and notebook context. This field has been omitted as it requires pulling in large portions of Quarto's internal type system. All other fields are included. See [src/command/render/types.ts](https://github.com/quarto-dev/quarto-cli/blob/main/src/command/render/types.ts#L29-L42) for the full type.
+
+### Simplified to `Record<string, unknown>` or index signatures
+
+- **`Format.render`**: The full internal type is `FormatRender` with 100+ lines of specific rendering options including brand configuration and CSS handling. See [src/config/types.ts](https://github.com/quarto-dev/quarto-cli/blob/main/src/config/types.ts#L463-L525).
+
+- **`Format.execute`**: The full internal type is `FormatExecute` with specific execution options. See [src/config/types.ts](https://github.com/quarto-dev/quarto-cli/blob/main/src/config/types.ts#L527-L561).
+
+- **`Format.pandoc`**: The full internal type is `FormatPandoc` with 80+ lines of pandoc-specific options. Simplified to `{ to?: string; [key: string]: unknown }` preserving only the most commonly accessed `to` property. See [src/config/types.ts](https://github.com/quarto-dev/quarto-cli/blob/main/src/config/types.ts#L563-L646).
+
+When accessing properties from these records, use type assertions as needed:
+
+```typescript
+const figFormat = options.format.execute["fig-format"] as string | undefined;
+const keepHidden = options.format.render?.["keep-hidden"] as
+  | boolean
+  | undefined;
+const writer = options.format.pandoc.to; // Type-safe access to 'to'
+const standalone = options.format.pandoc["standalone"] as boolean | undefined;
+```
+
+### Omitted optional functions
+
+The full internal `Format` interface includes several optional functions that are used internally by Quarto but are not needed by external engines:
+
+- **`mergeAdditionalFormats`**: Internal format merging logic
+- **`resolveFormat`**: Format resolution and normalization
+- **`formatExtras`**: Compute format-specific extras (requires `RenderServices` and `ProjectContext`)
+- **`formatPreviewFile`**: Preview file name transformation
+- **`extensions`**: Format-specific extension configuration
+
+These functions require deep integration with Quarto's internal systems and are not exposed to external engines. See [src/config/types.ts](https://github.com/quarto-dev/quarto-cli/blob/main/src/config/types.ts#L420-L456) for the full `Format` interface.
+
+## License
+
+MIT
diff --git a/packages/quarto-types/dist/index.d.ts b/packages/quarto-types/dist/index.d.ts
new file mode 100644
index 00000000000..c8bb296ac1f
--- /dev/null
+++ b/packages/quarto-types/dist/index.d.ts
@@ -0,0 +1,1671 @@
+// Generated by dts-bundle-generator v9.5.1
+
+/**
+ * Core text manipulation types for Quarto
+ */
+/**
+ * Represents a range within a string
+ */
+interface Range$1 {
+	start: number;
+	end: number;
+}
+/**
+ * A string with source mapping information
+ */
+export interface MappedString {
+	/**
+	 * The text content
+	 */
+	readonly value: string;
+	/**
+	 * Optional filename where the content originated
+	 */
+	readonly fileName?: string;
+	/**
+	 * Maps positions in this string back to positions in the original source
+	 * @param index Position in the current string
+	 * @param closest Whether to find the closest mapping if exact is not available
+	 */
+	readonly map: (index: number, closest?: boolean) => StringMapResult;
+}
+/**
+ * Result of mapping a position in a mapped string
+ */
+export type StringMapResult = {
+	/**
+	 * Position in the original source
+	 */
+	index: number;
+	/**
+	 * Reference to the original mapped string
+	 */
+	originalString: MappedString;
+} | undefined;
+/**
+ * String that may be mapped or unmapped
+ */
+export type EitherString = string | MappedString;
+/**
+ * Basic metadata types used across Quarto
+ */
+/**
+ * Generic metadata key-value store
+ */
+export type Metadata = {
+	[key: string]: unknown;
+};
+/**
+ * Valid format identifier keys
+ */
+export type FormatIdentifierKey = "base-format" | "target-format" | "display-name" | "extension-name";
+/**
+ * Format identifier information
+ */
+export type FormatIdentifier = {
+	[K in FormatIdentifierKey]?: string;
+};
+/**
+ * Format language/localization strings
+ */
+export interface FormatLanguage {
+	[key: string]: string | undefined;
+}
+/**
+ * Complete Format type for engine interfaces
+ */
+export interface Format {
+	/**
+	 * Format identifier
+	 */
+	identifier: FormatIdentifier;
+	/**
+	 * Format language/localization strings
+	 */
+	language: FormatLanguage;
+	/**
+	 * Document metadata
+	 */
+	metadata: Metadata;
+	/**
+	 * Format rendering options
+	 */
+	render: Record<string, unknown>;
+	/**
+	 * Format execution options
+	 */
+	execute: Record<string, unknown>;
+	/**
+	 * Format pandoc options
+	 */
+	pandoc: {
+		to?: string;
+		[key: string]: unknown;
+	};
+}
+/**
+ * External engine interfaces for Quarto
+ */
+/**
+ * Represents an external engine specified in a project
+ */
+export interface ExternalEngine {
+	/**
+	 * Path to the engine implementation
+	 */
+	path: string;
+}
+/**
+ * Information about a file being processed
+ */
+export interface FileInformation {
+	/**
+	 * Full markdown content after expanding includes
+	 */
+	fullMarkdown?: MappedString;
+	/**
+	 * Map of file inclusions
+	 */
+	includeMap?: {
+		source: string;
+		target: string;
+	}[];
+	/**
+	 * The launched execution engine for this file
+	 */
+	engine?: ExecutionEngineInstance;
+	/**
+	 * The execution target for this file
+	 */
+	target?: ExecutionTarget;
+	/**
+	 * Document metadata
+	 */
+	metadata?: Metadata;
+}
+/**
+ * A restricted version of ProjectContext that only exposes
+ * functionality needed by execution engines.
+ */
+export interface EngineProjectContext {
+	/**
+	 * Base directory of the project
+	 */
+	dir: string;
+	/**
+	 * Flag indicating if project consists of a single file
+	 */
+	isSingleFile: boolean;
+	/**
+	 * Config object containing project configuration
+	 * Used primarily for config?.engines access
+	 */
+	config?: {
+		engines?: (string | ExternalEngine)[];
+		project?: {
+			outputDir?: string;
+		};
+	};
+	/**
+	 * For file information cache management
+	 * Used for the transient notebook tracking in Jupyter
+	 */
+	fileInformationCache: Map<string, FileInformation>;
+	/**
+	 * Get the output directory for the project
+	 *
+	 * @returns Path to output directory
+	 */
+	getOutputDirectory: () => string;
+	/**
+	 * Resolves full markdown content for a file, including expanding includes
+	 *
+	 * @param engine - The execution engine
+	 * @param file - Path to the file
+	 * @param markdown - Optional existing markdown content
+	 * @param force - Whether to force re-resolution even if cached
+	 * @returns Promise resolving to mapped markdown string
+	 */
+	resolveFullMarkdownForFile: (engine: ExecutionEngineInstance | undefined, file: string, markdown?: MappedString, force?: boolean) => Promise<MappedString>;
+}
+/**
+ * Minimal type definitions for CLI commands
+ */
+export interface Command {
+	command(name: string, description?: string): Command;
+	description(description: string): Command;
+	action(fn: (...args: any[]) => void | Promise<void>): Command;
+	arguments(args: string): Command;
+	option(flags: string, description: string, options?: any): Command;
+}
+/**
+ * Cell type from breaking Quarto markdown
+ */
+export interface QuartoMdCell {
+	id?: string;
+	cell_type: {
+		language: string;
+	} | "markdown" | "raw";
+	options?: Record<string, unknown>;
+	source: MappedString;
+	sourceVerbatim: MappedString;
+	sourceWithYaml?: MappedString;
+	sourceOffset: number;
+	sourceStartLine: number;
+	cellStartLine: number;
+}
+/**
+ * Result from breaking Quarto markdown
+ */
+export interface QuartoMdChunks {
+	cells: QuartoMdCell[];
+}
+/**
+ * A partitioned markdown document
+ */
+export interface PartitionedMarkdown {
+	/** YAML frontmatter as parsed metadata */
+	yaml?: Metadata;
+	/** Text of the first heading */
+	headingText?: string;
+	/** Attributes of the first heading */
+	headingAttr?: {
+		id: string;
+		classes: string[];
+		keyvalue: Array<[
+			string,
+			string
+		]>;
+	};
+	/** Whether the document contains references */
+	containsRefs: boolean;
+	/** Complete markdown content */
+	markdown: string;
+	/** Markdown without YAML frontmatter */
+	srcMarkdownNoYaml: string;
+}
+/**
+ * Pandoc types for Quarto
+ */
+/**
+ * Valid Pandoc include locations
+ */
+export type PandocIncludeLocation = "include-in-header" | "include-before-body" | "include-after-body";
+/**
+ * Pandoc includes for headers, body, etc.
+ * Mapped type that allows any of the valid include locations
+ */
+export type PandocIncludes = {
+	[K in PandocIncludeLocation]?: string[];
+};
+/**
+ * Options for execution
+ */
+export interface ExecuteOptions {
+	/** The execution target */
+	target: ExecutionTarget;
+	/** Format to render to */
+	format: Format;
+	/** Directory for resources */
+	resourceDir: string;
+	/** Directory for temporary files */
+	tempDir: string;
+	/** Whether to include dependencies */
+	dependencies: boolean;
+	/** Project directory if applicable */
+	projectDir?: string;
+	/** Library directory */
+	libDir?: string;
+	/** Current working directory */
+	cwd: string;
+	/** Parameters passed to document */
+	params?: {
+		[key: string]: unknown;
+	};
+	/** Whether to suppress output */
+	quiet?: boolean;
+	/** Whether execution is for preview server */
+	previewServer?: boolean;
+	/** List of languages handled by cell language handlers */
+	handledLanguages: string[];
+	/** Project context */
+	project: EngineProjectContext;
+}
+/**
+ * Result of execution
+ */
+export interface ExecuteResult {
+	/** Resulting markdown content */
+	markdown: string;
+	/** Supporting files */
+	supporting: string[];
+	/** Filter scripts */
+	filters: string[];
+	/** Updated metadata */
+	metadata?: Metadata;
+	/** Pandoc options */
+	pandoc?: Record<string, unknown>;
+	/** Pandoc includes */
+	includes?: PandocIncludes;
+	/** Engine name */
+	engine?: string;
+	/** Engine-specific dependencies */
+	engineDependencies?: Record<string, Array<unknown>>;
+	/** Content to preserve during processing */
+	preserve?: Record<string, string>;
+	/** Whether post-processing is required */
+	postProcess?: boolean;
+	/** Additional resource files */
+	resourceFiles?: string[];
+}
+/**
+ * Options for retrieving dependencies
+ */
+export interface DependenciesOptions {
+	/** The execution target */
+	target: ExecutionTarget;
+	/** Format to render to */
+	format: Format;
+	/** Output file path */
+	output: string;
+	/** Directory for resources */
+	resourceDir: string;
+	/** Directory for temporary files */
+	tempDir: string;
+	/** Project directory if applicable */
+	projectDir?: string;
+	/** Library directory */
+	libDir?: string;
+	/** Dependencies to include */
+	dependencies?: Array<unknown>;
+	/** Whether to suppress output */
+	quiet?: boolean;
+}
+/**
+ * Result of retrieving dependencies
+ */
+export interface DependenciesResult {
+	/** Pandoc includes */
+	includes: PandocIncludes;
+}
+/**
+ * Options for post-processing
+ */
+export interface PostProcessOptions {
+	/** The execution engine */
+	engine: ExecutionEngineInstance;
+	/** The execution target */
+	target: ExecutionTarget;
+	/** Format to render to */
+	format: Format;
+	/** Output file path */
+	output: string;
+	/** Directory for temporary files */
+	tempDir: string;
+	/** Project directory if applicable */
+	projectDir?: string;
+	/** Content to preserve during processing */
+	preserve?: Record<string, string>;
+	/** Whether to suppress output */
+	quiet?: boolean;
+}
+/**
+ * Options for running the engine
+ */
+export interface RunOptions {
+	/** Input file path */
+	input: string;
+	/** Whether to render */
+	render: boolean;
+	/** Whether to open in browser */
+	browser: boolean;
+	/** Directory for temporary files */
+	tempDir: string;
+	/** Whether to reload */
+	reload?: boolean;
+	/** Target format */
+	format?: string;
+	/** Project directory if applicable */
+	projectDir?: string;
+	/** Port for server */
+	port?: number;
+	/** Host for server */
+	host?: string;
+	/** Whether to suppress output */
+	quiet?: boolean;
+	/** Callback when ready */
+	onReady?: () => Promise<void>;
+}
+/**
+ * Jupyter notebook kernelspec
+ */
+export interface JupyterKernelspec {
+	name: string;
+	language: string;
+	display_name: string;
+	path?: string;
+}
+/**
+ * Jupyter language info
+ */
+export type JupyterLanguageInfo = {
+	name: string;
+	codemirror_mode?: string | Record<string, unknown>;
+	file_extension?: string;
+	mimetype?: string;
+	pygments_lexer?: string;
+};
+/**
+ * Jupyter notebook cell metadata
+ */
+export interface JupyterCellMetadata {
+	[key: string]: unknown;
+}
+/**
+ * Jupyter notebook output
+ */
+export interface JupyterOutput {
+	output_type: string;
+	metadata?: {
+		[mimetype: string]: Record<string, unknown>;
+	};
+	execution_count?: number;
+	[key: string]: unknown;
+}
+/**
+ * Jupyter output stream
+ */
+export interface JupyterOutputStream extends JupyterOutput {
+	name: "stdout" | "stderr";
+	text: string[] | string;
+}
+/**
+ * Jupyter output display data
+ */
+export interface JupyterOutputDisplayData extends JupyterOutput {
+	data: {
+		[mimeType: string]: unknown;
+	};
+	metadata: {
+		[mimeType: string]: Record<string, unknown>;
+	};
+	noCaption?: boolean;
+}
+/**
+ * Jupyter output figure options
+ */
+export interface JupyterOutputFigureOptions {
+	[key: string]: unknown;
+}
+/**
+ * Jupyter cell options
+ */
+export interface JupyterCellOptions extends JupyterOutputFigureOptions {
+	[key: string]: unknown;
+}
+/**
+ * Jupyter cell with options
+ */
+export interface JupyterCellWithOptions extends JupyterCell {
+	id: string;
+	options: JupyterCellOptions;
+	optionsSource: string[];
+}
+/**
+ * Jupyter notebook cell
+ */
+export interface JupyterCell {
+	cell_type: "markdown" | "code" | "raw";
+	metadata: JupyterCellMetadata;
+	source: string | string[];
+	id?: string;
+	execution_count?: number | null;
+	outputs?: JupyterOutput[];
+	attachments?: {
+		[filename: string]: {
+			[mimetype: string]: string | string[];
+		};
+	};
+}
+/**
+ * Jupyter user expression
+ */
+export interface JupyterUserExpression {
+	expression: string;
+	result: JupyterUserExpressionResult;
+}
+/**
+ * Jupyter user expression result
+ */
+export interface JupyterUserExpressionResult extends JupyterCellOutputData {
+	metadata: Metadata;
+	status: string;
+}
+/**
+ * Jupyter cell output data
+ */
+export interface JupyterCellOutputData {
+	data: {
+		[mimeType: string]: unknown;
+	};
+}
+/**
+ * Jupyter cell slideshow
+ */
+export interface JupyterCellSlideshow {
+	[key: string]: string;
+}
+/**
+ * Jupyter notebook structure
+ */
+export interface JupyterNotebook {
+	cells: JupyterCell[];
+	metadata: {
+		kernelspec: JupyterKernelspec;
+		widgets?: Record<string, unknown>;
+		language_info?: JupyterLanguageInfo;
+		[key: string]: unknown;
+	};
+	nbformat: number;
+	nbformat_minor: number;
+}
+/**
+ * Asset paths for Jupyter notebook output
+ */
+export interface JupyterNotebookAssetPaths {
+	base_dir: string;
+	files_dir: string;
+	figures_dir: string;
+	supporting_dir: string;
+}
+/**
+ * Format execution options
+ */
+export interface FormatExecute {
+	[key: string]: unknown;
+}
+/**
+ * Format render options
+ */
+export interface FormatRender {
+	[key: string]: unknown;
+}
+/**
+ * Format pandoc options
+ */
+export interface FormatPandoc {
+	to?: string;
+	[key: string]: unknown;
+}
+/**
+ * Jupyter widget state information
+ */
+export interface JupyterWidgetsState {
+	state: Record<string, unknown>;
+	version_major: number;
+	version_minor: number;
+}
+/**
+ * Widget dependencies from Jupyter notebook
+ */
+export interface JupyterWidgetDependencies {
+	jsWidgets: boolean;
+	jupyterWidgets: boolean;
+	htmlLibraries: string[];
+	widgetsState?: JupyterWidgetsState;
+}
+/**
+ * Jupyter capabilities
+ */
+export interface JupyterCapabilities {
+	versionMajor: number;
+	versionMinor: number;
+	versionPatch: number;
+	versionStr: string;
+	execPrefix: string;
+	executable: string;
+	conda: boolean;
+	pyLauncher: boolean;
+	jupyter_core: string | null;
+	nbformat: string | null;
+	nbclient: string | null;
+	ipykernel: string | null;
+	shiny: string | null;
+}
+/**
+ * Extended Jupyter capabilities
+ */
+export interface JupyterCapabilitiesEx extends JupyterCapabilities {
+	kernels?: JupyterKernelspec[];
+	venv?: boolean;
+}
+/**
+ * Cell output with markdown
+ */
+export interface JupyterCellOutput {
+	id: string;
+	markdown: string;
+	metadata: Record<string, unknown>;
+	options: Record<string, unknown>;
+}
+/**
+ * Options for converting Jupyter notebook to markdown
+ */
+export interface JupyterToMarkdownOptions {
+	executeOptions: ExecuteOptions;
+	language: string;
+	assets: JupyterNotebookAssetPaths;
+	execute: FormatExecute;
+	keepHidden?: boolean;
+	toHtml: boolean;
+	toLatex: boolean;
+	toMarkdown: boolean;
+	toIpynb: boolean;
+	toPresentation: boolean;
+	figFormat?: string;
+	figDpi?: number;
+	figPos?: string;
+	preserveCellMetadata?: boolean;
+	preserveCodeCellYaml?: boolean;
+	outputPrefix?: string;
+	fixups?: string | unknown[];
+}
+/**
+ * Options for converting Quarto markdown to Jupyter notebook
+ */
+export interface QuartoMdToJupyterOptions {
+	title?: string;
+	format?: Format;
+}
+/**
+ * Result of converting Jupyter notebook to markdown
+ */
+export interface JupyterToMarkdownResult {
+	cellOutputs: JupyterCellOutput[];
+	notebookOutputs?: {
+		prefix?: string;
+		suffix?: string;
+	};
+	dependencies?: JupyterWidgetDependencies;
+	htmlPreserve?: Record<string, string>;
+	pandoc?: Record<string, unknown>;
+}
+/**
+ * System and process types for Quarto
+ */
+/**
+ * Process execution result
+ */
+export interface ProcessResult {
+	success: boolean;
+	code: number;
+	stdout?: string;
+	stderr?: string;
+}
+/**
+ * Process execution options
+ */
+export type ExecProcessOptions = {
+	cmd: string;
+	args?: string[];
+	cwd?: string;
+	env?: Record<string, string>;
+	stdout?: "piped" | "inherit" | "null";
+	stderr?: "piped" | "inherit" | "null";
+	stdin?: "piped" | "inherit" | "null";
+};
+/**
+ * Preview server interface
+ */
+export interface PreviewServer {
+	/** Start the server and return the URL to browse to */
+	start: () => Promise<string | undefined>;
+	/** Run the server (blocking) */
+	serve: () => Promise<void>;
+	/** Stop the server */
+	stop: () => Promise<void>;
+}
+/**
+ * Temporary context for managing temporary files and directories
+ */
+export interface TempContext {
+	/** Base directory for temporary files */
+	baseDir: string;
+	/** Create a temporary file from string content and return its path */
+	createFileFromString: (content: string, options?: {
+		suffix?: string;
+		prefix?: string;
+		dir?: string;
+	}) => string;
+	/** Create a temporary file and return its path */
+	createFile: (options?: {
+		suffix?: string;
+		prefix?: string;
+		dir?: string;
+	}) => string;
+	/** Create a temporary directory and return its path */
+	createDir: (options?: {
+		suffix?: string;
+		prefix?: string;
+		dir?: string;
+	}) => string;
+	/** Clean up all temporary resources */
+	cleanup: () => void;
+	/** Register a cleanup handler */
+	onCleanup: (handler: VoidFunction) => void;
+}
+/**
+ * Console and UI types for Quarto
+ */
+/**
+ * Options for displaying a spinner in the console
+ */
+export interface SpinnerOptions {
+	/** Message to display with the spinner (or function that returns message) */
+	message: string | (() => string);
+	/** Message to display when done, or false to hide, or true to keep original message */
+	doneMessage?: string | boolean;
+}
+/**
+ * Options for log messages (info, warning, error)
+ */
+export interface LogMessageOptions {
+	/** Whether to add a trailing newline (default: true) */
+	newline?: boolean;
+	/** Apply bold formatting */
+	bold?: boolean;
+	/** Apply dim/gray formatting */
+	dim?: boolean;
+	/** Number of spaces to indent each line */
+	indent?: number;
+	/** Custom format function applied to each line */
+	format?: (line: string) => string;
+	/** Enable color formatting (default: true) */
+	colorize?: boolean;
+	/** Remove ANSI escape codes from output */
+	stripAnsiCode?: boolean;
+}
+/**
+ * Render services available during check operations
+ * Simplified version containing only what check operations need
+ */
+export interface CheckRenderServices {
+	/** Temporary file management */
+	temp: TempContext;
+	/** Placeholder for extension context (not used by check) */
+	extension?: unknown;
+	/** Placeholder for notebook context (not used by check) */
+	notebook?: unknown;
+}
+/**
+ * Render services with cleanup capability
+ */
+export interface CheckRenderServiceWithLifetime extends CheckRenderServices {
+	/** Cleanup function to release resources */
+	cleanup: () => void;
+	/** Optional lifetime management */
+	lifetime?: unknown;
+}
+/**
+ * Configuration for check command operations
+ * Used by engines implementing checkInstallation()
+ */
+export interface CheckConfiguration {
+	/** Whether to run strict checks */
+	strict: boolean;
+	/** Target being checked (e.g., "jupyter", "knitr", "all") */
+	target: string;
+	/** Optional output file path for JSON results */
+	output: string | undefined;
+	/** Render services (primarily for temp file management) */
+	services: CheckRenderServiceWithLifetime;
+	/** JSON result object (undefined if not outputting JSON) */
+	jsonResult: Record<string, unknown> | undefined;
+}
+/**
+ * Options for test-rendering a document during check operations
+ */
+export interface CheckRenderOptions {
+	/** Markdown content to render */
+	content: string;
+	/** Language identifier (e.g., "python", "r", "julia") */
+	language: string;
+	/** Render services for temp file management */
+	services: CheckRenderServiceWithLifetime;
+}
+/**
+ * Result of a check render operation
+ */
+export interface CheckRenderResult {
+	/** Whether the render succeeded */
+	success: boolean;
+	/** Error if render failed */
+	error?: Error;
+}
+/**
+ * Global Quarto API interface
+ */
+export interface QuartoAPI {
+	/**
+	 * Markdown processing utilities using regex patterns
+	 */
+	markdownRegex: {
+		/**
+		 * Extract and parse YAML frontmatter from markdown
+		 *
+		 * @param markdown - Markdown content with YAML frontmatter
+		 * @returns Parsed metadata object
+		 */
+		extractYaml: (markdown: string) => Metadata;
+		/**
+		 * Split markdown into components (YAML, heading, content)
+		 *
+		 * @param markdown - Markdown content
+		 * @returns Partitioned markdown with yaml, heading, and content sections
+		 */
+		partition: (markdown: string) => PartitionedMarkdown;
+		/**
+		 * Extract programming languages from code blocks
+		 *
+		 * @param markdown - Markdown content to analyze
+		 * @returns Set of language identifiers found in fenced code blocks
+		 */
+		getLanguages: (markdown: string) => Set<string>;
+		/**
+		 * Break Quarto markdown into cells
+		 *
+		 * @param src - Markdown string or MappedString
+		 * @param validate - Whether to validate cells (default: false)
+		 * @param lenient - Whether to use lenient parsing (default: false)
+		 * @returns Promise resolving to chunks with cells
+		 */
+		breakQuartoMd: (src: string | MappedString, validate?: boolean, lenient?: boolean) => Promise<QuartoMdChunks>;
+	};
+	/**
+	 * MappedString utilities for source location tracking
+	 */
+	mappedString: {
+		/**
+		 * Create a mapped string from plain text
+		 *
+		 * @param text - Text content
+		 * @param fileName - Optional filename for source tracking
+		 * @returns MappedString with identity mapping
+		 */
+		fromString: (text: string, fileName?: string) => MappedString;
+		/**
+		 * Read a file and create a mapped string
+		 *
+		 * @param path - Path to the file to read
+		 * @returns MappedString with file content and source information
+		 */
+		fromFile: (path: string) => MappedString;
+		/**
+		 * Normalize newlines while preserving source mapping
+		 *
+		 * @param markdown - MappedString to normalize
+		 * @returns MappedString with \r\n converted to \n
+		 */
+		normalizeNewlines: (markdown: MappedString) => MappedString;
+		/**
+		 * Split a MappedString into lines
+		 *
+		 * @param str - MappedString to split
+		 * @param keepNewLines - Whether to keep newline characters (default: false)
+		 * @returns Array of MappedStrings, one per line
+		 */
+		splitLines: (str: MappedString, keepNewLines?: boolean) => MappedString[];
+		/**
+		 * Convert character offset to line/column coordinates
+		 *
+		 * @param str - MappedString to query
+		 * @param offset - Character offset to convert
+		 * @returns Line and column numbers (1-indexed)
+		 */
+		indexToLineCol: (str: MappedString, offset: number) => {
+			line: number;
+			column: number;
+		};
+	};
+	/**
+	 * Jupyter notebook integration utilities
+	 */
+	jupyter: {
+		/**
+		 * Check if a file is a Jupyter notebook
+		 *
+		 * @param file - File path to check
+		 * @returns True if file is a Jupyter notebook (.ipynb)
+		 */
+		isJupyterNotebook: (file: string) => boolean;
+		/**
+		 * Check if a file is a Jupyter percent script
+		 *
+		 * @param file - File path to check
+		 * @param extensions - Optional array of extensions to check (default: ['.py', '.jl', '.r'])
+		 * @returns True if file is a Jupyter percent script
+		 */
+		isPercentScript: (file: string, extensions?: string[]) => boolean;
+		/**
+		 * List of Jupyter notebook file extensions
+		 */
+		notebookExtensions: string[];
+		/**
+		 * Extract kernelspec from markdown content
+		 *
+		 * @param markdown - Markdown content with YAML frontmatter
+		 * @returns Extracted kernelspec or undefined if not found
+		 */
+		kernelspecFromMarkdown: (markdown: string) => JupyterKernelspec | undefined;
+		/**
+		 * Find a Jupyter kernelspec that supports a given language
+		 *
+		 * @param language - Language to find kernel for (e.g., "python", "julia", "r")
+		 * @returns Promise resolving to matching kernelspec or undefined if not found
+		 */
+		kernelspecForLanguage: (language: string) => Promise<JupyterKernelspec | undefined>;
+		/**
+		 * Convert JSON string to Jupyter notebook
+		 *
+		 * @param nbJson - JSON string containing notebook data
+		 * @returns Parsed Jupyter notebook object
+		 */
+		fromJSON: (nbJson: string) => JupyterNotebook;
+		/**
+		 * Convert a Jupyter notebook to markdown
+		 *
+		 * @param nb - Jupyter notebook to convert
+		 * @param options - Conversion options
+		 * @returns Converted markdown with cell outputs and dependencies
+		 */
+		toMarkdown: (nb: JupyterNotebook, options: JupyterToMarkdownOptions) => Promise<JupyterToMarkdownResult>;
+		/**
+		 * Convert Jupyter notebook file to markdown
+		 *
+		 * @param file - Path to notebook file
+		 * @param format - Optional format to use for conversion
+		 * @returns Markdown content extracted from notebook
+		 */
+		markdownFromNotebookFile: (file: string, format?: Format) => string;
+		/**
+		 * Convert Jupyter notebook JSON to markdown
+		 *
+		 * @param nbJson - Notebook JSON string
+		 * @returns Markdown content extracted from notebook
+		 */
+		markdownFromNotebookJSON: (nbJson: string) => string;
+		/**
+		 * Convert a Jupyter percent script to markdown
+		 *
+		 * @param file - Path to the percent script file
+		 * @returns Converted markdown content
+		 */
+		percentScriptToMarkdown: (file: string) => string;
+		/**
+		 * Convert Quarto markdown to Jupyter notebook
+		 *
+		 * @param markdown - Markdown content with YAML frontmatter
+		 * @param includeIds - Whether to include cell IDs
+		 * @param project - Optional project context for config merging
+		 * @returns Promise resolving to Jupyter notebook generated from markdown
+		 */
+		quartoMdToJupyter: (markdown: string, includeIds: boolean, project?: EngineProjectContext) => Promise<JupyterNotebook>;
+		/**
+		 * Apply filters to a Jupyter notebook
+		 *
+		 * @param nb - Jupyter notebook to filter
+		 * @param filters - Array of filter strings to apply
+		 * @returns Filtered notebook
+		 */
+		notebookFiltered: (nb: JupyterNotebook, filters: string[]) => JupyterNotebook;
+		/**
+		 * Create asset paths for Jupyter notebook output
+		 *
+		 * @param input - Input file path
+		 * @param to - Output format (optional)
+		 * @returns Asset paths for files, figures, and supporting directories
+		 */
+		assets: (input: string, to?: string) => JupyterNotebookAssetPaths;
+		/**
+		 * Generate Pandoc includes for Jupyter widget dependencies
+		 *
+		 * @param deps - Widget dependencies
+		 * @param tempDir - Temporary directory for includes
+		 * @returns Pandoc includes structure
+		 */
+		widgetDependencyIncludes: (deps: JupyterWidgetDependencies, tempDir: string) => PandocIncludes;
+		/**
+		 * Convert result dependencies to Pandoc includes
+		 *
+		 * @param tempDir - Temporary directory for includes
+		 * @param dependencies - Widget dependencies from execution result
+		 * @returns Pandoc includes structure
+		 */
+		resultIncludes: (tempDir: string, dependencies?: JupyterWidgetDependencies) => PandocIncludes;
+		/**
+		 * Extract engine dependencies from result dependencies
+		 *
+		 * @param dependencies - Widget dependencies from execution result
+		 * @returns Array of widget dependencies or undefined
+		 */
+		resultEngineDependencies: (dependencies?: JupyterWidgetDependencies) => Array<JupyterWidgetDependencies> | undefined;
+		/**
+		 * Get Python executable command
+		 *
+		 * @param python - Optional Python executable override
+		 * @returns Promise resolving to array of command line arguments
+		 */
+		pythonExec: (python?: string) => Promise<string[]>;
+		/**
+		 * Get Jupyter capabilities
+		 *
+		 * @param python - Optional Python executable override
+		 * @param jupyter - Optional Jupyter executable override
+		 * @returns Promise resolving to Jupyter capabilities
+		 */
+		capabilities: (python?: string, jupyter?: string) => Promise<JupyterCapabilities>;
+		/**
+		 * Generate formatted capabilities message with version, path, jupyter version, and kernels
+		 *
+		 * @param caps - Jupyter capabilities
+		 * @param indent - Optional indentation string (default: "")
+		 * @returns Promise resolving to formatted capabilities message with indentation
+		 */
+		capabilitiesMessage: (caps: JupyterCapabilities, indent?: string) => Promise<string>;
+		/**
+		 * Generate capabilities with kernels list for JSON output
+		 *
+		 * Enriches capabilities with full kernels array for structured output.
+		 * Used by check command JSON output.
+		 *
+		 * @param caps - Jupyter capabilities
+		 * @returns Promise resolving to capabilities with kernels array
+		 */
+		capabilitiesJson: (caps: JupyterCapabilities) => Promise<JupyterCapabilities & {
+			kernels: JupyterKernelspec[];
+		}>;
+		/**
+		 * Generate Jupyter installation instructions
+		 *
+		 * @param caps - Jupyter capabilities (to determine conda vs pip)
+		 * @param indent - Optional indentation string (default: "")
+		 * @returns Installation message with appropriate package manager
+		 */
+		installationMessage: (caps: JupyterCapabilities, indent?: string) => string;
+		/**
+		 * Check for and generate warning about unactivated Python environments
+		 *
+		 * @param caps - Jupyter capabilities (to check if python is from venv)
+		 * @param indent - Optional indentation string (default: "")
+		 * @returns Warning message if unactivated env found, undefined otherwise
+		 */
+		unactivatedEnvMessage: (caps: JupyterCapabilities, indent?: string) => string | undefined;
+		/**
+		 * Generate Python installation instructions
+		 *
+		 * @param indent - Optional indentation string (default: "")
+		 * @returns Installation message
+		 */
+		pythonInstallationMessage: (indent?: string) => string;
+	};
+	/**
+	 * Format detection utilities
+	 */
+	format: {
+		/**
+		 * Check if format is HTML compatible
+		 *
+		 * @param format - Format to check
+		 * @returns True if format is HTML compatible
+		 */
+		isHtmlCompatible: (format: Format) => boolean;
+		/**
+		 * Check if format is Jupyter notebook output
+		 *
+		 * @param format - Format pandoc options to check
+		 * @returns True if format is ipynb
+		 */
+		isIpynbOutput: (format: FormatPandoc) => boolean;
+		/**
+		 * Check if format is LaTeX output
+		 *
+		 * @param format - Format pandoc options to check
+		 * @returns True if format is LaTeX (pdf, latex, or beamer)
+		 */
+		isLatexOutput: (format: FormatPandoc) => boolean;
+		/**
+		 * Check if format is markdown output
+		 *
+		 * @param format - Format to check
+		 * @param flavors - Optional array of markdown flavors to check
+		 * @returns True if format is markdown
+		 */
+		isMarkdownOutput: (format: Format, flavors?: string[]) => boolean;
+		/**
+		 * Check if format is presentation output
+		 *
+		 * @param format - Format pandoc options to check
+		 * @returns True if format is a presentation format
+		 */
+		isPresentationOutput: (format: FormatPandoc) => boolean;
+		/**
+		 * Check if format is HTML dashboard output
+		 *
+		 * @param format - Optional format string to check
+		 * @returns True if format is a dashboard
+		 */
+		isHtmlDashboardOutput: (format?: string) => boolean;
+		/**
+		 * Check if format is a Shiny server document
+		 *
+		 * @param format - Optional format to check
+		 * @returns True if format has server: shiny
+		 */
+		isServerShiny: (format?: Format) => boolean;
+		/**
+		 * Check if format is a Python Shiny server document with Jupyter engine
+		 *
+		 * @param format - Format to check
+		 * @param engine - Execution engine name
+		 * @returns True if format is server: shiny with jupyter engine
+		 */
+		isServerShinyPython: (format: Format, engine: string | undefined) => boolean;
+	};
+	/**
+	 * Path manipulation utilities
+	 */
+	path: {
+		/**
+		 * Convert path to absolute form with platform-specific handling
+		 *
+		 * Handles URL to file path conversion, makes relative paths absolute,
+		 * normalizes the path, and uppercases Windows drive letters.
+		 *
+		 * @param path - Path string or URL to make absolute
+		 * @returns Absolute, normalized path with Windows-specific fixes
+		 */
+		absolute: (path: string | URL) => string;
+		/**
+		 * Convert path to use forward slashes
+		 *
+		 * @param path - Path with backslashes or forward slashes
+		 * @returns Path with only forward slashes
+		 */
+		toForwardSlashes: (path: string) => string;
+		/**
+		 * Get platform-specific runtime directory for Quarto
+		 *
+		 * Returns the appropriate runtime/state directory based on platform:
+		 * - macOS: ~/Library/Caches/quarto/{subdir}
+		 * - Windows: %LOCALAPPDATA%/quarto/{subdir}
+		 * - Linux: $XDG_RUNTIME_DIR or ~/.local/share/quarto/{subdir}
+		 *
+		 * Automatically creates the directory if it doesn't exist.
+		 *
+		 * @param subdir - Optional subdirectory within the runtime directory
+		 * @returns Absolute path to the runtime directory
+		 */
+		runtime: (subdir?: string) => string;
+		/**
+		 * Get path to a Quarto resource file
+		 *
+		 * Returns the path to bundled resource files in Quarto's share directory.
+		 * Can accept multiple path segments that will be joined.
+		 *
+		 * @param parts - Path segments to join (e.g., "julia", "script.jl")
+		 * @returns Absolute path to the resource file
+		 */
+		resource: (...parts: string[]) => string;
+		/**
+		 * Split a file path into directory and stem (filename without extension)
+		 *
+		 * @param file - File path to split
+		 * @returns Tuple of [directory, filename stem]
+		 */
+		dirAndStem: (file: string) => [
+			string,
+			string
+		];
+		/**
+		 * Check if a file is a Quarto markdown file (.qmd)
+		 *
+		 * @param file - File path to check
+		 * @returns True if file has .qmd extension
+		 */
+		isQmdFile: (file: string) => boolean;
+		/**
+		 * Get the standard supporting files directory name for an input file
+		 *
+		 * Returns the conventional `{stem}_files` directory name where Quarto
+		 * stores supporting resources (images, data files, etc.) for a document.
+		 *
+		 * @param input - Input file path
+		 * @returns Directory name in format `{stem}_files`
+		 * @example
+		 * ```typescript
+		 * inputFilesDir("/path/to/document.qmd") // returns "document_files"
+		 * ```
+		 */
+		inputFilesDir: (input: string) => string;
+		/**
+		 * Get platform-specific user data directory for Quarto
+		 *
+		 * Returns the appropriate data directory based on platform:
+		 * - macOS: ~/Library/Application Support/quarto/{subdir}
+		 * - Windows: %LOCALAPPDATA%/quarto/{subdir} (or %APPDATA% if roaming)
+		 * - Linux: $XDG_DATA_HOME/quarto/{subdir} or ~/.local/share/quarto/{subdir}
+		 *
+		 * Automatically creates the directory if it doesn't exist.
+		 *
+		 * @param subdir - Optional subdirectory within the data directory
+		 * @param roaming - Optional flag for Windows roaming profile (default: false)
+		 * @returns Absolute path to the data directory
+		 */
+		dataDir: (subdir?: string, roaming?: boolean) => string;
+	};
+	/**
+	 * System and environment detection utilities
+	 */
+	system: {
+		/**
+		 * Check if running in an interactive session
+		 *
+		 * Detects if Quarto is running in an interactive environment such as:
+		 * - RStudio IDE
+		 * - VS Code output channel
+		 * - Interactive terminal (TTY)
+		 *
+		 * @returns True if running in an interactive environment
+		 */
+		isInteractiveSession: () => boolean;
+		/**
+		 * Check if running in a CI/CD environment
+		 *
+		 * Detects if Quarto is running in a continuous integration environment by checking
+		 * for common CI environment variables across 40+ CI/CD platforms including:
+		 * - GitHub Actions
+		 * - GitLab CI
+		 * - Jenkins
+		 * - CircleCI
+		 * - Travis CI
+		 * - And many more
+		 *
+		 * @returns True if running in a CI/CD environment
+		 */
+		runningInCI: () => boolean;
+		/**
+		 * Execute an external process
+		 *
+		 * @param options - Process execution options
+		 * @param stdin - Optional stdin content
+		 * @param mergeOutput - Optional output stream merging
+		 * @param stderrFilter - Optional stderr filter function
+		 * @param respectStreams - Optional flag to respect stream separation
+		 * @param timeout - Optional timeout in milliseconds
+		 * @returns Promise resolving to process result
+		 */
+		execProcess: (options: ExecProcessOptions, stdin?: string, mergeOutput?: "stderr>stdout" | "stdout>stderr", stderrFilter?: (output: string) => string, respectStreams?: boolean, timeout?: number) => Promise<ProcessResult>;
+		/**
+		 * Run an external preview server
+		 *
+		 * @param options - Server options including command and ready pattern
+		 * @returns PreviewServer instance for managing the server lifecycle
+		 */
+		runExternalPreviewServer: (options: {
+			cmd: string[];
+			readyPattern: RegExp;
+			env?: Record<string, string>;
+			cwd?: string;
+		}) => PreviewServer;
+		/**
+		 * Register a cleanup handler to run on process exit
+		 *
+		 * @param handler - Function to run on cleanup (can be async)
+		 */
+		onCleanup: (handler: () => void | Promise<void>) => void;
+		/**
+		 * Get global temporary context for managing temporary files and directories
+		 *
+		 * @returns Global TempContext instance
+		 */
+		tempContext: () => TempContext;
+		/**
+		 * Test-render a document for validation during check operations
+		 *
+		 * Creates a temporary file with the provided content, renders it with
+		 * appropriate engine settings, and returns success/failure status.
+		 * Used by checkInstallation implementations to verify engines work.
+		 *
+		 * @param options - Check render options with content and services
+		 * @returns Promise resolving to render result with success status
+		 */
+		checkRender: (options: CheckRenderOptions) => Promise<CheckRenderResult>;
+	};
+	/**
+	 * Text processing utilities
+	 */
+	text: {
+		/**
+		 * Split text into lines
+		 *
+		 * @param text - Text to split
+		 * @returns Array of lines
+		 */
+		lines: (text: string) => string[];
+		/**
+		 * Trim empty lines from array
+		 *
+		 * @param lines - Array of lines
+		 * @param trim - Which empty lines to trim (default: "all")
+		 * @returns Trimmed array of lines
+		 */
+		trimEmptyLines: (lines: string[], trim?: "leading" | "trailing" | "all") => string[];
+		/**
+		 * Restore preserved HTML in post-processing
+		 *
+		 * @param options - Post-processing options including output path and preserve map
+		 */
+		postProcessRestorePreservedHtml: (options: PostProcessOptions) => void;
+		/**
+		 * Convert line/column position to character index
+		 *
+		 * @param text - Text to search in
+		 * @returns Function that converts position to index
+		 */
+		lineColToIndex: (text: string) => (position: {
+			line: number;
+			column: number;
+		}) => number;
+		/**
+		 * Create a handler for executing inline code
+		 *
+		 * @param language - Programming language identifier
+		 * @param exec - Function to execute code expression
+		 * @returns Handler function that processes code strings
+		 */
+		executeInlineCodeHandler: (language: string, exec: (expr: string) => string | undefined) => (code: string) => string;
+		/**
+		 * Convert metadata object to YAML text
+		 *
+		 * @param metadata - Metadata object to convert
+		 * @returns YAML formatted string
+		 */
+		asYamlText: (metadata: Metadata) => string;
+	};
+	/**
+	 * Console and UI utilities
+	 */
+	console: {
+		/**
+		 * Execute an async operation with a spinner displayed in the console
+		 *
+		 * Shows a spinner with a message while the operation runs, then displays
+		 * a completion message when done.
+		 *
+		 * @param options - Spinner display options
+		 * @param fn - Async function to execute
+		 * @returns Promise resolving to the function's return value
+		 */
+		withSpinner: <T>(options: SpinnerOptions, fn: () => Promise<T>) => Promise<T>;
+		/**
+		 * Display a completion message in the console
+		 *
+		 * Shows a message with a checkmark indicator (or equivalent) to indicate
+		 * successful completion of an operation.
+		 *
+		 * @param message - Message to display
+		 */
+		completeMessage: (message: string) => void;
+		/**
+		 * Log an informational message to stderr
+		 *
+		 * Writes an info-level message to stderr using Quarto's custom logging handler.
+		 * Supports formatting options like indentation, bold text, and color control.
+		 *
+		 * @param message - Message to log
+		 * @param options - Optional formatting options
+		 */
+		info: (message: string, options?: LogMessageOptions) => void;
+		/**
+		 * Log a warning message to stderr
+		 *
+		 * Writes a warning-level message to stderr with yellow color and "WARNING:" prefix.
+		 * Uses Quarto's custom logging handler.
+		 *
+		 * @param message - Warning message to log
+		 * @param options - Optional formatting options
+		 */
+		warning: (message: string, options?: LogMessageOptions) => void;
+		/**
+		 * Log an error message to stderr
+		 *
+		 * Writes an error-level message to stderr with bright red color and "ERROR:" prefix.
+		 * Uses Quarto's custom logging handler.
+		 *
+		 * @param message - Error message to log
+		 * @param options - Optional formatting options
+		 */
+		error: (message: string, options?: LogMessageOptions) => void;
+	};
+	/**
+	 * Cryptographic utilities
+	 */
+	crypto: {
+		/**
+		 * Generate MD5 hash of content
+		 *
+		 * @param content - String content to hash
+		 * @returns MD5 hash as hexadecimal string
+		 */
+		md5Hash: (content: string) => string;
+	};
+}
+/**
+ * Global Quarto API object
+ */
+export declare const quartoAPI: QuartoAPI;
+/**
+ * Render flags (extends pandoc flags)
+ */
+export interface RenderFlags {
+	outputDir?: string;
+	siteUrl?: string;
+	executeDir?: string;
+	execute?: boolean;
+	executeCache?: true | false | "refresh";
+	executeDaemon?: number;
+	executeDaemonRestart?: boolean;
+	executeDebug?: boolean;
+	useFreezer?: boolean;
+	metadata?: {
+		[key: string]: unknown;
+	};
+	pandocMetadata?: {
+		[key: string]: unknown;
+	};
+	params?: {
+		[key: string]: unknown;
+	};
+	paramsFile?: string;
+	clean?: boolean;
+	debug?: boolean;
+	quiet?: boolean;
+	version?: string;
+	to?: string;
+	output?: string;
+	[key: string]: unknown;
+}
+/**
+ * Render options (simplified)
+ * Note: The internal Quarto version includes a 'services' field with
+ * RenderServices, which has been omitted as it requires internal dependencies.
+ */
+export interface RenderOptions {
+	flags?: RenderFlags;
+	pandocArgs?: string[];
+	progress?: boolean;
+	useFreezer?: boolean;
+	devServerReload?: boolean;
+	previewServer?: boolean;
+	setProjectDir?: boolean;
+	forceClean?: boolean;
+	echo?: boolean;
+	warning?: boolean;
+	quietPandoc?: boolean;
+}
+/**
+ * Result file from rendering
+ */
+export interface RenderResultFile {
+	/** Input file path */
+	input: string;
+	/** Markdown content */
+	markdown: string;
+	/** Format used for rendering */
+	format: Format;
+	/** Output file path */
+	file: string;
+	/** Whether this is a transient file */
+	isTransient?: boolean;
+	/** Supporting files generated */
+	supporting?: string[];
+	/** Resource files */
+	resourceFiles: string[];
+	/** Whether this is a supplemental file */
+	supplemental?: boolean;
+}
+/**
+ * Execution target (filename and context)
+ */
+export interface ExecutionTarget {
+	/** Original source file */
+	source: string;
+	/** Input file after preprocessing */
+	input: string;
+	/** Markdown content */
+	markdown: MappedString;
+	/** Document metadata */
+	metadata: Metadata;
+	/** Optional target-specific data */
+	data?: unknown;
+}
+/**
+ * Interface for execution engine discovery
+ * Responsible for the static aspects of engine discovery (not requiring project context)
+ */
+export interface ExecutionEngineDiscovery {
+	/**
+	 * Initialize the engine with the Quarto API (optional)
+	 * May be called multiple times but always with the same QuartoAPI object.
+	 * Engines should store the reference to use throughout their lifecycle.
+	 *
+	 * @param quarto - The Quarto API for accessing utilities
+	 */
+	init?: (quarto: QuartoAPI) => void;
+	/**
+	 * Name of the engine
+	 */
+	name: string;
+	/**
+	 * Default extension for files using this engine
+	 */
+	defaultExt: string;
+	/**
+	 * Generate default YAML for this engine
+	 */
+	defaultYaml: (kernel?: string) => string[];
+	/**
+	 * Generate default content for this engine
+	 */
+	defaultContent: (kernel?: string) => string[];
+	/**
+	 * List of file extensions this engine supports
+	 */
+	validExtensions: () => string[];
+	/**
+	 * Whether this engine can handle the given file
+	 *
+	 * @param file - The file path to check
+	 * @param ext - The file extension
+	 * @returns True if this engine can handle the file
+	 */
+	claimsFile: (file: string, ext: string) => boolean;
+	/**
+	 * Whether this engine can handle the given language
+	 */
+	claimsLanguage: (language: string) => boolean;
+	/**
+	 * Whether this engine supports freezing
+	 */
+	canFreeze: boolean;
+	/**
+	 * Whether this engine generates figures
+	 */
+	generatesFigures: boolean;
+	/**
+	 * Directories to ignore during processing (optional)
+	 */
+	ignoreDirs?: () => string[] | undefined;
+	/**
+	 * Semver range specifying the minimum required Quarto version for this engine
+	 * Examples: ">= 1.6.0", "^1.5.0", "1.*"
+	 *
+	 * When specified, Quarto will check at engine registration time whether the
+	 * current version satisfies this requirement. If not, an error will be thrown.
+	 */
+	quartoRequired?: string;
+	/**
+	 * Populate engine-specific CLI commands (optional)
+	 * Called at module initialization to register commands like 'quarto enginename status'
+	 *
+	 * @param command - The CLI command to populate with subcommands
+	 */
+	populateCommand?: (command: Command) => void;
+	/**
+	 * Check installation and capabilities for this engine (optional)
+	 * Used by `quarto check <engine-name>` command
+	 *
+	 * Engines implementing this method will automatically be available as targets
+	 * for the check command (e.g., `quarto check jupyter`, `quarto check knitr`).
+	 *
+	 * @param conf - Check configuration with output settings and services
+	 */
+	checkInstallation?: (conf: CheckConfiguration) => Promise<void>;
+	/**
+	 * Launch a dynamic execution engine with project context
+	 * This is called when the engine is needed for execution
+	 *
+	 * @param context The restricted project context
+	 * @returns ExecutionEngineInstance that can execute documents
+	 */
+	launch: (context: EngineProjectContext) => ExecutionEngineInstance;
+}
+/**
+ * Interface for a launched execution engine
+ * This represents an engine that has been instantiated with a project context
+ * and is ready to execute documents
+ */
+export interface ExecutionEngineInstance {
+	/**
+	 * Name of the engine
+	 */
+	name: string;
+	/**
+	 * Whether this engine supports freezing
+	 */
+	canFreeze: boolean;
+	/**
+	 * Get the markdown content for a file
+	 */
+	markdownForFile(file: string): Promise<MappedString>;
+	/**
+	 * Create an execution target for the given file
+	 */
+	target: (file: string, quiet?: boolean, markdown?: MappedString) => Promise<ExecutionTarget | undefined>;
+	/**
+	 * Get a partitioned view of the markdown
+	 */
+	partitionedMarkdown: (file: string, format?: Format) => Promise<PartitionedMarkdown>;
+	/**
+	 * Filter the format based on engine requirements
+	 */
+	filterFormat?: (source: string, options: RenderOptions, format: Format) => Format;
+	/**
+	 * Execute the target
+	 */
+	execute: (options: ExecuteOptions) => Promise<ExecuteResult>;
+	/**
+	 * Handle skipped execution targets
+	 */
+	executeTargetSkipped?: (target: ExecutionTarget, format: Format) => void;
+	/**
+	 * Get dependencies for the target
+	 */
+	dependencies: (options: DependenciesOptions) => Promise<DependenciesResult>;
+	/**
+	 * Post-process the execution result
+	 */
+	postprocess: (options: PostProcessOptions) => Promise<void>;
+	/**
+	 * Whether this engine can keep source for this target
+	 */
+	canKeepSource?: (target: ExecutionTarget) => boolean;
+	/**
+	 * Get a list of intermediate files generated by this engine
+	 */
+	intermediateFiles?: (input: string) => string[] | undefined;
+	/**
+	 * Run the engine (for interactivity)
+	 */
+	run?: (options: RunOptions) => Promise<void>;
+	/**
+	 * Post-render processing
+	 */
+	postRender?: (file: RenderResultFile) => Promise<void>;
+}
+
+export {
+	Range$1 as Range,
+};
+
+export {};
diff --git a/packages/quarto-types/package-lock.json b/packages/quarto-types/package-lock.json
new file mode 100644
index 00000000000..da6c057f7b2
--- /dev/null
+++ b/packages/quarto-types/package-lock.json
@@ -0,0 +1,259 @@
+{
+  "name": "@quarto/types",
+  "version": "0.1.0",
+  "lockfileVersion": 3,
+  "requires": true,
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+        "string-width": "^4.2.3",
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+}
diff --git a/packages/quarto-types/package.json b/packages/quarto-types/package.json
new file mode 100644
index 00000000000..4c670210b7b
--- /dev/null
+++ b/packages/quarto-types/package.json
@@ -0,0 +1,41 @@
+{
+  "name": "@quarto/types",
+  "version": "0.1.0",
+  "description": "TypeScript type definitions for Quarto engine development",
+  "types": "src/index.ts",
+  "files": [
+    "src",
+    "README.md",
+    "LICENSE"
+  ],
+  "scripts": {
+    "typecheck": "tsc --noEmit",
+    "build": "dts-bundle-generator -o ./dist/index.d.ts --export-referenced-types=false ./src/index.ts",
+    "prebuild": "npm run typecheck"
+  },
+  "keywords": [
+    "quarto",
+    "typescript",
+    "types",
+    "engine"
+  ],
+  "author": "Quarto",
+  "license": "MIT",
+  "publishConfig": {
+    "access": "public"
+  },
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/quarto-dev/quarto-cli.git",
+    "directory": "packages/quarto-types"
+  },
+  "bugs": {
+    "url": "https://github.com/quarto-dev/quarto-cli/issues"
+  },
+  "homepage": "https://github.com/quarto-dev/quarto-cli/tree/main/packages/quarto-types#readme",
+  "devDependencies": {
+    "@types/node": "^24.9.1",
+    "dts-bundle-generator": "^9.5.1",
+    "typescript": "^5.9.3"
+  }
+}
diff --git a/packages/quarto-types/src/check.ts b/packages/quarto-types/src/check.ts
new file mode 100644
index 00000000000..974de53dca6
--- /dev/null
+++ b/packages/quarto-types/src/check.ts
@@ -0,0 +1,77 @@
+/**
+ * Check command types for Quarto
+ */
+
+import type { TempContext } from "./system.ts";
+
+/**
+ * Render services available during check operations
+ * Simplified version containing only what check operations need
+ */
+export interface CheckRenderServices {
+  /** Temporary file management */
+  temp: TempContext;
+
+  /** Placeholder for extension context (not used by check) */
+  extension?: unknown;
+
+  /** Placeholder for notebook context (not used by check) */
+  notebook?: unknown;
+}
+
+/**
+ * Render services with cleanup capability
+ */
+export interface CheckRenderServiceWithLifetime extends CheckRenderServices {
+  /** Cleanup function to release resources */
+  cleanup: () => void;
+
+  /** Optional lifetime management */
+  lifetime?: unknown;
+}
+
+/**
+ * Configuration for check command operations
+ * Used by engines implementing checkInstallation()
+ */
+export interface CheckConfiguration {
+  /** Whether to run strict checks */
+  strict: boolean;
+
+  /** Target being checked (e.g., "jupyter", "knitr", "all") */
+  target: string;
+
+  /** Optional output file path for JSON results */
+  output: string | undefined;
+
+  /** Render services (primarily for temp file management) */
+  services: CheckRenderServiceWithLifetime;
+
+  /** JSON result object (undefined if not outputting JSON) */
+  jsonResult: Record<string, unknown> | undefined;
+}
+
+/**
+ * Options for test-rendering a document during check operations
+ */
+export interface CheckRenderOptions {
+  /** Markdown content to render */
+  content: string;
+
+  /** Language identifier (e.g., "python", "r", "julia") */
+  language: string;
+
+  /** Render services for temp file management */
+  services: CheckRenderServiceWithLifetime;
+}
+
+/**
+ * Result of a check render operation
+ */
+export interface CheckRenderResult {
+  /** Whether the render succeeded */
+  success: boolean;
+
+  /** Error if render failed */
+  error?: Error;
+}
diff --git a/packages/quarto-types/src/cli.ts b/packages/quarto-types/src/cli.ts
new file mode 100644
index 00000000000..8a7e0286795
--- /dev/null
+++ b/packages/quarto-types/src/cli.ts
@@ -0,0 +1,11 @@
+/**
+ * Minimal type definitions for CLI commands
+ */
+
+export interface Command {
+  command(name: string, description?: string): Command;
+  description(description: string): Command;
+  action(fn: (...args: any[]) => void | Promise<void>): Command;
+  arguments(args: string): Command;
+  option(flags: string, description: string, options?: any): Command;
+}
\ No newline at end of file
diff --git a/packages/quarto-types/src/console.ts b/packages/quarto-types/src/console.ts
new file mode 100644
index 00000000000..5959f2da20f
--- /dev/null
+++ b/packages/quarto-types/src/console.ts
@@ -0,0 +1,33 @@
+/**
+ * Console and UI types for Quarto
+ */
+
+/**
+ * Options for displaying a spinner in the console
+ */
+export interface SpinnerOptions {
+  /** Message to display with the spinner (or function that returns message) */
+  message: string | (() => string);
+  /** Message to display when done, or false to hide, or true to keep original message */
+  doneMessage?: string | boolean;
+}
+
+/**
+ * Options for log messages (info, warning, error)
+ */
+export interface LogMessageOptions {
+  /** Whether to add a trailing newline (default: true) */
+  newline?: boolean;
+  /** Apply bold formatting */
+  bold?: boolean;
+  /** Apply dim/gray formatting */
+  dim?: boolean;
+  /** Number of spaces to indent each line */
+  indent?: number;
+  /** Custom format function applied to each line */
+  format?: (line: string) => string;
+  /** Enable color formatting (default: true) */
+  colorize?: boolean;
+  /** Remove ANSI escape codes from output */
+  stripAnsiCode?: boolean;
+}
diff --git a/packages/quarto-types/src/execution-engine.ts b/packages/quarto-types/src/execution-engine.ts
new file mode 100644
index 00000000000..3c20446140c
--- /dev/null
+++ b/packages/quarto-types/src/execution-engine.ts
@@ -0,0 +1,243 @@
+/**
+ * Execution engine interfaces for Quarto
+ */
+
+import type { MappedString } from "./text.ts";
+import type { Format } from "./format.ts";
+import type { Metadata } from "./metadata.ts";
+import type { EngineProjectContext } from "./project-context.ts";
+import type { Command } from "./cli.ts";
+import type { QuartoAPI } from "./quarto-api.ts";
+import type {
+  ExecuteOptions,
+  ExecuteResult,
+  DependenciesOptions,
+  DependenciesResult,
+  PostProcessOptions,
+  RunOptions,
+} from "./execution.ts";
+import type {
+  RenderFlags,
+  RenderOptions,
+  RenderResultFile,
+} from "./render.ts";
+import type { PartitionedMarkdown } from "./markdown.ts";
+import type { PandocIncludes, PandocIncludeLocation } from "./pandoc.ts";
+import type { CheckConfiguration } from "./check.ts";
+
+/**
+ * Execution target (filename and context)
+ */
+export interface ExecutionTarget {
+  /** Original source file */
+  source: string;
+
+  /** Input file after preprocessing */
+  input: string;
+
+  /** Markdown content */
+  markdown: MappedString;
+
+  /** Document metadata */
+  metadata: Metadata;
+
+  /** Optional target-specific data */
+  data?: unknown;
+}
+
+/**
+ * Interface for execution engine discovery
+ * Responsible for the static aspects of engine discovery (not requiring project context)
+ */
+export interface ExecutionEngineDiscovery {
+  /**
+   * Initialize the engine with the Quarto API (optional)
+   * May be called multiple times but always with the same QuartoAPI object.
+   * Engines should store the reference to use throughout their lifecycle.
+   *
+   * @param quarto - The Quarto API for accessing utilities
+   */
+  init?: (quarto: QuartoAPI) => void;
+
+  /**
+   * Name of the engine
+   */
+  name: string;
+
+  /**
+   * Default extension for files using this engine
+   */
+  defaultExt: string;
+
+  /**
+   * Generate default YAML for this engine
+   */
+  defaultYaml: (kernel?: string) => string[];
+
+  /**
+   * Generate default content for this engine
+   */
+  defaultContent: (kernel?: string) => string[];
+
+  /**
+   * List of file extensions this engine supports
+   */
+  validExtensions: () => string[];
+
+  /**
+   * Whether this engine can handle the given file
+   *
+   * @param file - The file path to check
+   * @param ext - The file extension
+   * @returns True if this engine can handle the file
+   */
+  claimsFile: (file: string, ext: string) => boolean;
+
+  /**
+   * Whether this engine can handle the given language
+   */
+  claimsLanguage: (language: string) => boolean;
+
+  /**
+   * Whether this engine supports freezing
+   */
+  canFreeze: boolean;
+
+  /**
+   * Whether this engine generates figures
+   */
+  generatesFigures: boolean;
+
+  /**
+   * Directories to ignore during processing (optional)
+   */
+  ignoreDirs?: () => string[] | undefined;
+
+  /**
+   * Semver range specifying the minimum required Quarto version for this engine
+   * Examples: ">= 1.6.0", "^1.5.0", "1.*"
+   *
+   * When specified, Quarto will check at engine registration time whether the
+   * current version satisfies this requirement. If not, an error will be thrown.
+   */
+  quartoRequired?: string;
+
+  /**
+   * Populate engine-specific CLI commands (optional)
+   * Called at module initialization to register commands like 'quarto enginename status'
+   *
+   * @param command - The CLI command to populate with subcommands
+   */
+  populateCommand?: (command: Command) => void;
+
+  /**
+   * Check installation and capabilities for this engine (optional)
+   * Used by `quarto check <engine-name>` command
+   *
+   * Engines implementing this method will automatically be available as targets
+   * for the check command (e.g., `quarto check jupyter`, `quarto check knitr`).
+   *
+   * @param conf - Check configuration with output settings and services
+   */
+  checkInstallation?: (conf: CheckConfiguration) => Promise<void>;
+
+  /**
+   * Launch a dynamic execution engine with project context
+   * This is called when the engine is needed for execution
+   *
+   * @param context The restricted project context
+   * @returns ExecutionEngineInstance that can execute documents
+   */
+  launch: (context: EngineProjectContext) => ExecutionEngineInstance;
+}
+
+/**
+ * Interface for a launched execution engine
+ * This represents an engine that has been instantiated with a project context
+ * and is ready to execute documents
+ */
+export interface ExecutionEngineInstance {
+  /**
+   * Name of the engine
+   */
+  name: string;
+
+  /**
+   * Whether this engine supports freezing
+   */
+  canFreeze: boolean;
+
+  /**
+   * Get the markdown content for a file
+   */
+  markdownForFile(file: string): Promise<MappedString>;
+
+  /**
+   * Create an execution target for the given file
+   */
+  target: (
+    file: string,
+    quiet?: boolean,
+    markdown?: MappedString,
+  ) => Promise<ExecutionTarget | undefined>;
+
+  /**
+   * Get a partitioned view of the markdown
+   */
+  partitionedMarkdown: (
+    file: string,
+    format?: Format,
+  ) => Promise<PartitionedMarkdown>;
+
+  /**
+   * Filter the format based on engine requirements
+   */
+  filterFormat?: (
+    source: string,
+    options: RenderOptions,
+    format: Format,
+  ) => Format;
+
+  /**
+   * Execute the target
+   */
+  execute: (options: ExecuteOptions) => Promise<ExecuteResult>;
+
+  /**
+   * Handle skipped execution targets
+   */
+  executeTargetSkipped?: (
+    target: ExecutionTarget,
+    format: Format,
+  ) => void;
+
+  /**
+   * Get dependencies for the target
+   */
+  dependencies: (options: DependenciesOptions) => Promise<DependenciesResult>;
+
+  /**
+   * Post-process the execution result
+   */
+  postprocess: (options: PostProcessOptions) => Promise<void>;
+
+  /**
+   * Whether this engine can keep source for this target
+   */
+  canKeepSource?: (target: ExecutionTarget) => boolean;
+
+  /**
+   * Get a list of intermediate files generated by this engine
+   */
+  intermediateFiles?: (input: string) => string[] | undefined;
+
+  /**
+   * Run the engine (for interactivity)
+   */
+  run?: (options: RunOptions) => Promise<void>;
+
+  /**
+   * Post-render processing
+   */
+  postRender?: (file: RenderResultFile) => Promise<void>;
+}
diff --git a/packages/quarto-types/src/execution.ts b/packages/quarto-types/src/execution.ts
new file mode 100644
index 00000000000..ac02659a14e
--- /dev/null
+++ b/packages/quarto-types/src/execution.ts
@@ -0,0 +1,199 @@
+/**
+ * Execution workflow types for Quarto engines
+ */
+
+import type { MappedString } from "./text.ts";
+import type { Format } from "./format.ts";
+import type { Metadata } from "./metadata.ts";
+import type { ExecutionTarget, ExecutionEngineInstance } from "./execution-engine.ts";
+import type { EngineProjectContext } from "./project-context.ts";
+import type { PandocIncludes } from "./pandoc.ts";
+
+/**
+ * Options for execution
+ */
+export interface ExecuteOptions {
+  /** The execution target */
+  target: ExecutionTarget;
+
+  /** Format to render to */
+  format: Format;
+
+  /** Directory for resources */
+  resourceDir: string;
+
+  /** Directory for temporary files */
+  tempDir: string;
+
+  /** Whether to include dependencies */
+  dependencies: boolean;
+
+  /** Project directory if applicable */
+  projectDir?: string;
+
+  /** Library directory */
+  libDir?: string;
+
+  /** Current working directory */
+  cwd: string;
+
+  /** Parameters passed to document */
+  params?: { [key: string]: unknown };
+
+  /** Whether to suppress output */
+  quiet?: boolean;
+
+  /** Whether execution is for preview server */
+  previewServer?: boolean;
+
+  /** List of languages handled by cell language handlers */
+  handledLanguages: string[];
+
+  /** Project context */
+  project: EngineProjectContext;
+}
+
+/**
+ * Result of execution
+ */
+export interface ExecuteResult {
+  /** Resulting markdown content */
+  markdown: string;
+
+  /** Supporting files */
+  supporting: string[];
+
+  /** Filter scripts */
+  filters: string[];
+
+  /** Updated metadata */
+  metadata?: Metadata;
+
+  /** Pandoc options */
+  pandoc?: Record<string, unknown>;
+
+  /** Pandoc includes */
+  includes?: PandocIncludes;
+
+  /** Engine name */
+  engine?: string;
+
+  /** Engine-specific dependencies */
+  engineDependencies?: Record<string, Array<unknown>>;
+
+  /** Content to preserve during processing */
+  preserve?: Record<string, string>;
+
+  /** Whether post-processing is required */
+  postProcess?: boolean;
+
+  /** Additional resource files */
+  resourceFiles?: string[];
+}
+
+/**
+ * Options for retrieving dependencies
+ */
+export interface DependenciesOptions {
+  /** The execution target */
+  target: ExecutionTarget;
+
+  /** Format to render to */
+  format: Format;
+
+  /** Output file path */
+  output: string;
+
+  /** Directory for resources */
+  resourceDir: string;
+
+  /** Directory for temporary files */
+  tempDir: string;
+
+  /** Project directory if applicable */
+  projectDir?: string;
+
+  /** Library directory */
+  libDir?: string;
+
+  /** Dependencies to include */
+  dependencies?: Array<unknown>;
+
+  /** Whether to suppress output */
+  quiet?: boolean;
+}
+
+/**
+ * Result of retrieving dependencies
+ */
+export interface DependenciesResult {
+  /** Pandoc includes */
+  includes: PandocIncludes;
+}
+
+/**
+ * Options for post-processing
+ */
+export interface PostProcessOptions {
+  /** The execution engine */
+  engine: ExecutionEngineInstance;
+
+  /** The execution target */
+  target: ExecutionTarget;
+
+  /** Format to render to */
+  format: Format;
+
+  /** Output file path */
+  output: string;
+
+  /** Directory for temporary files */
+  tempDir: string;
+
+  /** Project directory if applicable */
+  projectDir?: string;
+
+  /** Content to preserve during processing */
+  preserve?: Record<string, string>;
+
+  /** Whether to suppress output */
+  quiet?: boolean;
+}
+
+/**
+ * Options for running the engine
+ */
+export interface RunOptions {
+  /** Input file path */
+  input: string;
+
+  /** Whether to render */
+  render: boolean;
+
+  /** Whether to open in browser */
+  browser: boolean;
+
+  /** Directory for temporary files */
+  tempDir: string;
+
+  /** Whether to reload */
+  reload?: boolean;
+
+  /** Target format */
+  format?: string;
+
+  /** Project directory if applicable */
+  projectDir?: string;
+
+  /** Port for server */
+  port?: number;
+
+  /** Host for server */
+  host?: string;
+
+  /** Whether to suppress output */
+  quiet?: boolean;
+
+  /** Callback when ready */
+  onReady?: () => Promise<void>;
+}
diff --git a/packages/quarto-types/src/external-engine.ts b/packages/quarto-types/src/external-engine.ts
new file mode 100644
index 00000000000..b272aefb420
--- /dev/null
+++ b/packages/quarto-types/src/external-engine.ts
@@ -0,0 +1,13 @@
+/**
+ * External engine interfaces for Quarto
+ */
+
+/**
+ * Represents an external engine specified in a project
+ */
+export interface ExternalEngine {
+  /**
+   * Path to the engine implementation
+   */
+  path: string;
+}
\ No newline at end of file
diff --git a/packages/quarto-types/src/format.ts b/packages/quarto-types/src/format.ts
new file mode 100644
index 00000000000..313e5b0b36e
--- /dev/null
+++ b/packages/quarto-types/src/format.ts
@@ -0,0 +1,66 @@
+/**
+ * Format type definitions for Quarto output formats
+ */
+
+import type { Metadata } from "./metadata.ts";
+
+/**
+ * Valid format identifier keys
+ */
+export type FormatIdentifierKey =
+  | "base-format"
+  | "target-format"
+  | "display-name"
+  | "extension-name";
+
+/**
+ * Format identifier information
+ */
+export type FormatIdentifier = {
+  [K in FormatIdentifierKey]?: string;
+};
+
+/**
+ * Format language/localization strings
+ */
+export interface FormatLanguage {
+  [key: string]: string | undefined;
+}
+
+/**
+ * Complete Format type for engine interfaces
+ */
+export interface Format {
+  /**
+   * Format identifier
+   */
+  identifier: FormatIdentifier;
+
+  /**
+   * Format language/localization strings
+   */
+  language: FormatLanguage;
+
+  /**
+   * Document metadata
+   */
+  metadata: Metadata;
+
+  /**
+   * Format rendering options
+   */
+  render: Record<string, unknown>;
+
+  /**
+   * Format execution options
+   */
+  execute: Record<string, unknown>;
+
+  /**
+   * Format pandoc options
+   */
+  pandoc: {
+    to?: string;
+    [key: string]: unknown;
+  };
+}
diff --git a/packages/quarto-types/src/index.ts b/packages/quarto-types/src/index.ts
new file mode 100644
index 00000000000..f494182fa64
--- /dev/null
+++ b/packages/quarto-types/src/index.ts
@@ -0,0 +1,34 @@
+/**
+ * @quarto/types
+ * TypeScript type definitions for Quarto execution engines
+ */
+
+// Core engine interfaces (starting points)
+export type * from "./execution-engine.ts";
+export type * from "./project-context.ts";
+export type * from "./quarto-api.ts";
+
+// Execution & rendering
+export type * from "./execution.ts";
+export type * from "./render.ts";
+export type * from "./check.ts";
+
+// Format & metadata
+export type * from "./metadata.ts";
+export type * from "./format.ts";
+
+// Text & markdown
+export type * from "./text.ts";
+export type * from "./markdown.ts";
+
+// System & process
+export type * from "./system.ts";
+export type * from "./console.ts";
+export type * from "./pandoc.ts";
+
+// Engine-specific
+export type * from "./jupyter.ts";
+export type * from "./external-engine.ts";
+
+// CLI
+export type * from "./cli.ts";
diff --git a/packages/quarto-types/src/jupyter.ts b/packages/quarto-types/src/jupyter.ts
new file mode 100644
index 00000000000..dca4c437796
--- /dev/null
+++ b/packages/quarto-types/src/jupyter.ts
@@ -0,0 +1,287 @@
+/*
+ * jupyter-types.d.ts
+ *
+ * Copyright (C) 2023 Posit Software, PBC
+ */
+
+// deno-lint-ignore-file camelcase
+
+import type { ExecuteOptions } from './execution.ts';
+import type { Metadata } from './metadata.ts';
+import type { Format } from './format.ts';
+
+/**
+ * Jupyter notebook kernelspec
+ */
+export interface JupyterKernelspec {
+  name: string;
+  language: string;
+  display_name: string;
+  path?: string;
+}
+
+/**
+ * Jupyter language info
+ */
+export type JupyterLanguageInfo = {
+  name: string;
+  codemirror_mode?: string | Record<string, unknown>;
+  file_extension?: string;
+  mimetype?: string;
+  pygments_lexer?: string;
+};
+
+/**
+ * Jupyter notebook cell metadata
+ */
+export interface JupyterCellMetadata {
+  [key: string]: unknown;
+}
+
+/**
+ * Jupyter notebook output
+ */
+export interface JupyterOutput {
+  output_type: string;
+  metadata?: {
+    [mimetype: string]: Record<string, unknown>;
+  };
+  execution_count?: number;
+  [key: string]: unknown;
+}
+
+/**
+ * Jupyter output stream
+ */
+export interface JupyterOutputStream extends JupyterOutput {
+  name: "stdout" | "stderr";
+  text: string[] | string;
+}
+
+/**
+ * Jupyter output display data
+ */
+export interface JupyterOutputDisplayData extends JupyterOutput {
+  data: { [mimeType: string]: unknown };
+  metadata: { [mimeType: string]: Record<string, unknown> };
+  noCaption?: boolean;
+}
+
+/**
+ * Jupyter output figure options
+ */
+export interface JupyterOutputFigureOptions {
+  [key: string]: unknown;
+}
+
+/**
+ * Jupyter cell options
+ */
+export interface JupyterCellOptions extends JupyterOutputFigureOptions {
+  [key: string]: unknown;
+}
+
+/**
+ * Jupyter cell with options
+ */
+export interface JupyterCellWithOptions extends JupyterCell {
+  id: string;
+  options: JupyterCellOptions;
+  optionsSource: string[];
+}
+
+/**
+ * Jupyter notebook cell
+ */
+export interface JupyterCell {
+  cell_type: "markdown" | "code" | "raw";
+  metadata: JupyterCellMetadata;
+  source: string | string[];
+  id?: string;
+  execution_count?: number | null;
+  outputs?: JupyterOutput[];
+  attachments?: {
+    [filename: string]: {
+      [mimetype: string]: string | string[];
+    };
+  };
+}
+
+/**
+ * Jupyter user expression
+ */
+export interface JupyterUserExpression {
+  expression: string;
+  result: JupyterUserExpressionResult;
+}
+
+/**
+ * Jupyter user expression result
+ */
+export interface JupyterUserExpressionResult extends JupyterCellOutputData {
+  metadata: Metadata;
+  status: string;
+}
+
+/**
+ * Jupyter cell output data
+ */
+export interface JupyterCellOutputData {
+  data: { [mimeType: string]: unknown };
+}
+
+/**
+ * Jupyter cell slideshow
+ */
+export interface JupyterCellSlideshow {
+  [key: string]: string;
+}
+
+/**
+ * Jupyter notebook structure
+ */
+export interface JupyterNotebook {
+  cells: JupyterCell[];
+  metadata: {
+    kernelspec: JupyterKernelspec;
+    widgets?: Record<string, unknown>;
+    language_info?: JupyterLanguageInfo;
+    [key: string]: unknown;
+  };
+  nbformat: number;
+  nbformat_minor: number;
+}
+
+/**
+ * Asset paths for Jupyter notebook output
+ */
+export interface JupyterNotebookAssetPaths {
+  base_dir: string;
+  files_dir: string;
+  figures_dir: string;
+  supporting_dir: string;
+}
+
+/**
+ * Format execution options
+ */
+export interface FormatExecute {
+  [key: string]: unknown;
+}
+
+/**
+ * Format render options
+ */
+export interface FormatRender {
+  [key: string]: unknown;
+}
+
+/**
+ * Format pandoc options
+ */
+export interface FormatPandoc {
+  to?: string;
+  [key: string]: unknown;
+}
+
+/**
+ * Jupyter widget state information
+ */
+export interface JupyterWidgetsState {
+  state: Record<string, unknown>;
+  version_major: number;
+  version_minor: number;
+}
+
+/**
+ * Widget dependencies from Jupyter notebook
+ */
+export interface JupyterWidgetDependencies {
+  jsWidgets: boolean;
+  jupyterWidgets: boolean;
+  htmlLibraries: string[];
+  widgetsState?: JupyterWidgetsState;
+}
+
+/**
+ * Jupyter capabilities
+ */
+export interface JupyterCapabilities {
+  versionMajor: number;
+  versionMinor: number;
+  versionPatch: number;
+  versionStr: string;
+  execPrefix: string;
+  executable: string;
+  conda: boolean;
+  pyLauncher: boolean;
+  jupyter_core: string | null;
+  nbformat: string | null;
+  nbclient: string | null;
+  ipykernel: string | null;
+  shiny: string | null;
+}
+
+/**
+ * Extended Jupyter capabilities
+ */
+export interface JupyterCapabilitiesEx extends JupyterCapabilities {
+  kernels?: JupyterKernelspec[];
+  venv?: boolean;
+}
+
+/**
+ * Cell output with markdown
+ */
+export interface JupyterCellOutput {
+  id: string;
+  markdown: string;
+  metadata: Record<string, unknown>;
+  options: Record<string, unknown>;
+}
+
+/**
+ * Options for converting Jupyter notebook to markdown
+ */
+export interface JupyterToMarkdownOptions {
+  executeOptions: ExecuteOptions;
+  language: string;
+  assets: JupyterNotebookAssetPaths;
+  execute: FormatExecute;
+  keepHidden?: boolean;
+  toHtml: boolean;
+  toLatex: boolean;
+  toMarkdown: boolean;
+  toIpynb: boolean;
+  toPresentation: boolean;
+  figFormat?: string;
+  figDpi?: number;
+  figPos?: string;
+  preserveCellMetadata?: boolean;
+  preserveCodeCellYaml?: boolean;
+  outputPrefix?: string;
+  fixups?: string | unknown[];
+}
+
+/**
+ * Options for converting Quarto markdown to Jupyter notebook
+ */
+export interface QuartoMdToJupyterOptions {
+  title?: string;
+  format?: Format;
+}
+
+/**
+ * Result of converting Jupyter notebook to markdown
+ */
+export interface JupyterToMarkdownResult {
+  cellOutputs: JupyterCellOutput[];
+  notebookOutputs?: {
+    prefix?: string;
+    suffix?: string;
+  };
+  dependencies?: JupyterWidgetDependencies;
+  htmlPreserve?: Record<string, string>;
+  pandoc?: Record<string, unknown>;
+}
+
diff --git a/packages/quarto-types/src/markdown.ts b/packages/quarto-types/src/markdown.ts
new file mode 100644
index 00000000000..76b461accce
--- /dev/null
+++ b/packages/quarto-types/src/markdown.ts
@@ -0,0 +1,55 @@
+/**
+ * Markdown structure types for Quarto
+ */
+
+import type { MappedString } from "./text.ts";
+import type { Metadata } from "./metadata.ts";
+
+/**
+ * Cell type from breaking Quarto markdown
+ */
+export interface QuartoMdCell {
+  id?: string;
+  cell_type: { language: string } | "markdown" | "raw";
+  options?: Record<string, unknown>;
+  source: MappedString;
+  sourceVerbatim: MappedString;
+  sourceWithYaml?: MappedString;
+  sourceOffset: number;
+  sourceStartLine: number;
+  cellStartLine: number;
+}
+
+/**
+ * Result from breaking Quarto markdown
+ */
+export interface QuartoMdChunks {
+  cells: QuartoMdCell[];
+}
+
+/**
+ * A partitioned markdown document
+ */
+export interface PartitionedMarkdown {
+  /** YAML frontmatter as parsed metadata */
+  yaml?: Metadata;
+
+  /** Text of the first heading */
+  headingText?: string;
+
+  /** Attributes of the first heading */
+  headingAttr?: {
+    id: string;
+    classes: string[];
+    keyvalue: Array<[string, string]>;
+  };
+
+  /** Whether the document contains references */
+  containsRefs: boolean;
+
+  /** Complete markdown content */
+  markdown: string;
+
+  /** Markdown without YAML frontmatter */
+  srcMarkdownNoYaml: string;
+}
diff --git a/packages/quarto-types/src/metadata.ts b/packages/quarto-types/src/metadata.ts
new file mode 100644
index 00000000000..46ec9644274
--- /dev/null
+++ b/packages/quarto-types/src/metadata.ts
@@ -0,0 +1,10 @@
+/**
+ * Basic metadata types used across Quarto
+ */
+
+/**
+ * Generic metadata key-value store
+ */
+export type Metadata = {
+  [key: string]: unknown;
+};
diff --git a/packages/quarto-types/src/pandoc.ts b/packages/quarto-types/src/pandoc.ts
new file mode 100644
index 00000000000..4ecd99c6d41
--- /dev/null
+++ b/packages/quarto-types/src/pandoc.ts
@@ -0,0 +1,19 @@
+/**
+ * Pandoc types for Quarto
+ */
+
+/**
+ * Valid Pandoc include locations
+ */
+export type PandocIncludeLocation =
+  | "include-in-header"
+  | "include-before-body"
+  | "include-after-body";
+
+/**
+ * Pandoc includes for headers, body, etc.
+ * Mapped type that allows any of the valid include locations
+ */
+export type PandocIncludes = {
+  [K in PandocIncludeLocation]?: string[];
+};
diff --git a/packages/quarto-types/src/project-context.ts b/packages/quarto-types/src/project-context.ts
new file mode 100644
index 00000000000..98b1f299a05
--- /dev/null
+++ b/packages/quarto-types/src/project-context.ts
@@ -0,0 +1,100 @@
+/**
+ * Project context interfaces for Quarto engines
+ */
+
+import type { MappedString } from "./text.ts";
+import type {
+  ExecutionEngineInstance,
+  ExecutionTarget,
+} from "./execution-engine.ts";
+import type { ExternalEngine } from "./external-engine.ts";
+import type { Metadata } from "./metadata.ts";
+
+/**
+ * Information about a file being processed
+ */
+export interface FileInformation {
+  /**
+   * Full markdown content after expanding includes
+   */
+  fullMarkdown?: MappedString;
+
+  /**
+   * Map of file inclusions
+   */
+  includeMap?: {
+    source: string;
+    target: string;
+  }[];
+
+  /**
+   * The launched execution engine for this file
+   */
+  engine?: ExecutionEngineInstance;
+
+  /**
+   * The execution target for this file
+   */
+  target?: ExecutionTarget;
+
+  /**
+   * Document metadata
+   */
+  metadata?: Metadata;
+}
+
+/**
+ * A restricted version of ProjectContext that only exposes
+ * functionality needed by execution engines.
+ */
+export interface EngineProjectContext {
+  /**
+   * Base directory of the project
+   */
+  dir: string;
+
+  /**
+   * Flag indicating if project consists of a single file
+   */
+  isSingleFile: boolean;
+
+  /**
+   * Config object containing project configuration
+   * Used primarily for config?.engines access
+   */
+  config?: {
+    engines?: (string | ExternalEngine)[];
+    project?: {
+      outputDir?: string;
+    };
+  };
+
+  /**
+   * For file information cache management
+   * Used for the transient notebook tracking in Jupyter
+   */
+  fileInformationCache: Map<string, FileInformation>;
+
+  /**
+   * Get the output directory for the project
+   *
+   * @returns Path to output directory
+   */
+  getOutputDirectory: () => string;
+
+  /**
+   * Resolves full markdown content for a file, including expanding includes
+   *
+   * @param engine - The execution engine
+   * @param file - Path to the file
+   * @param markdown - Optional existing markdown content
+   * @param force - Whether to force re-resolution even if cached
+   * @returns Promise resolving to mapped markdown string
+   */
+  resolveFullMarkdownForFile: (
+    engine: ExecutionEngineInstance | undefined,
+    file: string,
+    markdown?: MappedString,
+    force?: boolean,
+  ) => Promise<MappedString>;
+}
diff --git a/packages/quarto-types/src/quarto-api.ts b/packages/quarto-types/src/quarto-api.ts
new file mode 100644
index 00000000000..c96e4656c8b
--- /dev/null
+++ b/packages/quarto-types/src/quarto-api.ts
@@ -0,0 +1,784 @@
+/*
+ * quarto-api.d.ts
+ *
+ * Copyright (C) 2023 Posit Software, PBC
+ */
+
+import type { MappedString } from "./text.ts";
+import type { Metadata } from "./metadata.ts";
+import type { Format } from "./format.ts";
+import type { PartitionedMarkdown } from "./markdown.ts";
+import type { EngineProjectContext } from "./project-context.ts";
+import type {
+  JupyterNotebook,
+  JupyterToMarkdownOptions,
+  JupyterToMarkdownResult,
+  JupyterWidgetDependencies,
+  JupyterKernelspec,
+  JupyterCapabilities,
+  JupyterNotebookAssetPaths,
+  FormatPandoc,
+} from "./jupyter.ts";
+import type { PandocIncludes } from "./pandoc.ts";
+import type { PostProcessOptions } from "./execution.ts";
+import type {
+  PreviewServer,
+  ProcessResult,
+  ExecProcessOptions,
+  TempContext,
+} from "./system.ts";
+import type { LogMessageOptions, SpinnerOptions } from "./console.ts";
+import type {
+  CheckRenderOptions,
+  CheckRenderResult,
+} from "./check.ts";
+import type { QuartoMdChunks, QuartoMdCell } from "./markdown.ts";
+
+/**
+ * Global Quarto API interface
+ */
+export interface QuartoAPI {
+  /**
+   * Markdown processing utilities using regex patterns
+   */
+  markdownRegex: {
+    /**
+     * Extract and parse YAML frontmatter from markdown
+     *
+     * @param markdown - Markdown content with YAML frontmatter
+     * @returns Parsed metadata object
+     */
+    extractYaml: (markdown: string) => Metadata;
+
+    /**
+     * Split markdown into components (YAML, heading, content)
+     *
+     * @param markdown - Markdown content
+     * @returns Partitioned markdown with yaml, heading, and content sections
+     */
+    partition: (markdown: string) => PartitionedMarkdown;
+
+    /**
+     * Extract programming languages from code blocks
+     *
+     * @param markdown - Markdown content to analyze
+     * @returns Set of language identifiers found in fenced code blocks
+     */
+    getLanguages: (markdown: string) => Set<string>;
+
+    /**
+     * Break Quarto markdown into cells
+     *
+     * @param src - Markdown string or MappedString
+     * @param validate - Whether to validate cells (default: false)
+     * @param lenient - Whether to use lenient parsing (default: false)
+     * @returns Promise resolving to chunks with cells
+     */
+    breakQuartoMd: (
+      src: string | MappedString,
+      validate?: boolean,
+      lenient?: boolean,
+    ) => Promise<QuartoMdChunks>;
+  };
+
+  /**
+   * MappedString utilities for source location tracking
+   */
+  mappedString: {
+    /**
+     * Create a mapped string from plain text
+     *
+     * @param text - Text content
+     * @param fileName - Optional filename for source tracking
+     * @returns MappedString with identity mapping
+     */
+    fromString: (text: string, fileName?: string) => MappedString;
+
+    /**
+     * Read a file and create a mapped string
+     *
+     * @param path - Path to the file to read
+     * @returns MappedString with file content and source information
+     */
+    fromFile: (path: string) => MappedString;
+
+    /**
+     * Normalize newlines while preserving source mapping
+     *
+     * @param markdown - MappedString to normalize
+     * @returns MappedString with \r\n converted to \n
+     */
+    normalizeNewlines: (markdown: MappedString) => MappedString;
+
+    /**
+     * Split a MappedString into lines
+     *
+     * @param str - MappedString to split
+     * @param keepNewLines - Whether to keep newline characters (default: false)
+     * @returns Array of MappedStrings, one per line
+     */
+    splitLines: (str: MappedString, keepNewLines?: boolean) => MappedString[];
+
+    /**
+     * Convert character offset to line/column coordinates
+     *
+     * @param str - MappedString to query
+     * @param offset - Character offset to convert
+     * @returns Line and column numbers (1-indexed)
+     */
+    indexToLineCol: (
+      str: MappedString,
+      offset: number,
+    ) => { line: number; column: number };
+  };
+
+  /**
+   * Jupyter notebook integration utilities
+   */
+  jupyter: {
+    // 1. Notebook Detection & Introspection
+
+    /**
+     * Check if a file is a Jupyter notebook
+     *
+     * @param file - File path to check
+     * @returns True if file is a Jupyter notebook (.ipynb)
+     */
+    isJupyterNotebook: (file: string) => boolean;
+
+    /**
+     * Check if a file is a Jupyter percent script
+     *
+     * @param file - File path to check
+     * @param extensions - Optional array of extensions to check (default: ['.py', '.jl', '.r'])
+     * @returns True if file is a Jupyter percent script
+     */
+    isPercentScript: (file: string, extensions?: string[]) => boolean;
+
+    /**
+     * List of Jupyter notebook file extensions
+     */
+    notebookExtensions: string[];
+
+    /**
+     * Extract kernelspec from markdown content
+     *
+     * @param markdown - Markdown content with YAML frontmatter
+     * @returns Extracted kernelspec or undefined if not found
+     */
+    kernelspecFromMarkdown: (markdown: string) => JupyterKernelspec | undefined;
+
+    /**
+     * Find a Jupyter kernelspec that supports a given language
+     *
+     * @param language - Language to find kernel for (e.g., "python", "julia", "r")
+     * @returns Promise resolving to matching kernelspec or undefined if not found
+     */
+    kernelspecForLanguage: (
+      language: string,
+    ) => Promise<JupyterKernelspec | undefined>;
+
+    /**
+     * Convert JSON string to Jupyter notebook
+     *
+     * @param nbJson - JSON string containing notebook data
+     * @returns Parsed Jupyter notebook object
+     */
+    fromJSON: (nbJson: string) => JupyterNotebook;
+
+    // 2. Notebook Conversion
+
+    /**
+     * Convert a Jupyter notebook to markdown
+     *
+     * @param nb - Jupyter notebook to convert
+     * @param options - Conversion options
+     * @returns Converted markdown with cell outputs and dependencies
+     */
+    toMarkdown: (
+      nb: JupyterNotebook,
+      options: JupyterToMarkdownOptions,
+    ) => Promise<JupyterToMarkdownResult>;
+
+    /**
+     * Convert Jupyter notebook file to markdown
+     *
+     * @param file - Path to notebook file
+     * @param format - Optional format to use for conversion
+     * @returns Markdown content extracted from notebook
+     */
+    markdownFromNotebookFile: (file: string, format?: Format) => string;
+
+    /**
+     * Convert Jupyter notebook JSON to markdown
+     *
+     * @param nbJson - Notebook JSON string
+     * @returns Markdown content extracted from notebook
+     */
+    markdownFromNotebookJSON: (nbJson: string) => string;
+
+    /**
+     * Convert a Jupyter percent script to markdown
+     *
+     * @param file - Path to the percent script file
+     * @returns Converted markdown content
+     */
+    percentScriptToMarkdown: (file: string) => string;
+
+    /**
+     * Convert Quarto markdown to Jupyter notebook
+     *
+     * @param markdown - Markdown content with YAML frontmatter
+     * @param includeIds - Whether to include cell IDs
+     * @param project - Optional project context for config merging
+     * @returns Promise resolving to Jupyter notebook generated from markdown
+     */
+    quartoMdToJupyter: (
+      markdown: string,
+      includeIds: boolean,
+      project?: EngineProjectContext,
+    ) => Promise<JupyterNotebook>;
+
+    // 3. Notebook Processing & Assets
+
+    /**
+     * Apply filters to a Jupyter notebook
+     *
+     * @param nb - Jupyter notebook to filter
+     * @param filters - Array of filter strings to apply
+     * @returns Filtered notebook
+     */
+    notebookFiltered: (
+      nb: JupyterNotebook,
+      filters: string[],
+    ) => JupyterNotebook;
+
+    /**
+     * Create asset paths for Jupyter notebook output
+     *
+     * @param input - Input file path
+     * @param to - Output format (optional)
+     * @returns Asset paths for files, figures, and supporting directories
+     */
+    assets: (input: string, to?: string) => JupyterNotebookAssetPaths;
+
+    /**
+     * Generate Pandoc includes for Jupyter widget dependencies
+     *
+     * @param deps - Widget dependencies
+     * @param tempDir - Temporary directory for includes
+     * @returns Pandoc includes structure
+     */
+    widgetDependencyIncludes: (
+      deps: JupyterWidgetDependencies,
+      tempDir: string,
+    ) => PandocIncludes;
+
+    /**
+     * Convert result dependencies to Pandoc includes
+     *
+     * @param tempDir - Temporary directory for includes
+     * @param dependencies - Widget dependencies from execution result
+     * @returns Pandoc includes structure
+     */
+    resultIncludes: (
+      tempDir: string,
+      dependencies?: JupyterWidgetDependencies,
+    ) => PandocIncludes;
+
+    /**
+     * Extract engine dependencies from result dependencies
+     *
+     * @param dependencies - Widget dependencies from execution result
+     * @returns Array of widget dependencies or undefined
+     */
+    resultEngineDependencies: (
+      dependencies?: JupyterWidgetDependencies,
+    ) => Array<JupyterWidgetDependencies> | undefined;
+
+    // 4. Runtime & Environment
+
+    /**
+     * Get Python executable command
+     *
+     * @param python - Optional Python executable override
+     * @returns Promise resolving to array of command line arguments
+     */
+    pythonExec: (python?: string) => Promise<string[]>;
+
+    /**
+     * Get Jupyter capabilities
+     *
+     * @param python - Optional Python executable override
+     * @param jupyter - Optional Jupyter executable override
+     * @returns Promise resolving to Jupyter capabilities
+     */
+    capabilities: (
+      python?: string,
+      jupyter?: string,
+    ) => Promise<JupyterCapabilities>;
+
+    /**
+     * Generate formatted capabilities message with version, path, jupyter version, and kernels
+     *
+     * @param caps - Jupyter capabilities
+     * @param indent - Optional indentation string (default: "")
+     * @returns Promise resolving to formatted capabilities message with indentation
+     */
+    capabilitiesMessage: (
+      caps: JupyterCapabilities,
+      indent?: string,
+    ) => Promise<string>;
+
+    /**
+     * Generate capabilities with kernels list for JSON output
+     *
+     * Enriches capabilities with full kernels array for structured output.
+     * Used by check command JSON output.
+     *
+     * @param caps - Jupyter capabilities
+     * @returns Promise resolving to capabilities with kernels array
+     */
+    capabilitiesJson: (
+      caps: JupyterCapabilities,
+    ) => Promise<JupyterCapabilities & { kernels: JupyterKernelspec[] }>;
+
+    /**
+     * Generate Jupyter installation instructions
+     *
+     * @param caps - Jupyter capabilities (to determine conda vs pip)
+     * @param indent - Optional indentation string (default: "")
+     * @returns Installation message with appropriate package manager
+     */
+    installationMessage: (
+      caps: JupyterCapabilities,
+      indent?: string,
+    ) => string;
+
+    /**
+     * Check for and generate warning about unactivated Python environments
+     *
+     * @param caps - Jupyter capabilities (to check if python is from venv)
+     * @param indent - Optional indentation string (default: "")
+     * @returns Warning message if unactivated env found, undefined otherwise
+     */
+    unactivatedEnvMessage: (
+      caps: JupyterCapabilities,
+      indent?: string,
+    ) => string | undefined;
+
+    /**
+     * Generate Python installation instructions
+     *
+     * @param indent - Optional indentation string (default: "")
+     * @returns Installation message
+     */
+    pythonInstallationMessage: (indent?: string) => string;
+  };
+
+  /**
+   * Format detection utilities
+   */
+  format: {
+    /**
+     * Check if format is HTML compatible
+     *
+     * @param format - Format to check
+     * @returns True if format is HTML compatible
+     */
+    isHtmlCompatible: (format: Format) => boolean;
+
+    /**
+     * Check if format is Jupyter notebook output
+     *
+     * @param format - Format pandoc options to check
+     * @returns True if format is ipynb
+     */
+    isIpynbOutput: (format: FormatPandoc) => boolean;
+
+    /**
+     * Check if format is LaTeX output
+     *
+     * @param format - Format pandoc options to check
+     * @returns True if format is LaTeX (pdf, latex, or beamer)
+     */
+    isLatexOutput: (format: FormatPandoc) => boolean;
+
+    /**
+     * Check if format is markdown output
+     *
+     * @param format - Format to check
+     * @param flavors - Optional array of markdown flavors to check
+     * @returns True if format is markdown
+     */
+    isMarkdownOutput: (format: Format, flavors?: string[]) => boolean;
+
+    /**
+     * Check if format is presentation output
+     *
+     * @param format - Format pandoc options to check
+     * @returns True if format is a presentation format
+     */
+    isPresentationOutput: (format: FormatPandoc) => boolean;
+
+    /**
+     * Check if format is HTML dashboard output
+     *
+     * @param format - Optional format string to check
+     * @returns True if format is a dashboard
+     */
+    isHtmlDashboardOutput: (format?: string) => boolean;
+
+    /**
+     * Check if format is a Shiny server document
+     *
+     * @param format - Optional format to check
+     * @returns True if format has server: shiny
+     */
+    isServerShiny: (format?: Format) => boolean;
+
+    /**
+     * Check if format is a Python Shiny server document with Jupyter engine
+     *
+     * @param format - Format to check
+     * @param engine - Execution engine name
+     * @returns True if format is server: shiny with jupyter engine
+     */
+    isServerShinyPython: (
+      format: Format,
+      engine: string | undefined,
+    ) => boolean;
+  };
+
+  /**
+   * Path manipulation utilities
+   */
+  path: {
+    /**
+     * Convert path to absolute form with platform-specific handling
+     *
+     * Handles URL to file path conversion, makes relative paths absolute,
+     * normalizes the path, and uppercases Windows drive letters.
+     *
+     * @param path - Path string or URL to make absolute
+     * @returns Absolute, normalized path with Windows-specific fixes
+     */
+    absolute: (path: string | URL) => string;
+
+    /**
+     * Convert path to use forward slashes
+     *
+     * @param path - Path with backslashes or forward slashes
+     * @returns Path with only forward slashes
+     */
+    toForwardSlashes: (path: string) => string;
+
+    /**
+     * Get platform-specific runtime directory for Quarto
+     *
+     * Returns the appropriate runtime/state directory based on platform:
+     * - macOS: ~/Library/Caches/quarto/{subdir}
+     * - Windows: %LOCALAPPDATA%/quarto/{subdir}
+     * - Linux: $XDG_RUNTIME_DIR or ~/.local/share/quarto/{subdir}
+     *
+     * Automatically creates the directory if it doesn't exist.
+     *
+     * @param subdir - Optional subdirectory within the runtime directory
+     * @returns Absolute path to the runtime directory
+     */
+    runtime: (subdir?: string) => string;
+
+    /**
+     * Get path to a Quarto resource file
+     *
+     * Returns the path to bundled resource files in Quarto's share directory.
+     * Can accept multiple path segments that will be joined.
+     *
+     * @param parts - Path segments to join (e.g., "julia", "script.jl")
+     * @returns Absolute path to the resource file
+     */
+    resource: (...parts: string[]) => string;
+
+    /**
+     * Split a file path into directory and stem (filename without extension)
+     *
+     * @param file - File path to split
+     * @returns Tuple of [directory, filename stem]
+     */
+    dirAndStem: (file: string) => [string, string];
+
+    /**
+     * Check if a file is a Quarto markdown file (.qmd)
+     *
+     * @param file - File path to check
+     * @returns True if file has .qmd extension
+     */
+    isQmdFile: (file: string) => boolean;
+
+    /**
+     * Get the standard supporting files directory name for an input file
+     *
+     * Returns the conventional `{stem}_files` directory name where Quarto
+     * stores supporting resources (images, data files, etc.) for a document.
+     *
+     * @param input - Input file path
+     * @returns Directory name in format `{stem}_files`
+     * @example
+     * ```typescript
+     * inputFilesDir("/path/to/document.qmd") // returns "document_files"
+     * ```
+     */
+    inputFilesDir: (input: string) => string;
+
+    /**
+     * Get platform-specific user data directory for Quarto
+     *
+     * Returns the appropriate data directory based on platform:
+     * - macOS: ~/Library/Application Support/quarto/{subdir}
+     * - Windows: %LOCALAPPDATA%/quarto/{subdir} (or %APPDATA% if roaming)
+     * - Linux: $XDG_DATA_HOME/quarto/{subdir} or ~/.local/share/quarto/{subdir}
+     *
+     * Automatically creates the directory if it doesn't exist.
+     *
+     * @param subdir - Optional subdirectory within the data directory
+     * @param roaming - Optional flag for Windows roaming profile (default: false)
+     * @returns Absolute path to the data directory
+     */
+    dataDir: (subdir?: string, roaming?: boolean) => string;
+  };
+
+  /**
+   * System and environment detection utilities
+   */
+  system: {
+    /**
+     * Check if running in an interactive session
+     *
+     * Detects if Quarto is running in an interactive environment such as:
+     * - RStudio IDE
+     * - VS Code output channel
+     * - Interactive terminal (TTY)
+     *
+     * @returns True if running in an interactive environment
+     */
+    isInteractiveSession: () => boolean;
+
+    /**
+     * Check if running in a CI/CD environment
+     *
+     * Detects if Quarto is running in a continuous integration environment by checking
+     * for common CI environment variables across 40+ CI/CD platforms including:
+     * - GitHub Actions
+     * - GitLab CI
+     * - Jenkins
+     * - CircleCI
+     * - Travis CI
+     * - And many more
+     *
+     * @returns True if running in a CI/CD environment
+     */
+    runningInCI: () => boolean;
+
+    /**
+     * Execute an external process
+     *
+     * @param options - Process execution options
+     * @param stdin - Optional stdin content
+     * @param mergeOutput - Optional output stream merging
+     * @param stderrFilter - Optional stderr filter function
+     * @param respectStreams - Optional flag to respect stream separation
+     * @param timeout - Optional timeout in milliseconds
+     * @returns Promise resolving to process result
+     */
+    execProcess: (
+      options: ExecProcessOptions,
+      stdin?: string,
+      mergeOutput?: "stderr>stdout" | "stdout>stderr",
+      stderrFilter?: (output: string) => string,
+      respectStreams?: boolean,
+      timeout?: number,
+    ) => Promise<ProcessResult>;
+
+    /**
+     * Run an external preview server
+     *
+     * @param options - Server options including command and ready pattern
+     * @returns PreviewServer instance for managing the server lifecycle
+     */
+    runExternalPreviewServer: (options: {
+      cmd: string[];
+      readyPattern: RegExp;
+      env?: Record<string, string>;
+      cwd?: string;
+    }) => PreviewServer;
+
+    /**
+     * Register a cleanup handler to run on process exit
+     *
+     * @param handler - Function to run on cleanup (can be async)
+     */
+    onCleanup: (handler: () => void | Promise<void>) => void;
+
+    /**
+     * Get global temporary context for managing temporary files and directories
+     *
+     * @returns Global TempContext instance
+     */
+    tempContext: () => TempContext;
+
+    /**
+     * Test-render a document for validation during check operations
+     *
+     * Creates a temporary file with the provided content, renders it with
+     * appropriate engine settings, and returns success/failure status.
+     * Used by checkInstallation implementations to verify engines work.
+     *
+     * @param options - Check render options with content and services
+     * @returns Promise resolving to render result with success status
+     */
+    checkRender: (options: CheckRenderOptions) => Promise<CheckRenderResult>;
+  };
+
+  /**
+   * Text processing utilities
+   */
+  text: {
+    /**
+     * Split text into lines
+     *
+     * @param text - Text to split
+     * @returns Array of lines
+     */
+    lines: (text: string) => string[];
+
+    /**
+     * Trim empty lines from array
+     *
+     * @param lines - Array of lines
+     * @param trim - Which empty lines to trim (default: "all")
+     * @returns Trimmed array of lines
+     */
+    trimEmptyLines: (
+      lines: string[],
+      trim?: "leading" | "trailing" | "all",
+    ) => string[];
+
+    /**
+     * Restore preserved HTML in post-processing
+     *
+     * @param options - Post-processing options including output path and preserve map
+     */
+    postProcessRestorePreservedHtml: (options: PostProcessOptions) => void;
+
+    /**
+     * Convert line/column position to character index
+     *
+     * @param text - Text to search in
+     * @returns Function that converts position to index
+     */
+    lineColToIndex: (
+      text: string,
+    ) => (position: { line: number; column: number }) => number;
+
+    /**
+     * Create a handler for executing inline code
+     *
+     * @param language - Programming language identifier
+     * @param exec - Function to execute code expression
+     * @returns Handler function that processes code strings
+     */
+    executeInlineCodeHandler: (
+      language: string,
+      exec: (expr: string) => string | undefined,
+    ) => (code: string) => string;
+
+    /**
+     * Convert metadata object to YAML text
+     *
+     * @param metadata - Metadata object to convert
+     * @returns YAML formatted string
+     */
+    asYamlText: (metadata: Metadata) => string;
+  };
+
+  /**
+   * Console and UI utilities
+   */
+  console: {
+    /**
+     * Execute an async operation with a spinner displayed in the console
+     *
+     * Shows a spinner with a message while the operation runs, then displays
+     * a completion message when done.
+     *
+     * @param options - Spinner display options
+     * @param fn - Async function to execute
+     * @returns Promise resolving to the function's return value
+     */
+    withSpinner: <T>(
+      options: SpinnerOptions,
+      fn: () => Promise<T>,
+    ) => Promise<T>;
+
+    /**
+     * Display a completion message in the console
+     *
+     * Shows a message with a checkmark indicator (or equivalent) to indicate
+     * successful completion of an operation.
+     *
+     * @param message - Message to display
+     */
+    completeMessage: (message: string) => void;
+
+    /**
+     * Log an informational message to stderr
+     *
+     * Writes an info-level message to stderr using Quarto's custom logging handler.
+     * Supports formatting options like indentation, bold text, and color control.
+     *
+     * @param message - Message to log
+     * @param options - Optional formatting options
+     */
+    info: (message: string, options?: LogMessageOptions) => void;
+
+    /**
+     * Log a warning message to stderr
+     *
+     * Writes a warning-level message to stderr with yellow color and "WARNING:" prefix.
+     * Uses Quarto's custom logging handler.
+     *
+     * @param message - Warning message to log
+     * @param options - Optional formatting options
+     */
+    warning: (message: string, options?: LogMessageOptions) => void;
+
+    /**
+     * Log an error message to stderr
+     *
+     * Writes an error-level message to stderr with bright red color and "ERROR:" prefix.
+     * Uses Quarto's custom logging handler.
+     *
+     * @param message - Error message to log
+     * @param options - Optional formatting options
+     */
+    error: (message: string, options?: LogMessageOptions) => void;
+  };
+
+  /**
+   * Cryptographic utilities
+   */
+  crypto: {
+    /**
+     * Generate MD5 hash of content
+     *
+     * @param content - String content to hash
+     * @returns MD5 hash as hexadecimal string
+     */
+    md5Hash: (content: string) => string;
+  };
+}
+
+/**
+ * Global Quarto API object
+ */
+export declare const quartoAPI: QuartoAPI;
diff --git a/packages/quarto-types/src/render.ts b/packages/quarto-types/src/render.ts
new file mode 100644
index 00000000000..0883f5dcdd1
--- /dev/null
+++ b/packages/quarto-types/src/render.ts
@@ -0,0 +1,88 @@
+/**
+ * Rendering types for Quarto
+ */
+
+import type { Format } from "./format.ts";
+
+/**
+ * Render flags (extends pandoc flags)
+ */
+export interface RenderFlags {
+  // Output options
+  outputDir?: string;
+  siteUrl?: string;
+  executeDir?: string;
+
+  // Execution options
+  execute?: boolean;
+  executeCache?: true | false | "refresh";
+  executeDaemon?: number;
+  executeDaemonRestart?: boolean;
+  executeDebug?: boolean;
+  useFreezer?: boolean;
+
+  // Metadata
+  metadata?: { [key: string]: unknown };
+  pandocMetadata?: { [key: string]: unknown };
+  params?: { [key: string]: unknown };
+  paramsFile?: string;
+
+  // Other flags
+  clean?: boolean;
+  debug?: boolean;
+  quiet?: boolean;
+  version?: string;
+
+  // Pandoc-specific flags (subset)
+  to?: string;
+  output?: string;
+  [key: string]: unknown; // Allow other pandoc flags
+}
+
+/**
+ * Render options (simplified)
+ * Note: The internal Quarto version includes a 'services' field with
+ * RenderServices, which has been omitted as it requires internal dependencies.
+ */
+export interface RenderOptions {
+  flags?: RenderFlags;
+  pandocArgs?: string[];
+  progress?: boolean;
+  useFreezer?: boolean;
+  devServerReload?: boolean;
+  previewServer?: boolean;
+  setProjectDir?: boolean;
+  forceClean?: boolean;
+  echo?: boolean;
+  warning?: boolean;
+  quietPandoc?: boolean;
+}
+
+/**
+ * Result file from rendering
+ */
+export interface RenderResultFile {
+  /** Input file path */
+  input: string;
+
+  /** Markdown content */
+  markdown: string;
+
+  /** Format used for rendering */
+  format: Format;
+
+  /** Output file path */
+  file: string;
+
+  /** Whether this is a transient file */
+  isTransient?: boolean;
+
+  /** Supporting files generated */
+  supporting?: string[];
+
+  /** Resource files */
+  resourceFiles: string[];
+
+  /** Whether this is a supplemental file */
+  supplemental?: boolean;
+}
diff --git a/packages/quarto-types/src/system.ts b/packages/quarto-types/src/system.ts
new file mode 100644
index 00000000000..e3a1c8b139e
--- /dev/null
+++ b/packages/quarto-types/src/system.ts
@@ -0,0 +1,59 @@
+/**
+ * System and process types for Quarto
+ */
+
+/**
+ * Process execution result
+ */
+export interface ProcessResult {
+  success: boolean;
+  code: number;
+  stdout?: string;
+  stderr?: string;
+}
+
+/**
+ * Process execution options
+ */
+export type ExecProcessOptions = {
+  cmd: string;
+  args?: string[];
+  cwd?: string;
+  env?: Record<string, string>;
+  stdout?: "piped" | "inherit" | "null";
+  stderr?: "piped" | "inherit" | "null";
+  stdin?: "piped" | "inherit" | "null";
+};
+
+/**
+ * Preview server interface
+ */
+export interface PreviewServer {
+  /** Start the server and return the URL to browse to */
+  start: () => Promise<string | undefined>;
+  /** Run the server (blocking) */
+  serve: () => Promise<void>;
+  /** Stop the server */
+  stop: () => Promise<void>;
+}
+
+/**
+ * Temporary context for managing temporary files and directories
+ */
+export interface TempContext {
+  /** Base directory for temporary files */
+  baseDir: string;
+  /** Create a temporary file from string content and return its path */
+  createFileFromString: (
+    content: string,
+    options?: { suffix?: string; prefix?: string; dir?: string },
+  ) => string;
+  /** Create a temporary file and return its path */
+  createFile: (options?: { suffix?: string; prefix?: string; dir?: string }) => string;
+  /** Create a temporary directory and return its path */
+  createDir: (options?: { suffix?: string; prefix?: string; dir?: string }) => string;
+  /** Clean up all temporary resources */
+  cleanup: () => void;
+  /** Register a cleanup handler */
+  onCleanup: (handler: VoidFunction) => void;
+}
diff --git a/packages/quarto-types/src/text.ts b/packages/quarto-types/src/text.ts
new file mode 100644
index 00000000000..67378296ee9
--- /dev/null
+++ b/packages/quarto-types/src/text.ts
@@ -0,0 +1,53 @@
+/**
+ * Core text manipulation types for Quarto
+ */
+
+/**
+ * Represents a range within a string
+ */
+export interface Range {
+  start: number;
+  end: number;
+}
+
+/**
+ * A string with source mapping information
+ */
+export interface MappedString {
+  /**
+   * The text content
+   */
+  readonly value: string;
+
+  /**
+   * Optional filename where the content originated
+   */
+  readonly fileName?: string;
+
+  /**
+   * Maps positions in this string back to positions in the original source
+   * @param index Position in the current string
+   * @param closest Whether to find the closest mapping if exact is not available
+   */
+  readonly map: (index: number, closest?: boolean) => StringMapResult;
+}
+
+/**
+ * Result of mapping a position in a mapped string
+ */
+export type StringMapResult = {
+  /**
+   * Position in the original source
+   */
+  index: number;
+
+  /**
+   * Reference to the original mapped string
+   */
+  originalString: MappedString;
+} | undefined;
+
+/**
+ * String that may be mapped or unmapped
+ */
+export type EitherString = string | MappedString;
\ No newline at end of file
diff --git a/packages/quarto-types/tsconfig.json b/packages/quarto-types/tsconfig.json
new file mode 100644
index 00000000000..237ac69389f
--- /dev/null
+++ b/packages/quarto-types/tsconfig.json
@@ -0,0 +1,17 @@
+{
+  "compilerOptions": {
+    "target": "ES2020",
+    "module": "CommonJS",
+    "declaration": true,
+    "outDir": "./dist",
+    "strict": true,
+    "esModuleInterop": true,
+    "skipLibCheck": true,
+    "forceConsistentCasingInFileNames": true,
+    "moduleResolution": "node",
+    "allowImportingTsExtensions": true,
+    "emitDeclarationOnly": true
+  },
+  "include": ["src/**/*.ts"],
+  "exclude": ["node_modules", "dist"]
+}
\ No newline at end of file
diff --git a/src/command/call/build-ts-extension/cmd.ts b/src/command/call/build-ts-extension/cmd.ts
new file mode 100644
index 00000000000..2ce19f96a1d
--- /dev/null
+++ b/src/command/call/build-ts-extension/cmd.ts
@@ -0,0 +1,469 @@
+/*
+ * cmd.ts
+ *
+ * Copyright (C) 2025 Posit Software, PBC
+ */
+
+import { Command } from "cliffy/command/mod.ts";
+import { error, info } from "../../../deno_ral/log.ts";
+import {
+  architectureToolsPath,
+  resourcePath,
+} from "../../../core/resources.ts";
+import { execProcess } from "../../../core/process.ts";
+import { basename, dirname, extname, join } from "../../../deno_ral/path.ts";
+import { existsSync } from "../../../deno_ral/fs.ts";
+import { expandGlobSync } from "../../../core/deno/expand-glob.ts";
+import { readYaml } from "../../../core/yaml.ts";
+import { warning } from "../../../deno_ral/log.ts";
+
+interface DenoConfig {
+  compilerOptions?: Record<string, unknown>;
+  importMap?: string;
+  imports?: Record<string, string>;
+  bundle?: {
+    entryPoint?: string;
+    outputFile?: string;
+    minify?: boolean;
+    sourcemap?: boolean | string;
+  };
+}
+
+interface BuildOptions {
+  check?: boolean;
+  initConfig?: boolean;
+}
+
+async function resolveConfig(): Promise<
+  { config: DenoConfig; configPath: string }
+> {
+  // Look for deno.json in current directory
+  const cwd = Deno.cwd();
+  const userConfigPath = join(cwd, "deno.json");
+
+  if (existsSync(userConfigPath)) {
+    info(`Using config: ${userConfigPath}`);
+    const content = Deno.readTextFileSync(userConfigPath);
+    const config = JSON.parse(content) as DenoConfig;
+
+    // Validate that both importMap and imports are not present
+    if (config.importMap && config.imports) {
+      error('deno.json contains both "importMap" and "imports"\n');
+      error(
+        'deno.json can use either "importMap" (path to file) OR "imports" (inline mappings), but not both.\n',
+      );
+      error("Please remove one of these fields from your deno.json.");
+      Deno.exit(1);
+    }
+
+    return { config, configPath: userConfigPath };
+  }
+
+  // Fall back to Quarto's default config
+  const defaultConfigPath = resourcePath("extension-build/deno.json");
+
+  if (!existsSync(defaultConfigPath)) {
+    error("Could not find default extension-build configuration.\n");
+    error("This may indicate that Quarto was not built correctly.");
+    error("Expected config at: " + defaultConfigPath);
+    Deno.exit(1);
+  }
+
+  info(`Using default config: ${defaultConfigPath}`);
+  const content = Deno.readTextFileSync(defaultConfigPath);
+  const config = JSON.parse(content) as DenoConfig;
+
+  return { config, configPath: defaultConfigPath };
+}
+
+async function autoDetectEntryPoint(
+  configEntryPoint?: string,
+): Promise<string> {
+  // If config specifies entry point, use it (check this first, before src/ validation)
+  if (configEntryPoint) {
+    if (!existsSync(configEntryPoint)) {
+      error(
+        `Entry point specified in deno.json does not exist: ${configEntryPoint}`,
+      );
+      Deno.exit(1);
+    }
+    return configEntryPoint;
+  }
+
+  const srcDir = "src";
+
+  // Check if src/ exists (only needed for auto-detection)
+  if (!existsSync(srcDir)) {
+    error("No src/ directory found.\n");
+    error("Create a TypeScript file in src/:");
+    error("  mkdir -p src");
+    error("  touch src/my-engine.ts\n");
+    error("Or specify entry point as argument:");
+    error("  quarto call build-ts-extension src/my-engine.ts\n");
+
+    // Only show deno.json config if it already exists
+    if (existsSync("deno.json")) {
+      error("Or configure in deno.json:");
+      error("  {");
+      error('    "bundle": {');
+      error('      "entryPoint": "path/to/file.ts"');
+      error("    }");
+      error("  }");
+    }
+    Deno.exit(1);
+  }
+
+  // Find .ts files in src/
+  const tsFiles: string[] = [];
+  for await (const entry of Deno.readDir(srcDir)) {
+    if (entry.isFile && entry.name.endsWith(".ts")) {
+      tsFiles.push(entry.name);
+    }
+  }
+
+  // Resolution logic
+  if (tsFiles.length === 0) {
+    error("No .ts files found in src/\n");
+    error("Create a TypeScript file:");
+    error("  touch src/my-engine.ts");
+    Deno.exit(1);
+  }
+
+  if (tsFiles.length === 1) {
+    return join(srcDir, tsFiles[0]);
+  }
+
+  // Multiple files - require mod.ts
+  if (tsFiles.includes("mod.ts")) {
+    return join(srcDir, "mod.ts");
+  }
+
+  error(`Multiple .ts files found in src/: ${tsFiles.join(", ")}\n`);
+  error("Specify entry point as argument:");
+  error("  quarto call build-ts-extension src/my-engine.ts\n");
+  error("Or rename one file to mod.ts:");
+  error(`  mv src/${tsFiles[0]} src/mod.ts\n`);
+
+  // Only show deno.json config if it already exists
+  if (existsSync("deno.json")) {
+    error("Or configure in deno.json:");
+    error("  {");
+    error('    "bundle": {');
+    error('      "entryPoint": "src/my-engine.ts"');
+    error("    }");
+    error("  }");
+  }
+
+  Deno.exit(1);
+}
+
+function inferFilename(entryPoint: string): string {
+  // Get the base name without extension, add .js
+  const fileName = basename(entryPoint, extname(entryPoint));
+  return `${fileName}.js`;
+}
+
+function inferOutputPath(
+  outputFilename: string,
+  userSpecifiedFilename?: string,
+): string {
+  // Derive extension name from filename for error messages
+  const extensionName = basename(outputFilename, extname(outputFilename));
+
+  // Find the extension directory by looking for _extension.yml
+  const extensionsDir = "_extensions";
+  if (!existsSync(extensionsDir)) {
+    error("No _extensions/ directory found.\n");
+
+    if (userSpecifiedFilename) {
+      // User specified a filename in deno.json - offer path prefix option
+      error(
+        `You specified outputFile: "${userSpecifiedFilename}" in deno.json.`,
+      );
+      error("To write to the current directory, use a path prefix:");
+      error(`  "outputFile": "./${userSpecifiedFilename}"\n`);
+      error("Or create an extension structure:");
+    } else {
+      // Auto-detection mode - standard error
+      error(
+        "Extension projects must have an _extensions/ directory with _extension.yml.",
+      );
+      error("Create the extension structure:");
+    }
+
+    error(`  mkdir -p _extensions/${extensionName}`);
+    error(`  touch _extensions/${extensionName}/_extension.yml`);
+    Deno.exit(1);
+  }
+
+  // Find all _extension.yml files using glob pattern
+  const extensionYmlFiles: string[] = [];
+  for (const entry of expandGlobSync("_extensions/**/_extension.yml")) {
+    extensionYmlFiles.push(dirname(entry.path));
+  }
+
+  if (extensionYmlFiles.length === 0) {
+    error("No _extension.yml found in _extensions/ subdirectories.\n");
+    error(
+      "Extension projects must have _extension.yml in a subdirectory of _extensions/.",
+    );
+    error("Create the extension metadata:");
+    error(`  touch _extensions/${extensionName}/_extension.yml`);
+    Deno.exit(1);
+  }
+
+  if (extensionYmlFiles.length > 1) {
+    const extensionNames = extensionYmlFiles.map((path) =>
+      path.replace("_extensions/", "")
+    );
+    error(
+      `Multiple extension directories found: ${extensionNames.join(", ")}\n`,
+    );
+
+    if (existsSync("deno.json")) {
+      // User already has deno.json - show them how to configure it
+      // Use relative path in example (strip absolute path prefix)
+      const relativeExtPath = extensionYmlFiles[0].replace(
+        /^.*\/_extensions\//,
+        "_extensions/",
+      );
+      error("Specify the output path in deno.json:");
+      error("  {");
+      error('    "bundle": {');
+      error(`      "outputFile": "${relativeExtPath}/${outputFilename}"`);
+      error("    }");
+      error("  }");
+    } else {
+      // No deno.json - guide them to create one if this is intentional
+      error("This tool doesn't currently support multi-extension projects.");
+      error(
+        "Use `quarto call build-ts-extension --init-config` to create a deno.json if this is intentional.",
+      );
+    }
+    Deno.exit(1);
+  }
+
+  // Use the single extension directory found
+  return join(extensionYmlFiles[0], outputFilename);
+}
+
+async function bundle(
+  entryPoint: string,
+  config: DenoConfig,
+  configPath: string,
+): Promise<void> {
+  info("Bundling...");
+
+  const denoBinary = Deno.env.get("QUARTO_DENO") ||
+    architectureToolsPath("deno");
+
+  // Determine output path
+  let outputPath: string;
+  if (config.bundle?.outputFile) {
+    const specifiedOutput = config.bundle.outputFile;
+    // Check if it's just a filename (no path separators)
+    if (!specifiedOutput.includes("/") && !specifiedOutput.includes("\\")) {
+      // Just filename - infer directory from _extension.yml
+      // Pass the user-specified filename for better error messages
+      outputPath = inferOutputPath(specifiedOutput, specifiedOutput);
+    } else {
+      // Full path specified - use as-is
+      outputPath = specifiedOutput;
+    }
+  } else {
+    // Nothing specified - infer both directory and filename
+    const filename = inferFilename(entryPoint);
+    outputPath = inferOutputPath(filename);
+  }
+
+  // Ensure output directory exists
+  const outputDir = dirname(outputPath);
+  if (!existsSync(outputDir)) {
+    Deno.mkdirSync(outputDir, { recursive: true });
+  }
+
+  // Build deno bundle arguments
+  const args = [
+    "bundle",
+    `--config=${configPath}`,
+    `--output=${outputPath}`,
+    entryPoint,
+  ];
+
+  // Add optional flags
+  if (config.bundle?.minify) {
+    args.push("--minify");
+  }
+
+  if (config.bundle?.sourcemap) {
+    const sourcemapValue = config.bundle.sourcemap;
+    if (typeof sourcemapValue === "string") {
+      args.push(`--sourcemap=${sourcemapValue}`);
+    } else {
+      args.push("--sourcemap");
+    }
+  }
+
+  const result = await execProcess({
+    cmd: denoBinary,
+    args,
+    cwd: Deno.cwd(),
+  });
+
+  if (!result.success) {
+    error("deno bundle failed");
+    if (result.stderr) {
+      error(result.stderr);
+    }
+    Deno.exit(1);
+  }
+
+  // Validate that _extension.yml path matches output filename
+  validateExtensionYml(outputPath);
+
+  info(`✓ Built ${entryPoint} → ${outputPath}`);
+}
+
+function validateExtensionYml(outputPath: string): void {
+  // Find _extension.yml in the same directory as output
+  const extensionDir = dirname(outputPath);
+  const extensionYmlPath = join(extensionDir, "_extension.yml");
+
+  if (!existsSync(extensionYmlPath)) {
+    return; // No _extension.yml, can't validate
+  }
+
+  try {
+    const yml = readYaml(extensionYmlPath);
+    const engines = yml?.contributes?.engines;
+
+    if (Array.isArray(engines)) {
+      const outputFilename = basename(outputPath);
+
+      for (const engine of engines) {
+        const enginePath = typeof engine === "string" ? engine : engine?.path;
+        if (enginePath && enginePath !== outputFilename) {
+          warning(
+            `_extension.yml specifies engine path "${enginePath}" but built file is "${outputFilename}"`,
+          );
+          warning(`  Update _extension.yml to: path: ${outputFilename}`);
+        }
+      }
+    }
+  } catch {
+    // Ignore YAML parsing errors
+  }
+}
+
+async function initializeConfig(): Promise<void> {
+  const configPath = "deno.json";
+
+  // Check if deno.json already exists
+  if (existsSync(configPath)) {
+    const importMapPath = resourcePath("extension-build/import-map.json");
+    error("deno.json already exists\n");
+    error("To use Quarto's default config, remove the existing deno.json.");
+    error("Or manually add the importMap to your existing config:");
+    info(`  "importMap": "${importMapPath}"`);
+    Deno.exit(1);
+  }
+
+  // Get absolute path to Quarto's import map
+  const importMapPath = resourcePath("extension-build/import-map.json");
+
+  // Create minimal config
+  const config = {
+    compilerOptions: {
+      strict: true,
+      lib: ["deno.ns", "DOM", "ES2021"],
+    },
+    importMap: importMapPath,
+  };
+
+  // Write deno.json
+  Deno.writeTextFileSync(
+    configPath,
+    JSON.stringify(config, null, 2) + "\n",
+  );
+
+  // Inform user
+  info("✓ Created deno.json");
+  info(`  Import map: ${importMapPath}`);
+  info("");
+  info("Customize as needed:");
+  info('  - Add "bundle" section for build options:');
+  info('      "entryPoint": "src/my-engine.ts"');
+  info('      "outputFile": "_extensions/my-engine/my-engine.js"');
+  info('      "minify": true');
+  info('      "sourcemap": true');
+  info('  - Modify "compilerOptions" for type-checking behavior');
+}
+
+export const buildTsExtensionCommand = new Command()
+  .name("build-ts-extension")
+  .arguments("[entry-point:string]")
+  .description(
+    "Build TypeScript execution engine extensions.\n\n" +
+      "This command type-checks and bundles TypeScript extensions " +
+      "into single JavaScript files using Quarto's bundled deno bundle.\n\n" +
+      "The entry point is determined by:\n" +
+      "  1. [entry-point] command-line argument (if specified)\n" +
+      "  2. bundle.entryPoint in deno.json (if specified)\n" +
+      "  3. Single .ts file in src/ directory\n" +
+      "  4. src/mod.ts (if multiple .ts files exist)",
+  )
+  .option("--check", "Type-check only (skip bundling)")
+  .option(
+    "--init-config",
+    "Generate deno.json with absolute importMap path",
+  )
+  .action(async (options: BuildOptions, entryPointArg?: string) => {
+    try {
+      // Handle --init-config flag first (don't build)
+      if (options.initConfig) {
+        await initializeConfig();
+        return;
+      }
+
+      // 1. Resolve configuration
+      const { config, configPath } = await resolveConfig();
+
+      // 2. Resolve entry point (CLI arg takes precedence)
+      const entryPoint = entryPointArg ||
+        await autoDetectEntryPoint(
+          config.bundle?.entryPoint,
+        );
+      info(`Entry point: ${entryPoint}`);
+
+      // 3. Type-check or bundle
+      if (options.check) {
+        // Just type-check
+        info("Type-checking...");
+        const denoBinary = Deno.env.get("QUARTO_DENO") ||
+          architectureToolsPath("deno");
+        const result = await execProcess({
+          cmd: denoBinary,
+          args: ["check", `--config=${configPath}`, entryPoint],
+          cwd: Deno.cwd(),
+        });
+        if (!result.success) {
+          error("Type check failed\n");
+          error(
+            "See errors above. Fix type errors in your code or adjust compilerOptions in deno.json.",
+          );
+          Deno.exit(1);
+        }
+        info("✓ Type check passed");
+      } else {
+        // Type-check and bundle (deno bundle does both)
+        await bundle(entryPoint, config, configPath);
+      }
+    } catch (e) {
+      if (e instanceof Error) {
+        error(e.message);
+      } else {
+        error(String(e));
+      }
+      Deno.exit(1);
+    }
+  });
diff --git a/src/command/call/cmd.ts b/src/command/call/cmd.ts
index 1fd10c50b6a..de8d6255197 100644
--- a/src/command/call/cmd.ts
+++ b/src/command/call/cmd.ts
@@ -1,10 +1,15 @@
 import { Command } from "cliffy/command/mod.ts";
 import { engineCommand } from "../../execute/engine.ts";
+import { buildTsExtensionCommand } from "./build-ts-extension/cmd.ts";
 
 export const callCommand = new Command()
   .name("call")
-  .description("Access functions of Quarto subsystems such as its rendering engines.")
+  .description(
+    "Access functions of Quarto subsystems such as its rendering engines.",
+  )
   .action(() => {
     callCommand.showHelp();
     Deno.exit(1);
-  }).command("engine", engineCommand);
+  })
+  .command("engine", engineCommand)
+  .command("build-ts-extension", buildTsExtensionCommand);
diff --git a/src/command/check/check-render.ts b/src/command/check/check-render.ts
new file mode 100644
index 00000000000..935cb45d690
--- /dev/null
+++ b/src/command/check/check-render.ts
@@ -0,0 +1,61 @@
+/*
+ * check-render.ts
+ *
+ * Copyright (C) 2020-2022 Posit Software, PBC
+ */
+
+import { render } from "../render/render-shared.ts";
+import type { RenderServiceWithLifetime } from "../render/types.ts";
+
+/**
+ * Options for test-rendering a document during check operations
+ */
+export interface CheckRenderOptions {
+  /** Markdown content to render */
+  content: string;
+  /** Language identifier (e.g., "python", "r", "julia") */
+  language: string;
+  /** Render services for temp file management and rendering */
+  services: RenderServiceWithLifetime;
+}
+
+/**
+ * Result of a check render operation
+ */
+export interface CheckRenderResult {
+  /** Whether the render succeeded */
+  success: boolean;
+  /** Error if render failed */
+  error?: Error;
+}
+
+/**
+ * Test-render a document for validation during check operations
+ *
+ * Creates a temporary file with the provided content, renders it with
+ * appropriate engine settings, and returns success/failure status.
+ * Used by checkInstallation implementations to verify engines work.
+ */
+export async function checkRender(
+  options: CheckRenderOptions,
+): Promise<CheckRenderResult> {
+  const { content, services } = options;
+
+  // Create temporary file
+  const tempFile = services.temp.createFile({ suffix: ".qmd" });
+
+  // Write content to file
+  Deno.writeTextFileSync(tempFile, content);
+
+  // Render with appropriate flags
+  const result = await render(tempFile, {
+    services,
+    flags: { quiet: true, executeDaemon: 0 },
+  });
+
+  // Return simplified result
+  return {
+    success: !result.error,
+    error: result.error,
+  };
+}
diff --git a/src/command/check/check.ts b/src/command/check/check.ts
index 9a7aaaa5606..9108fa50665 100644
--- a/src/command/check/check.ts
+++ b/src/command/check/check.ts
@@ -9,24 +9,7 @@ import { info } from "../../deno_ral/log.ts";
 import { render } from "../render/render-shared.ts";
 import { renderServices } from "../render/render-services.ts";
 
-import { JupyterCapabilities } from "../../core/jupyter/types.ts";
-import { jupyterCapabilities } from "../../core/jupyter/capabilities.ts";
-import {
-  jupyterCapabilitiesJson,
-  jupyterCapabilitiesMessage,
-  jupyterInstallationMessage,
-  jupyterUnactivatedEnvMessage,
-  pythonInstallationMessage,
-} from "../../core/jupyter/jupyter-shared.ts";
 import { completeMessage, withSpinner } from "../../core/console.ts";
-import {
-  checkRBinary,
-  KnitrCapabilities,
-  knitrCapabilities,
-  knitrCapabilitiesMessage,
-  knitrInstallationMessage,
-  rInstallationMessage,
-} from "../../core/knitr.ts";
 import { quartoConfig } from "../../core/quarto.ts";
 import {
   cacheCodePage,
@@ -34,7 +17,6 @@ import {
   readCodePage,
 } from "../../core/windows.ts";
 import { RenderServiceWithLifetime } from "../render/types.ts";
-import { jupyterKernelspecForLanguage } from "../../core/jupyter/kernels.ts";
 import { execProcess } from "../../core/process.ts";
 import { pandocBinaryPath } from "../../core/resources.ts";
 import { lines } from "../../core/text.ts";
@@ -50,23 +32,27 @@ import { quartoCacheDir } from "../../core/appdirs.ts";
 import { isWindows } from "../../deno_ral/platform.ts";
 import { makeStringEnumTypeEnforcer } from "../../typing/dynamic.ts";
 import { findChrome } from "../../core/puppeteer.ts";
+import { executionEngines } from "../../execute/engine.ts";
 
-export const kTargets = [
-  "install",
-  "info",
-  "jupyter",
-  "knitr",
-  "versions",
-  "all",
-] as const;
-export type Target = typeof kTargets[number];
-export const enforceTargetType = makeStringEnumTypeEnforcer(...kTargets);
+export function getTargets(): readonly string[] {
+  const checkableEngineNames = executionEngines()
+    .filter((engine) => engine.checkInstallation)
+    .map((engine) => engine.name);
+
+  return ["install", "info", ...checkableEngineNames, "versions", "all"];
+}
+
+export type Target = string;
+export function enforceTargetType(value: unknown): Target {
+  const targets = getTargets();
+  return makeStringEnumTypeEnforcer(...targets)(value);
+}
 
 const kIndent = "      ";
 
 type CheckJsonResult = Record<string, unknown>;
 
-type CheckConfiguration = {
+export type CheckConfiguration = {
   strict: boolean;
   target: Target;
   output: string | undefined;
@@ -110,13 +96,12 @@ export async function check(
     }
     checkInfoMsg(conf, `Quarto ${quartoConfig.version()}`);
 
+    // Fixed checks (non-engine)
     for (
       const [name, checker] of [
         ["info", checkInfo],
         ["versions", checkVersions],
         ["install", checkInstall],
-        ["jupyter", checkJupyterInstallation],
-        ["knitr", checkKnitrInstallation],
       ] as const
     ) {
       if (target === name || target === "all") {
@@ -124,6 +109,15 @@ export async function check(
       }
     }
 
+    // Dynamic engine checks
+    for (const engine of executionEngines()) {
+      if (
+        engine.checkInstallation && (target === engine.name || target === "all")
+      ) {
+        await engine.checkInstallation(conf);
+      }
+    }
+
     if (conf.jsonResult && conf.output) {
       await Deno.writeTextFile(
         conf.output,
@@ -531,232 +525,3 @@ title: "Title"
     }, markdownRenderCb);
   }
 }
-
-async function checkJupyterInstallation(conf: CheckConfiguration) {
-  const kMessage = "Checking Python 3 installation....";
-  const jupyterJson: Record<string, unknown> = {};
-  if (conf.jsonResult) {
-    (conf.jsonResult.tools as Record<string, unknown>).jupyter = jupyterJson;
-  }
-  let caps: JupyterCapabilities | undefined;
-  if (conf.jsonResult) {
-    caps = await jupyterCapabilities();
-  } else {
-    await withSpinner({
-      message: kMessage,
-      doneMessage: false,
-    }, async () => {
-      caps = await jupyterCapabilities();
-    });
-  }
-  if (caps) {
-    checkCompleteMessage(conf, kMessage + "OK");
-    if (conf.jsonResult) {
-      jupyterJson["capabilities"] = await jupyterCapabilitiesJson(caps);
-    } else {
-      checkInfoMsg(conf, await jupyterCapabilitiesMessage(caps, kIndent));
-    }
-    checkInfoMsg(conf, "");
-    if (caps.jupyter_core) {
-      if (await jupyterKernelspecForLanguage("python")) {
-        const kJupyterMessage = "Checking Jupyter engine render....";
-        if (conf.jsonResult) {
-          await checkJupyterRender(conf);
-        } else {
-          await withSpinner({
-            message: kJupyterMessage,
-            doneMessage: kJupyterMessage + "OK\n",
-          }, async () => {
-            await checkJupyterRender(conf);
-          });
-        }
-      } else {
-        jupyterJson["kernels"] = [];
-        checkInfoMsg(
-          conf,
-          kIndent + "NOTE: No Jupyter kernel for Python found",
-        );
-        checkInfoMsg(conf, "");
-      }
-    } else {
-      const installMessage = jupyterInstallationMessage(caps, kIndent);
-      checkInfoMsg(conf, installMessage);
-      checkInfoMsg(conf, "");
-      jupyterJson["installed"] = false;
-      jupyterJson["how-to-install"] = installMessage;
-      const envMessage = jupyterUnactivatedEnvMessage(caps, kIndent);
-      if (envMessage) {
-        checkInfoMsg(conf, envMessage);
-        checkInfoMsg(conf, "");
-        jupyterJson["env"] = {
-          "warning": envMessage,
-        };
-      }
-    }
-  } else {
-    checkCompleteMessage(conf, kMessage + "(None)\n");
-    const msg = pythonInstallationMessage(kIndent);
-    jupyterJson["installed"] = false;
-    jupyterJson["how-to-install-python"] = msg;
-    checkInfoMsg(conf, msg);
-    checkInfoMsg(conf, "");
-  }
-}
-
-async function checkJupyterRender(conf: CheckConfiguration) {
-  const {
-    services,
-  } = conf;
-  const json: Record<string, unknown> = {};
-  if (conf.jsonResult) {
-    (conf.jsonResult.render as Record<string, unknown>).jupyter = json;
-  }
-  const qmdPath = services.temp.createFile({ suffix: "check.qmd" });
-  Deno.writeTextFileSync(
-    qmdPath,
-    `
----
-title: "Title"
----
-
-## Header
-
-\`\`\`{python}
-1 + 1
-\`\`\`
-`,
-  );
-  const result = await render(qmdPath, {
-    services,
-    flags: { quiet: true, executeDaemon: 0 },
-  });
-  if (result.error) {
-    if (!conf.jsonResult) {
-      throw result.error;
-    } else {
-      json["error"] = result.error;
-    }
-  } else {
-    json["ok"] = true;
-  }
-}
-
-async function checkKnitrInstallation(conf: CheckConfiguration) {
-  const kMessage = "Checking R installation...........";
-  let caps: KnitrCapabilities | undefined;
-  let rBin: string | undefined;
-  const json: Record<string, unknown> = {};
-  if (conf.jsonResult) {
-    (conf.jsonResult.tools as Record<string, unknown>).knitr = json;
-  }
-  const knitrCb = async () => {
-    rBin = await checkRBinary();
-    caps = await knitrCapabilities(rBin);
-  };
-  if (conf.jsonResult) {
-    await knitrCb();
-  } else {
-    await withSpinner({
-      message: kMessage,
-      doneMessage: false,
-    }, knitrCb);
-  }
-  if (rBin && caps) {
-    checkCompleteMessage(conf, kMessage + "OK");
-    checkInfoMsg(conf, knitrCapabilitiesMessage(caps, kIndent));
-    checkInfoMsg(conf, "");
-    if (caps.packages.rmarkdownVersOk && caps.packages.knitrVersOk) {
-      const kKnitrMessage = "Checking Knitr engine render......";
-      if (conf.jsonResult) {
-        await checkKnitrRender(conf);
-      } else {
-        await withSpinner({
-          message: kKnitrMessage,
-          doneMessage: kKnitrMessage + "OK\n",
-        }, async () => {
-          await checkKnitrRender(conf);
-        });
-      }
-    } else {
-      // show install message if not available
-      // or update message if not up to date
-      json["installed"] = false;
-      if (!caps.packages.knitr || !caps.packages.knitrVersOk) {
-        const msg = knitrInstallationMessage(
-          kIndent,
-          "knitr",
-          !!caps.packages.knitr && !caps.packages.knitrVersOk,
-        );
-        checkInfoMsg(conf, msg);
-        json["how-to-install-knitr"] = msg;
-      }
-      if (!caps.packages.rmarkdown || !caps.packages.rmarkdownVersOk) {
-        const msg = knitrInstallationMessage(
-          kIndent,
-          "rmarkdown",
-          !!caps.packages.rmarkdown && !caps.packages.rmarkdownVersOk,
-        );
-        checkInfoMsg(conf, msg);
-        json["how-to-install-rmarkdown"] = msg;
-      }
-      checkInfoMsg(conf, "");
-    }
-  } else if (rBin === undefined) {
-    checkCompleteMessage(conf, kMessage + "(None)\n");
-    const msg = rInstallationMessage(kIndent);
-    checkInfoMsg(conf, msg);
-    json["installed"] = false;
-    checkInfoMsg(conf, "");
-  } else if (caps === undefined) {
-    json["installed"] = false;
-    checkCompleteMessage(conf, kMessage + "(None)\n");
-    const msgs = [
-      `R succesfully found at ${rBin}.`,
-      "However, a problem was encountered when checking configurations of packages.",
-      "Please check your installation of R.",
-    ];
-    msgs.forEach((msg) => {
-      checkInfoMsg(conf, msg);
-    });
-    json["error"] = msgs.join("\n");
-    checkInfoMsg(conf, "");
-  }
-}
-
-async function checkKnitrRender(conf: CheckConfiguration) {
-  const {
-    services,
-  } = conf;
-  const json: Record<string, unknown> = {};
-  if (conf.jsonResult) {
-    (conf.jsonResult.render as Record<string, unknown>).knitr = json;
-  }
-  const rmdPath = services.temp.createFile({ suffix: "check.rmd" });
-  Deno.writeTextFileSync(
-    rmdPath,
-    `
----
-title: "Title"
----
-
-## Header
-
-\`\`\`{r}
-1 + 1
-\`\`\`
-`,
-  );
-  const result = await render(rmdPath, {
-    services,
-    flags: { quiet: true },
-  });
-  if (result.error) {
-    if (!conf.jsonResult) {
-      throw result.error;
-    } else {
-      json["error"] = result.error;
-    }
-  } else {
-    json["ok"] = true;
-  }
-}
diff --git a/src/command/check/cmd.ts b/src/command/check/cmd.ts
index 124d0aa6dc8..d08e49dd4c2 100644
--- a/src/command/check/cmd.ts
+++ b/src/command/check/cmd.ts
@@ -26,8 +26,19 @@ export const checkCommand = new Command()
   // deno-lint-ignore no-explicit-any
   .action(async (options: any, targetStr?: string) => {
     targetStr = targetStr || "all";
+
+    // Initialize project context and register external engines
+    // Dynamic import to avoid static import chain that triggers esbuild bundling issues
+    const { initializeProjectContextAndEngines } = await import(
+      "../command-utils.ts"
+    );
+    await initializeProjectContextAndEngines();
+
+    // Validate target (now that all engines including external ones are loaded)
+    const target = enforceTargetType(targetStr);
+
     await check(
-      enforceTargetType(targetStr),
+      target,
       options.strict,
       options.output,
     );
diff --git a/src/command/command-utils.ts b/src/command/command-utils.ts
new file mode 100644
index 00000000000..c649a50c9a9
--- /dev/null
+++ b/src/command/command-utils.ts
@@ -0,0 +1,76 @@
+/*
+ * command-utils.ts
+ *
+ * Copyright (C) 2020-2022 Posit Software, PBC
+ */
+
+import { initYamlIntelligenceResourcesFromFilesystem } from "../core/schema/utils.ts";
+import type { ProjectContext } from "../project/types.ts";
+
+/**
+ * Create a minimal "zero-file" project context for loading bundled engine extensions
+ * when no actual project or file exists.
+ *
+ * This is needed for commands like `quarto check julia` that run outside any project
+ * but still need access to bundled engines. The context provides just enough structure
+ * to discover and register bundled engine extensions.
+ *
+ * @param dir - Directory to use as the base (defaults to current working directory)
+ * @returns A minimal ProjectContext with bundled engines loaded
+ */
+async function zeroFileProjectContext(dir?: string): Promise<ProjectContext> {
+  const { createExtensionContext } = await import(
+    "../extension/extension.ts"
+  );
+  const { resolveEngineExtensions } = await import(
+    "../project/project-context.ts"
+  );
+
+  const extensionContext = createExtensionContext();
+  const config = await resolveEngineExtensions(
+    extensionContext,
+    { project: {} },
+    dir || Deno.cwd(),
+  );
+
+  // Return a minimal project context with the resolved engine config
+  return {
+    dir: dir || Deno.cwd(),
+    config,
+  } as ProjectContext;
+}
+
+/**
+ * Initialize project context and register external engines from project config.
+ *
+ * This consolidates the common pattern of:
+ * 1. Loading YAML intelligence resources
+ * 2. Creating project context
+ * 3. Registering external engines via reorderEngines()
+ *
+ * If no project is found, a zero-file context is created to load bundled engine
+ * extensions (like Julia), ensuring they're available for commands like `quarto check julia`.
+ *
+ * @param dir - Optional directory path (defaults to current working directory)
+ */
+export async function initializeProjectContextAndEngines(
+  dir?: string,
+): Promise<void> {
+  // Dynamic imports to avoid async module initialization chain in bundle
+  const { projectContext } = await import("../project/project-context.ts");
+  const { notebookContext } = await import(
+    "../render/notebook/notebook-context.ts"
+  );
+  const { reorderEngines } = await import("../execute/engine.ts");
+
+  // Initialize YAML intelligence resources (required for project context)
+  await initYamlIntelligenceResourcesFromFilesystem();
+
+  // Load project context if we're in a project directory, or create a zero-file
+  // context to load bundled engines when no project exists
+  const context = await projectContext(dir || Deno.cwd(), notebookContext()) ||
+    await zeroFileProjectContext(dir);
+
+  // Register external engines from project config
+  await reorderEngines(context);
+}
diff --git a/src/command/create/artifacts/artifact-shared.ts b/src/command/create/artifacts/artifact-shared.ts
index 08a2b4b7621..68fadb83295 100644
--- a/src/command/create/artifacts/artifact-shared.ts
+++ b/src/command/create/artifacts/artifact-shared.ts
@@ -145,6 +145,8 @@ export async function ejsData(
     author: author.trim(),
     version,
     quartoversion,
+    cellLanguage: (createDirective.options?.cellLanguage as string) ||
+      filesafename,
   };
 }
 
diff --git a/src/command/create/artifacts/extension.ts b/src/command/create/artifacts/extension.ts
index 6b951eccbc5..2adc5f220f4 100644
--- a/src/command/create/artifacts/extension.ts
+++ b/src/command/create/artifacts/extension.ts
@@ -15,12 +15,13 @@ import { ejsData, renderAndCopyArtifacts } from "./artifact-shared.ts";
 import { resourcePath } from "../../../core/resources.ts";
 
 import { Input, Select } from "cliffy/prompt/mod.ts";
-import { join } from "../../../deno_ral/path.ts";
-import { existsSync } from "../../../deno_ral/fs.ts";
+import { dirname, join } from "../../../deno_ral/path.ts";
+import { copySync, ensureDirSync, existsSync } from "../../../deno_ral/fs.ts";
 
 const kType = "type";
 const kSubType = "subtype";
 const kName = "name";
+const kCellLanguage = "cellLanguage";
 
 const kTypeExtension = "extension";
 
@@ -42,6 +43,7 @@ const kExtensionTypes: Array<string | ExtensionType> = [
   { name: "custom format", value: "format", openfiles: ["template.qmd"] },
   { name: "metadata", value: "metadata", openfiles: [] },
   { name: "brand", value: "brand", openfiles: [] },
+  { name: "engine", value: "engine", openfiles: ["example.qmd"] },
 ];
 
 const kExtensionSubtypes: Record<string, string[]> = {
@@ -63,8 +65,10 @@ export const extensionArtifactCreator: ArtifactCreator = {
 function resolveOptions(args: string[]): Record<string, unknown> {
   // The first argument is the extension type
   // The second argument is the name
+  // The third argument is the cell language (for engine extensions)
   const typeRaw = args.length > 0 ? args[0] : undefined;
   const nameRaw = args.length > 1 ? args[1] : undefined;
+  const cellLanguageRaw = args.length > 2 ? args[2] : undefined;
 
   const options: Record<string, unknown> = {};
 
@@ -80,6 +84,11 @@ function resolveOptions(args: string[]): Record<string, unknown> {
     options[kName] = nameRaw;
   }
 
+  // For engine type, populate the cell language if provided
+  if (cellLanguageRaw && options[kType] === "engine") {
+    options[kCellLanguage] = cellLanguageRaw;
+  }
+
   return options;
 }
 
@@ -124,6 +133,7 @@ function finalizeOptions(createOptions: CreateContext) {
       createOptions.options[kName] as string,
     ),
     template,
+    options: createOptions.options,
   } as CreateDirective;
 }
 
@@ -172,6 +182,19 @@ function nextPrompt(
       type: Input,
     };
   }
+
+  // Collect cell language for engine extensions
+  if (
+    createOptions.options[kType] === "engine" &&
+    !createOptions.options[kCellLanguage]
+  ) {
+    return {
+      name: kCellLanguage,
+      message: "Default cell language name",
+      type: Input,
+      default: createOptions.options[kName] as string,
+    };
+  }
 }
 
 function typeFromTemplate(template: string) {
diff --git a/src/command/dev-call/cmd.ts b/src/command/dev-call/cmd.ts
index 30f3346a75d..b9a07f44b9b 100644
--- a/src/command/dev-call/cmd.ts
+++ b/src/command/dev-call/cmd.ts
@@ -5,6 +5,7 @@ import { buildJsCommand } from "./build-artifacts/cmd.ts";
 import { validateYamlCommand } from "./validate-yaml/cmd.ts";
 import { showAstTraceCommand } from "./show-ast-trace/cmd.ts";
 import { makeAstDiagramCommand } from "./make-ast-diagram/cmd.ts";
+import { pullGitSubtreeCommand } from "./pull-git-subtree/cmd.ts";
 
 type CommandOptionInfo = {
   name: string;
@@ -75,4 +76,5 @@ export const devCallCommand = new Command()
   .command("validate-yaml", validateYamlCommand)
   .command("build-artifacts", buildJsCommand)
   .command("show-ast-trace", showAstTraceCommand)
-  .command("make-ast-diagram", makeAstDiagramCommand);
+  .command("make-ast-diagram", makeAstDiagramCommand)
+  .command("pull-git-subtree", pullGitSubtreeCommand);
diff --git a/src/command/dev-call/pull-git-subtree/cmd.ts b/src/command/dev-call/pull-git-subtree/cmd.ts
new file mode 100644
index 00000000000..13fce1df820
--- /dev/null
+++ b/src/command/dev-call/pull-git-subtree/cmd.ts
@@ -0,0 +1,229 @@
+/*
+ * cmd.ts
+ *
+ * Copyright (C) 2025 Posit Software, PBC
+ */
+
+import { Command } from "cliffy/command/mod.ts";
+import { gitCmdOutput, gitCmds } from "../../../core/git.ts";
+import { debug, error, info } from "../../../deno_ral/log.ts";
+import { logLevel } from "../../../core/log.ts";
+
+interface SubtreeConfig {
+  name: string;
+  prefix: string;
+  remoteUrl: string;
+  remoteBranch: string;
+}
+
+// Subtree configurations - update these with actual repositories
+const SUBTREES: SubtreeConfig[] = [
+  {
+    name: "julia-engine",
+    prefix: "src/resources/extension-subtrees/julia-engine",
+    remoteUrl: "https://github.com/gordonwoodhull/quarto-julia-engine.git",
+    remoteBranch: "main",
+  },
+  // Add more subtrees here as needed
+];
+
+async function findLastSplit(
+  quartoRoot: string,
+  prefix: string,
+): Promise<string | null> {
+  try {
+    debug(
+      `Searching for last split with grep pattern: git-subtree-dir: ${prefix}$`,
+    );
+    const log = await gitCmdOutput(quartoRoot, [
+      "log",
+      `--grep=git-subtree-dir: ${prefix}$`,
+      "-1",
+      "--pretty=%b",
+    ]);
+
+    debug(`Git log output: ${log}`);
+    const splitLine = log.split("\n").find((line) =>
+      line.startsWith("git-subtree-split:")
+    );
+    if (!splitLine) {
+      debug("No split line found in log output");
+      return null;
+    }
+
+    const splitCommit = splitLine.split(/\s+/)[1];
+    debug(`Found last split commit: ${splitCommit}`);
+    return splitCommit;
+  } catch (e) {
+    debug(`Error finding last split: ${e}`);
+    return null;
+  }
+}
+
+async function pullSubtree(
+  quartoRoot: string,
+  config: SubtreeConfig,
+): Promise<void> {
+  info(`\n=== Pulling subtree: ${config.name} ===`);
+  info(`Prefix: ${config.prefix}`);
+  info(`Remote: ${config.remoteUrl}`);
+  info(`Branch: ${config.remoteBranch}`);
+
+  // Fetch from remote
+  info("Fetching...");
+  await gitCmds(quartoRoot, [
+    ["fetch", config.remoteUrl, config.remoteBranch],
+  ]);
+
+  // Check what FETCH_HEAD points to
+  const fetchHead = await gitCmdOutput(quartoRoot, ["rev-parse", "FETCH_HEAD"]);
+  debug(`FETCH_HEAD resolves to: ${fetchHead.trim()}`);
+
+  // Check if prefix directory exists
+  const prefixPath = `${quartoRoot}/${config.prefix}`;
+  let prefixExists = false;
+  try {
+    const stat = await Deno.stat(prefixPath);
+    prefixExists = stat.isDirectory;
+    debug(`Prefix directory exists: ${prefixExists} (${prefixPath})`);
+  } catch {
+    debug(`Prefix directory does not exist: ${prefixPath}`);
+  }
+
+  // Find last split point
+  let lastSplit = await findLastSplit(quartoRoot, config.prefix);
+
+  if (!lastSplit) {
+    info("No previous subtree found - using 'git subtree add'");
+    await gitCmds(quartoRoot, [
+      [
+        "subtree",
+        "add",
+        "--squash",
+        `--prefix=${config.prefix}`,
+        config.remoteUrl,
+        config.remoteBranch,
+      ],
+    ]);
+    lastSplit = await gitCmdOutput(quartoRoot, ["rev-parse", "FETCH_HEAD^"]);
+    debug(`After subtree add, lastSplit set to: ${lastSplit.trim()}`);
+  }
+
+  // Check for new commits
+  const commitRange = `${lastSplit}..FETCH_HEAD`;
+  debug(`Checking commit range: ${commitRange}`);
+
+  const hasNewCommits = await gitCmdOutput(quartoRoot, [
+    "log",
+    "--oneline",
+    commitRange,
+    "-1",
+  ]);
+
+  if (!hasNewCommits.trim()) {
+    info("No new commits to merge");
+    debug(`Commit range ${commitRange} has no commits`);
+    if (!prefixExists) {
+      info("WARNING: Prefix directory doesn't exist but no new commits found!");
+      debug("This may indicate lastSplit was found on a different branch");
+    }
+    return;
+  }
+
+  debug(`Found new commits in range ${commitRange}`);
+
+  // Do the subtree pull
+  info("Running git subtree pull --squash...");
+  await gitCmds(quartoRoot, [
+    [
+      "subtree",
+      "pull",
+      "--squash",
+      `--prefix=${config.prefix}`,
+      config.remoteUrl,
+      config.remoteBranch,
+    ],
+  ]);
+
+  info("✓ Done!");
+}
+
+export const pullGitSubtreeCommand = new Command()
+  .name("pull-git-subtree")
+  .hidden()
+  .arguments("[name:string]")
+  .description(
+    "Pull configured git subtrees.\n\n" +
+      "This command pulls from configured subtree repositories " +
+      "using --squash, which creates two commits: a squash commit " +
+      "containing the subtree changes and a merge commit that " +
+      "integrates it into your branch.\n\n" +
+      "Arguments:\n" +
+      "  [name]  Name of subtree to pull (use 'all' or omit to pull all)",
+  )
+  .action(async (_options: unknown, nameArg?: string) => {
+    // Get quarto root directory
+    const quartoRoot = Deno.env.get("QUARTO_ROOT");
+    if (!quartoRoot) {
+      error(
+        "QUARTO_ROOT environment variable not set. This command requires a development version of Quarto.",
+      );
+      Deno.exit(1);
+    }
+
+    // Show current branch for debugging (only if debug logging enabled)
+    if (logLevel() === "DEBUG") {
+      try {
+        const currentBranch = await gitCmdOutput(quartoRoot, [
+          "branch",
+          "--show-current",
+        ]);
+        debug(`Current branch: ${currentBranch.trim()}`);
+      } catch (e) {
+        debug(`Unable to determine current branch: ${e}`);
+      }
+    }
+
+    // Determine which subtrees to pull
+    let subtreesToPull: SubtreeConfig[];
+
+    if (!nameArg || nameArg === "all") {
+      // Pull all subtrees
+      subtreesToPull = SUBTREES;
+      info(`Quarto root: ${quartoRoot}`);
+      info(`Processing all ${SUBTREES.length} subtree(s)...`);
+    } else {
+      // Pull specific subtree by name
+      const config = SUBTREES.find((s) => s.name === nameArg);
+      if (!config) {
+        error(`Unknown subtree name: ${nameArg}`);
+        error(`Available subtrees: ${SUBTREES.map((s) => s.name).join(", ")}`);
+        Deno.exit(1);
+      }
+      subtreesToPull = [config];
+      info(`Quarto root: ${quartoRoot}`);
+      info(`Processing subtree: ${nameArg}`);
+    }
+
+    let successCount = 0;
+    let errorCount = 0;
+
+    for (const config of subtreesToPull) {
+      try {
+        await pullSubtree(quartoRoot, config);
+        successCount++;
+      } catch (err) {
+        const message = err instanceof Error ? err.message : String(err);
+        error(`Failed to pull subtree ${config.name}: ${message}`);
+        errorCount++;
+      }
+    }
+
+    info(`\n=== Summary ===`);
+    info(`Success: ${successCount}`);
+    info(`Failed: ${errorCount}`);
+
+    if (errorCount > 0) {
+      Deno.exit(1);
+    }
+  });
diff --git a/src/command/preview/preview.ts b/src/command/preview/preview.ts
index aab909630b1..8617beefad4 100644
--- a/src/command/preview/preview.ts
+++ b/src/command/preview/preview.ts
@@ -418,6 +418,7 @@ export async function renderForPreview(
   pandocArgs: string[],
   project?: ProjectContext,
 ): Promise<RenderForPreviewResult> {
+
   // render
   const renderResult = await render(file, {
     services,
diff --git a/src/command/render/codetools.ts b/src/command/render/codetools.ts
index 5954f6e085b..d7a7cee1d5f 100644
--- a/src/command/render/codetools.ts
+++ b/src/command/render/codetools.ts
@@ -20,7 +20,10 @@ import {
   kCodeToolsViewSource,
   kKeepSource,
 } from "../../config/constants.ts";
-import { ExecutionEngine, ExecutionTarget } from "../../execute/types.ts";
+import {
+  ExecutionEngineInstance,
+  ExecutionTarget,
+} from "../../execute/types.ts";
 
 import { isHtmlOutput } from "../../config/format.ts";
 import { executionEngineCanKeepSource } from "../../execute/engine-info.ts";
@@ -47,7 +50,7 @@ export function formatHasCodeTools(format: Format) {
 
 export function resolveKeepSource(
   format: Format,
-  engine: ExecutionEngine,
+  engine: ExecutionEngineInstance,
   target: ExecutionTarget,
 ) {
   // keep source if requested (via keep-source or code-tools), we are targeting html,
diff --git a/src/command/render/pandoc.ts b/src/command/render/pandoc.ts
index 91b4371db40..12d35de35d5 100644
--- a/src/command/render/pandoc.ts
+++ b/src/command/render/pandoc.ts
@@ -429,6 +429,22 @@ export async function runPandoc(
     // Don't print _quarto.tests
     // This can cause issue on regex test for printed output
     cleanQuartoTestsMetadata(metadata);
+
+    // Filter out bundled engines from the engines array
+    if (Array.isArray(metadata.engines)) {
+      const filteredEngines = metadata.engines.filter((engine) => {
+        const enginePath = typeof engine === "string" ? engine : engine.path;
+        // Keep user engines, filter out bundled ones
+        return !enginePath?.includes("/src/resources/extension-subtrees/");
+      });
+
+      // Remove the engines key entirely if empty, otherwise assign filtered array
+      if (filteredEngines.length === 0) {
+        delete metadata.engines;
+      } else {
+        metadata.engines = filteredEngines;
+      }
+    }
   };
 
   cleanMetadataForPrinting(printMetadata);
@@ -1293,6 +1309,23 @@ export async function runPandoc(
   // and it breaks ensureFileRegexMatches
   cleanQuartoTestsMetadata(pandocPassedMetadata);
 
+  // Filter out bundled engines from metadata passed to Pandoc
+  if (Array.isArray(pandocPassedMetadata.engines)) {
+    const filteredEngines = pandocPassedMetadata.engines.filter((engine) => {
+      const enginePath = typeof engine === "string" ? engine : engine.path;
+      if (!enginePath) return true;
+
+      const normalizedPath = enginePath.replace(/\\/g, "/");
+      return !normalizedPath.includes("extension-subtrees/");
+    });
+
+    if (filteredEngines.length === 0) {
+      delete pandocPassedMetadata.engines;
+    } else {
+      pandocPassedMetadata.engines = filteredEngines;
+    }
+  }
+
   Deno.writeTextFileSync(
     metadataTemp,
     stringify(pandocPassedMetadata, {
diff --git a/src/command/render/project.ts b/src/command/render/project.ts
index 6156e9b8508..b468a991482 100644
--- a/src/command/render/project.ts
+++ b/src/command/render/project.ts
@@ -792,7 +792,7 @@ export async function renderProject(
         context,
       );
       if (engine?.postRender) {
-        await engine.postRender(file, projResults.context);
+        await engine.postRender(file);
       }
     }
 
diff --git a/src/command/render/render-contexts.ts b/src/command/render/render-contexts.ts
index 94fa43c1e01..7ad6555ae45 100644
--- a/src/command/render/render-contexts.ts
+++ b/src/command/render/render-contexts.ts
@@ -59,7 +59,10 @@ import {
 } from "../../core/language.ts";
 import { defaultWriterFormat } from "../../format/formats.ts";
 import { mergeConfigs } from "../../core/config.ts";
-import { ExecutionEngine, ExecutionTarget } from "../../execute/types.ts";
+import {
+  ExecutionEngineInstance,
+  ExecutionTarget,
+} from "../../execute/types.ts";
 import {
   deleteProjectMetadata,
   directoryMetadataForInputFile,
@@ -296,7 +299,7 @@ export async function renderContexts(
 
     // if this isn't for execute then cleanup context
     if (!forExecute && engine.executeTargetSkipped) {
-      engine.executeTargetSkipped(target, formats[formatKey].format, project);
+      engine.executeTargetSkipped(target, formats[formatKey].format);
     }
   }
   return contexts;
@@ -394,7 +397,7 @@ function mergeQuartoConfigs(
 async function resolveFormats(
   file: RenderFile,
   target: ExecutionTarget,
-  engine: ExecutionEngine,
+  engine: ExecutionEngineInstance,
   options: RenderOptions,
   _notebookContext: NotebookContext,
   project: ProjectContext,
diff --git a/src/command/render/render-files.ts b/src/command/render/render-files.ts
index bcb5a84c181..171cffec591 100644
--- a/src/command/render/render-files.ts
+++ b/src/command/render/render-files.ts
@@ -203,7 +203,6 @@ export async function renderExecute(
           context.engine.executeTargetSkipped(
             context.target,
             context.format,
-            context.project,
           );
         }
 
diff --git a/src/command/render/render-shared.ts b/src/command/render/render-shared.ts
index 2affd4004a7..63841a09383 100644
--- a/src/command/render/render-shared.ts
+++ b/src/command/render/render-shared.ts
@@ -100,7 +100,7 @@ export async function render(
 
   assert(!context, "Expected no context here");
   // NB: singleFileProjectContext is currently not fully-featured
-  context = await singleFileProjectContext(path, nbContext, options.flags);
+  context = await singleFileProjectContext(path, nbContext, options);
 
   // otherwise it's just a file render
   const result = await renderFiles(
@@ -147,7 +147,7 @@ export async function render(
 
   if (!renderResult.error && engine?.postRender) {
     for (const file of renderResult.files) {
-      await engine.postRender(file, renderResult.context);
+      await engine.postRender(file);
     }
   }
 
diff --git a/src/command/render/render.ts b/src/command/render/render.ts
index e8e0d70dcb3..8cc9538bcfb 100644
--- a/src/command/render/render.ts
+++ b/src/command/render/render.ts
@@ -24,6 +24,7 @@ import {
   executionEngine,
   executionEngineKeepMd,
 } from "../../execute/engine.ts";
+import { engineProjectContext } from "../../project/engine-project-context.ts";
 
 import {
   HtmlPostProcessor,
@@ -90,7 +91,8 @@ export async function renderPandoc(
   if (executeResult.engineDependencies) {
     for (const engineName of Object.keys(executeResult.engineDependencies)) {
       const engine = executionEngine(engineName)!;
-      const dependenciesResult = await engine.dependencies({
+      const engineInstance = engine.launch(engineProjectContext(context.project));
+      const dependenciesResult = await engineInstance.dependencies({
         target: context.target,
         format,
         output: recipe.output,
diff --git a/src/command/render/types.ts b/src/command/render/types.ts
index 83664ead97c..cdc576ea53c 100644
--- a/src/command/render/types.ts
+++ b/src/command/render/types.ts
@@ -14,7 +14,7 @@ import {
 } from "../../config/types.ts";
 import {
   ExecuteResult,
-  ExecutionEngine,
+  ExecutionEngineInstance,
   ExecutionTarget,
 } from "../../execute/types.ts";
 import { Metadata } from "../../config/types.ts";
@@ -56,7 +56,7 @@ export interface RenderServiceWithLifetime extends RenderServices {
 export interface RenderContext {
   target: ExecutionTarget;
   options: RenderOptions;
-  engine: ExecutionEngine;
+  engine: ExecutionEngineInstance;
   format: Format;
   libDir: string;
   project: ProjectContext;
diff --git a/src/core/git.ts b/src/core/git.ts
index db6bb731cf3..ca368ca2e51 100644
--- a/src/core/git.ts
+++ b/src/core/git.ts
@@ -86,3 +86,24 @@ export async function gitBranchExists(
 
   return Promise.resolve(undefined);
 }
+
+export async function gitCmdOutput(
+  dir: string,
+  args: string[],
+): Promise<string> {
+  const result = await execProcess({
+    cmd: "git",
+    args,
+    cwd: dir,
+    stdout: "piped",
+    stderr: "piped",
+  });
+
+  if (!result.success) {
+    throw new Error(
+      `Git command failed: git ${args.join(" ")}\n${result.stderr || ""}`,
+    );
+  }
+
+  return result.stdout?.trim() || "";
+}
diff --git a/src/core/jupyter/jupyter-embed.ts b/src/core/jupyter/jupyter-embed.ts
index 16586e825de..718c2f03105 100644
--- a/src/core/jupyter/jupyter-embed.ts
+++ b/src/core/jupyter/jupyter-embed.ts
@@ -66,7 +66,7 @@ import {
 } from "../../render/notebook/notebook-types.ts";
 import { ProjectContext } from "../../project/types.ts";
 import { logProgress } from "../log.ts";
-import * as ld from "../../../src/core/lodash.ts";
+import * as ld from "../lodash.ts";
 import { texSafeFilename } from "../tex.ts";
 
 export interface JupyterNotebookAddress {
diff --git a/src/core/jupyter/jupyter.ts b/src/core/jupyter/jupyter.ts
index 0281c144f67..70288fcbf20 100644
--- a/src/core/jupyter/jupyter.ts
+++ b/src/core/jupyter/jupyter.ts
@@ -153,7 +153,7 @@ import {
   removeIfEmptyDir,
 } from "../path.ts";
 import { convertToHtmlSpans, hasAnsiEscapeCodes } from "../ansi-colors.ts";
-import { kProjectType, ProjectContext } from "../../project/types.ts";
+import { kProjectType, EngineProjectContext } from "../../project/types.ts";
 import { mergeConfigs } from "../config.ts";
 import { encodeBase64 } from "encoding/base64";
 import {
@@ -290,7 +290,7 @@ const ticksForCode = (code: string[]) => {
 export async function quartoMdToJupyter(
   markdown: string,
   includeIds: boolean,
-  project?: ProjectContext,
+  project?: EngineProjectContext,
 ): Promise<JupyterNotebook> {
   const [kernelspec, metadata] = await jupyterKernelspecFromMarkdown(
     markdown,
@@ -500,7 +500,7 @@ export async function quartoMdToJupyter(
 
 export async function jupyterKernelspecFromMarkdown(
   markdown: string,
-  project?: ProjectContext,
+  project?: EngineProjectContext,
 ): Promise<[JupyterKernelspec, Metadata]> {
   const config = project?.config;
   const yaml = config
diff --git a/src/core/path.ts b/src/core/path.ts
index 23e606ff66a..f6cd41408fc 100644
--- a/src/core/path.ts
+++ b/src/core/path.ts
@@ -85,7 +85,7 @@ export function isModifiedAfter(file: string, otherFile: string) {
   }
 }
 
-export function dirAndStem(file: string) {
+export function dirAndStem(file: string): [string, string] {
   return [
     dirname(file),
     basename(file, extname(file)),
diff --git a/src/core/performance/metrics.ts b/src/core/performance/metrics.ts
index 8bb50375364..e5418944782 100644
--- a/src/core/performance/metrics.ts
+++ b/src/core/performance/metrics.ts
@@ -4,7 +4,7 @@
  * Copyright (C) 2020-2023 Posit Software, PBC
  */
 
-import { inputTargetIndexCacheMetrics } from "../../project/project-index.ts";
+import { inputTargetIndexCacheMetrics } from "../../project/target-index-cache-metrics.ts";
 import { functionTimes } from "./function-times.ts";
 import { Stats } from "./stats.ts";
 
diff --git a/src/core/quarto-api.ts b/src/core/quarto-api.ts
new file mode 100644
index 00000000000..48ba351af35
--- /dev/null
+++ b/src/core/quarto-api.ts
@@ -0,0 +1,394 @@
+// src/core/quarto-api.ts
+
+// Import types from quarto-cli, not quarto-types
+import { MappedString } from "./lib/text-types.ts";
+import { Format, FormatPandoc, Metadata } from "../config/types.ts";
+import { PartitionedMarkdown } from "./pandoc/types.ts";
+import type { EngineProjectContext } from "../project/types.ts";
+import type {
+  JupyterCapabilities,
+  JupyterKernelspec,
+  JupyterNotebook,
+  JupyterToMarkdownOptions,
+  JupyterToMarkdownResult,
+  JupyterWidgetDependencies,
+} from "./jupyter/types.ts";
+import {
+  isJupyterNotebook,
+  jupyterAssets,
+  jupyterFromJSON,
+  jupyterKernelspecFromMarkdown,
+  jupyterToMarkdown,
+  kJupyterNotebookExtensions,
+  quartoMdToJupyter,
+} from "./jupyter/jupyter.ts";
+import {
+  jupyterNotebookFiltered,
+  markdownFromNotebookFile,
+  markdownFromNotebookJSON,
+} from "./jupyter/jupyter-filters.ts";
+import { includesForJupyterWidgetDependencies } from "./jupyter/widgets.ts";
+import { pythonExec } from "./jupyter/exec.ts";
+import { jupyterCapabilities } from "./jupyter/capabilities.ts";
+import { jupyterKernelspecForLanguage } from "./jupyter/kernels.ts";
+import {
+  jupyterCapabilitiesJson,
+  jupyterCapabilitiesMessage,
+  jupyterInstallationMessage,
+  jupyterUnactivatedEnvMessage,
+  pythonInstallationMessage,
+} from "./jupyter/jupyter-shared.ts";
+import type { JupyterNotebookAssetPaths } from "./jupyter/jupyter.ts";
+import type { PandocIncludes, PostProcessOptions } from "../execute/types.ts";
+import {
+  isJupyterPercentScript,
+  markdownFromJupyterPercentScript,
+} from "../execute/jupyter/percent.ts";
+import { runExternalPreviewServer } from "../preview/preview-server.ts";
+import type { PreviewServer } from "../preview/preview-server.ts";
+import { isQmdFile } from "../execute/qmd.ts";
+import { postProcessRestorePreservedHtml } from "../execute/engine-shared.ts";
+import { onCleanup } from "./cleanup.ts";
+import { inputFilesDir, isServerShiny, isServerShinyPython } from "./render.ts";
+import { quartoDataDir } from "./appdirs.ts";
+import {
+  executeResultEngineDependencies,
+  executeResultIncludes,
+} from "../execute/jupyter/jupyter.ts";
+import { completeMessage, withSpinner } from "./console.ts";
+import type { RenderServiceWithLifetime } from "../command/render/types.ts";
+import type { LogMessageOptions } from "./log.ts";
+import * as log from "../deno_ral/log.ts";
+
+export interface QuartoAPI {
+  markdownRegex: {
+    extractYaml: (markdown: string) => Metadata;
+    partition: (markdown: string) => PartitionedMarkdown;
+    getLanguages: (markdown: string) => Set<string>;
+    breakQuartoMd: (
+      src: string | MappedString,
+      validate?: boolean,
+      lenient?: boolean,
+    ) => Promise<QuartoMdChunks>;
+  };
+  mappedString: {
+    fromString: (text: string, fileName?: string) => MappedString;
+    fromFile: (path: string) => MappedString;
+    normalizeNewlines: (markdown: MappedString) => MappedString;
+    splitLines: (str: MappedString, keepNewLines?: boolean) => MappedString[];
+    indexToLineCol: (
+      str: MappedString,
+      offset: number,
+    ) => { line: number; column: number };
+  };
+  jupyter: {
+    isJupyterNotebook: (file: string) => boolean;
+    isPercentScript: (file: string, extensions?: string[]) => boolean;
+    notebookExtensions: string[];
+    kernelspecFromMarkdown: (
+      markdown: string,
+      project?: EngineProjectContext,
+    ) => Promise<[JupyterKernelspec, Metadata]>;
+    kernelspecForLanguage: (
+      language: string,
+    ) => Promise<JupyterKernelspec | undefined>;
+    fromJSON: (nbJson: string) => JupyterNotebook;
+    toMarkdown: (
+      nb: JupyterNotebook,
+      options: JupyterToMarkdownOptions,
+    ) => Promise<JupyterToMarkdownResult>;
+    markdownFromNotebookFile: (
+      file: string,
+      format?: Format,
+    ) => Promise<string>;
+    markdownFromNotebookJSON: (nb: JupyterNotebook) => string;
+    percentScriptToMarkdown: (file: string) => string;
+    quartoMdToJupyter: (
+      markdown: string,
+      includeIds: boolean,
+      project?: EngineProjectContext,
+    ) => Promise<JupyterNotebook>;
+    notebookFiltered: (input: string, filters: string[]) => Promise<string>;
+    assets: (input: string, to?: string) => JupyterNotebookAssetPaths;
+    widgetDependencyIncludes: (
+      deps: JupyterWidgetDependencies[],
+      tempDir: string,
+    ) => { inHeader?: string; afterBody?: string };
+    resultIncludes: (
+      tempDir: string,
+      dependencies?: JupyterWidgetDependencies,
+    ) => PandocIncludes;
+    resultEngineDependencies: (
+      dependencies?: JupyterWidgetDependencies,
+    ) => Array<JupyterWidgetDependencies> | undefined;
+    pythonExec: (kernelspec?: JupyterKernelspec) => Promise<string[]>;
+    capabilities: (
+      kernelspec?: JupyterKernelspec,
+    ) => Promise<JupyterCapabilities | undefined>;
+    capabilitiesMessage: (
+      caps: JupyterCapabilities,
+      indent?: string,
+    ) => Promise<string>;
+    capabilitiesJson: (
+      caps: JupyterCapabilities,
+    ) => Promise<JupyterCapabilities & { kernels: JupyterKernelspec[] }>;
+    installationMessage: (caps: JupyterCapabilities, indent?: string) => string;
+    unactivatedEnvMessage: (
+      caps: JupyterCapabilities,
+      indent?: string,
+    ) => string | undefined;
+    pythonInstallationMessage: (indent?: string) => string;
+  };
+  format: {
+    isHtmlCompatible: (format: Format) => boolean;
+    isIpynbOutput: (format: FormatPandoc) => boolean;
+    isLatexOutput: (format: FormatPandoc) => boolean;
+    isMarkdownOutput: (format: Format, flavors?: string[]) => boolean;
+    isPresentationOutput: (format: FormatPandoc) => boolean;
+    isHtmlDashboardOutput: (format?: string) => boolean;
+    isServerShiny: (format?: Format) => boolean;
+    isServerShinyPython: (
+      format: Format,
+      engine: string | undefined,
+    ) => boolean;
+  };
+  path: {
+    absolute: (path: string | URL) => string;
+    toForwardSlashes: (path: string) => string;
+    runtime: (subdir?: string) => string;
+    resource: (...parts: string[]) => string;
+    dirAndStem: (file: string) => [string, string];
+    isQmdFile: (file: string) => boolean;
+    inputFilesDir: (input: string) => string;
+    dataDir: (subdir?: string, roaming?: boolean) => string;
+  };
+  system: {
+    isInteractiveSession: () => boolean;
+    runningInCI: () => boolean;
+    execProcess: (
+      options: ExecProcessOptions,
+      stdin?: string,
+      mergeOutput?: "stderr>stdout" | "stdout>stderr",
+      stderrFilter?: (output: string) => string,
+      respectStreams?: boolean,
+      timeout?: number,
+    ) => Promise<ProcessResult>;
+    runExternalPreviewServer: (options: {
+      cmd: string[];
+      readyPattern: RegExp;
+      env?: Record<string, string>;
+      cwd?: string;
+    }) => PreviewServer;
+    onCleanup: (handler: () => void | Promise<void>) => void;
+    tempContext: () => TempContext;
+    checkRender: (options: {
+      content: string;
+      language: string;
+      services: RenderServiceWithLifetime;
+    }) => Promise<{ success: boolean; error?: Error }>;
+  };
+  text: {
+    lines: (text: string) => string[];
+    trimEmptyLines: (
+      lines: string[],
+      trim?: "leading" | "trailing" | "all",
+    ) => string[];
+    postProcessRestorePreservedHtml: (options: PostProcessOptions) => void;
+    lineColToIndex: (
+      text: string,
+    ) => (position: { line: number; column: number }) => number;
+    executeInlineCodeHandler: (
+      language: string,
+      exec: (expr: string) => string | undefined,
+    ) => (code: string) => string;
+    asYamlText: (metadata: Metadata) => string;
+  };
+  console: {
+    withSpinner: <T>(
+      options: {
+        message: string | (() => string);
+        doneMessage?: string | boolean;
+      },
+      fn: () => Promise<T>,
+    ) => Promise<T>;
+    completeMessage: (message: string) => void;
+    info: (message: string, options?: LogMessageOptions) => void;
+    warning: (message: string, options?: LogMessageOptions) => void;
+    error: (message: string, options?: LogMessageOptions) => void;
+  };
+  crypto: {
+    md5Hash: (content: string) => string;
+  };
+}
+
+// Create the implementation of the quartoAPI
+import { readYamlFromMarkdown } from "./yaml.ts";
+import { partitionMarkdown } from "./pandoc/pandoc-partition.ts";
+import { languagesInMarkdown } from "../execute/engine-shared.ts";
+import {
+  asMappedString,
+  mappedIndexToLineCol,
+  mappedLines,
+  mappedNormalizeNewlines,
+} from "./lib/mapped-text.ts";
+import { mappedStringFromFile } from "./mapped-text.ts";
+import {
+  isHtmlCompatible,
+  isHtmlDashboardOutput,
+  isIpynbOutput,
+  isLatexOutput,
+  isMarkdownOutput,
+  isPresentationOutput,
+} from "../config/format.ts";
+import { dirAndStem, normalizePath, pathWithForwardSlashes } from "./path.ts";
+import { quartoRuntimeDir } from "./appdirs.ts";
+import { resourcePath } from "./resources.ts";
+import { isInteractiveSession } from "./platform.ts";
+import { runningInCI } from "./ci-info.ts";
+import { execProcess } from "./process.ts";
+import type { ExecProcessOptions } from "./process.ts";
+import type { ProcessResult } from "./process-types.ts";
+import { asYamlText } from "./jupyter/jupyter-fixups.ts";
+import { breakQuartoMd } from "./lib/break-quarto-md.ts";
+import type { QuartoMdCell, QuartoMdChunks } from "./lib/break-quarto-md.ts";
+import { lineColToIndex, lines, trimEmptyLines } from "./lib/text.ts";
+import { md5HashSync } from "./hash.ts";
+import { executeInlineCodeHandler } from "./execute-inline.ts";
+import { globalTempContext } from "./temp.ts";
+import type { TempContext } from "./temp-types.ts";
+
+/**
+ * Global Quarto API implementation
+ */
+export const quartoAPI: QuartoAPI = {
+  markdownRegex: {
+    extractYaml: readYamlFromMarkdown,
+    partition: partitionMarkdown,
+    getLanguages: languagesInMarkdown,
+    breakQuartoMd,
+  },
+
+  mappedString: {
+    fromString: asMappedString,
+    fromFile: mappedStringFromFile,
+    normalizeNewlines: mappedNormalizeNewlines,
+    splitLines: (str: MappedString, keepNewLines?: boolean) => {
+      return mappedLines(str, keepNewLines);
+    },
+    indexToLineCol: (str: MappedString, offset: number) => {
+      const fn = mappedIndexToLineCol(str);
+      return fn(offset);
+    },
+  },
+
+  jupyter: {
+    // 1. Notebook Detection & Introspection
+    isJupyterNotebook,
+    isPercentScript: isJupyterPercentScript,
+    notebookExtensions: kJupyterNotebookExtensions,
+    kernelspecFromMarkdown: jupyterKernelspecFromMarkdown,
+    kernelspecForLanguage: jupyterKernelspecForLanguage,
+    fromJSON: jupyterFromJSON,
+
+    // 2. Notebook Conversion
+    toMarkdown: jupyterToMarkdown,
+    markdownFromNotebookFile,
+    markdownFromNotebookJSON,
+    percentScriptToMarkdown: markdownFromJupyterPercentScript,
+    quartoMdToJupyter,
+
+    // 3. Notebook Processing & Assets
+    notebookFiltered: jupyterNotebookFiltered,
+    assets: jupyterAssets,
+    widgetDependencyIncludes: includesForJupyterWidgetDependencies,
+    resultIncludes: (
+      tempDir: string,
+      dependencies?: JupyterWidgetDependencies,
+    ) => {
+      return executeResultIncludes(tempDir, dependencies) || {};
+    },
+    resultEngineDependencies: (dependencies?: JupyterWidgetDependencies) => {
+      const result = executeResultEngineDependencies(dependencies);
+      return result as Array<JupyterWidgetDependencies> | undefined;
+    },
+
+    // 4. Runtime & Environment
+    pythonExec,
+    capabilities: jupyterCapabilities,
+    capabilitiesMessage: jupyterCapabilitiesMessage,
+    capabilitiesJson: jupyterCapabilitiesJson,
+    installationMessage: jupyterInstallationMessage,
+    unactivatedEnvMessage: jupyterUnactivatedEnvMessage,
+    pythonInstallationMessage,
+  },
+
+  format: {
+    isHtmlCompatible,
+    isIpynbOutput,
+    isLatexOutput,
+    isMarkdownOutput,
+    isPresentationOutput,
+    isHtmlDashboardOutput: (format?: string) => !!isHtmlDashboardOutput(format),
+    isServerShiny,
+    isServerShinyPython,
+  },
+
+  path: {
+    absolute: normalizePath,
+    toForwardSlashes: pathWithForwardSlashes,
+    runtime: quartoRuntimeDir,
+    resource: (...parts: string[]) => {
+      if (parts.length === 0) {
+        return resourcePath();
+      } else if (parts.length === 1) {
+        return resourcePath(parts[0]);
+      } else {
+        // Join multiple parts with the first one
+        const joined = parts.join("/");
+        return resourcePath(joined);
+      }
+    },
+    dirAndStem,
+    isQmdFile,
+    inputFilesDir,
+    dataDir: quartoDataDir,
+  },
+
+  system: {
+    isInteractiveSession,
+    runningInCI,
+    execProcess,
+    runExternalPreviewServer,
+    onCleanup,
+    tempContext: globalTempContext,
+    checkRender: async (options) => {
+      // Dynamic import to avoid async module initialization chain in bundle
+      const { checkRender } = await import("../command/check/check-render.ts");
+      return await checkRender(options);
+    },
+  },
+
+  text: {
+    lines,
+    trimEmptyLines,
+    postProcessRestorePreservedHtml,
+    lineColToIndex,
+    executeInlineCodeHandler,
+    asYamlText,
+  },
+
+  console: {
+    withSpinner,
+    completeMessage,
+    info: (message: string, options?: LogMessageOptions) =>
+      log.info(message, options),
+    warning: (message: string, options?: LogMessageOptions) =>
+      log.warning(message, options),
+    error: (message: string, options?: LogMessageOptions) =>
+      log.error(message, options),
+  },
+
+  crypto: {
+    md5Hash: md5HashSync,
+  },
+};
diff --git a/src/execute/engine-info.ts b/src/execute/engine-info.ts
index e8cb53421c1..ba3d43944ee 100644
--- a/src/execute/engine-info.ts
+++ b/src/execute/engine-info.ts
@@ -1,14 +1,16 @@
 /*
-* engine-info.ts
-*
-* Copyright (C) 2022 Posit Software, PBC
-*
-*/
+ * engine-info.ts
+ *
+ * Copyright (C) 2022 Posit Software, PBC
+ */
 
-import { ExecutionEngine, ExecutionTarget } from "./types.ts";
+import {
+  ExecutionEngineInstance,
+  ExecutionTarget,
+} from "./types.ts";
 
 export function executionEngineCanKeepSource(
-  engine: ExecutionEngine,
+  engine: ExecutionEngineInstance,
   target: ExecutionTarget,
 ) {
   return !engine.canKeepSource || engine.canKeepSource(target);
diff --git a/src/execute/engine.ts b/src/execute/engine.ts
index ba219e2094f..32f5f022b7a 100644
--- a/src/execute/engine.ts
+++ b/src/execute/engine.ts
@@ -4,7 +4,7 @@
  * Copyright (C) 2020-2022 Posit Software, PBC
  */
 
-import { extname, join } from "../deno_ral/path.ts";
+import { extname, join, toFileUrl } from "../deno_ral/path.ts";
 
 import * as ld from "../core/lodash.ts";
 
@@ -17,10 +17,16 @@ import { dirAndStem } from "../core/path.ts";
 import { metadataAsFormat } from "../config/metadata.ts";
 import { kBaseFormat, kEngine } from "../config/constants.ts";
 
-import { knitrEngine } from "./rmd.ts";
-import { jupyterEngine } from "./jupyter/jupyter.ts";
-import { kMdExtensions, markdownEngine } from "./markdown.ts";
-import { ExecutionEngine, kQmdExtensions } from "./types.ts";
+import { knitrEngineDiscovery } from "./rmd.ts";
+import { jupyterEngineDiscovery } from "./jupyter/jupyter.ts";
+import { ExternalEngine } from "../resources/types/schema-types.ts";
+import { kMdExtensions, markdownEngineDiscovery } from "./markdown.ts";
+import {
+  ExecutionEngineDiscovery,
+  ExecutionEngineInstance,
+  ExecutionTarget,
+  kQmdExtensions,
+} from "./types.ts";
 import { languagesInMarkdown } from "./engine-shared.ts";
 import { languages as handlerLanguages } from "../core/handlers/base.ts";
 import { RenderContext, RenderFlags } from "../command/render/types.ts";
@@ -28,13 +34,42 @@ import { mergeConfigs } from "../core/config.ts";
 import { ProjectContext } from "../project/types.ts";
 import { pandocBuiltInFormats } from "../core/pandoc/pandoc-formats.ts";
 import { gitignoreEntries } from "../project/project-gitignore.ts";
-import { juliaEngine } from "./julia.ts";
 import { ensureFileInformationCache } from "../project/project-shared.ts";
+import { engineProjectContext } from "../project/engine-project-context.ts";
 import { Command } from "cliffy/command/mod.ts";
+import { quartoAPI } from "../core/quarto-api.ts";
+import { satisfies } from "semver/mod.ts";
+import { quartoConfig } from "../core/quarto.ts";
 
-const kEngines: Map<string, ExecutionEngine> = new Map();
+const kEngines: Map<string, ExecutionEngineDiscovery> = new Map();
 
-export function executionEngines(): ExecutionEngine[] {
+/**
+ * Check if an engine's Quarto version requirement is satisfied
+ * @param engine The engine to check
+ * @throws Error if the version requirement is not met or is invalid
+ */
+function checkEngineVersionRequirement(engine: ExecutionEngineDiscovery): void {
+  if (engine.quartoRequired) {
+    const ourVersion = quartoConfig.version();
+    try {
+      if (!satisfies(ourVersion, engine.quartoRequired)) {
+        throw new Error(
+          `Execution engine '${engine.name}' requires Quarto ${engine.quartoRequired}, ` +
+            `but you have ${ourVersion}. Please upgrade Quarto to use this engine.`,
+        );
+      }
+    } catch (e) {
+      if (e instanceof Error && e.message.includes("Invalid")) {
+        throw new Error(
+          `Execution engine '${engine.name}' has invalid version constraint: ${engine.quartoRequired}`,
+        );
+      }
+      throw e;
+    }
+  }
+}
+
+export function executionEngines(): ExecutionEngineDiscovery[] {
   return [...kEngines.values()];
 }
 
@@ -42,17 +77,27 @@ export function executionEngine(name: string) {
   return kEngines.get(name);
 }
 
-for (
-  const engine of [knitrEngine, jupyterEngine, markdownEngine, juliaEngine]
-) {
-  registerExecutionEngine(engine);
-}
+// Register the standard engines with discovery interface
+registerExecutionEngine(knitrEngineDiscovery);
 
-export function registerExecutionEngine(engine: ExecutionEngine) {
+// Register jupyter engine with discovery interface
+registerExecutionEngine(jupyterEngineDiscovery);
+
+// Register markdown engine with discovery interface
+registerExecutionEngine(markdownEngineDiscovery);
+
+export function registerExecutionEngine(engine: ExecutionEngineDiscovery) {
   if (kEngines.has(engine.name)) {
     throw new Error(`Execution engine ${engine.name} already registered`);
   }
+
+  // Check if engine's Quarto version requirement is satisfied
+  checkEngineVersionRequirement(engine);
+
   kEngines.set(engine.name, engine);
+  if (engine.init) {
+    engine.init(quartoAPI);
+  }
 }
 
 export function executionEngineKeepMd(context: RenderContext) {
@@ -67,7 +112,7 @@ export function executionEngineKeepMd(context: RenderContext) {
 
 // for the project crawl
 export function executionEngineIntermediateFiles(
-  engine: ExecutionEngine,
+  engine: ExecutionEngineInstance,
   input: string,
 ) {
   // all files of the form e.g. .html.md or -html.md are interemediate
@@ -97,10 +142,11 @@ export function engineValidExtensions(): string[] {
 }
 
 export function markdownExecutionEngine(
+  project: ProjectContext,
   markdown: string,
-  reorderedEngines: Map<string, ExecutionEngine>,
+  reorderedEngines: Map<string, ExecutionEngineDiscovery>,
   flags?: RenderFlags,
-) {
+): ExecutionEngineInstance {
   // read yaml and see if the engine is declared in yaml
   // (note that if the file were a non text-file like ipynb
   //  it would have already been claimed via extension)
@@ -112,11 +158,11 @@ export function markdownExecutionEngine(
       yaml = mergeConfigs(yaml, flags?.metadata);
       for (const [_, engine] of reorderedEngines) {
         if (yaml[engine.name]) {
-          return engine;
+          return engine.launch(engineProjectContext(project));
         }
         const format = metadataAsFormat(yaml);
         if (format.execute?.[kEngine] === engine.name) {
-          return engine;
+          return engine.launch(engineProjectContext(project));
         }
       }
     }
@@ -129,7 +175,7 @@ export function markdownExecutionEngine(
   for (const language of languages) {
     for (const [_, engine] of reorderedEngines) {
       if (engine.claimsLanguage(language)) {
-        return engine;
+        return engine.launch(engineProjectContext(project));
       }
     }
   }
@@ -138,18 +184,68 @@ export function markdownExecutionEngine(
   // if there is a non-cell handler language then this must be jupyter
   for (const language of languages) {
     if (language !== "ojs" && !handlerLanguagesVal.includes(language)) {
-      return jupyterEngine;
+      return jupyterEngineDiscovery.launch(engineProjectContext(project));
     }
   }
 
   // if there is no computational engine discovered then bind
   // to the markdown engine;
-  return markdownEngine;
+  return markdownEngineDiscovery.launch(engineProjectContext(project));
 }
 
-function reorderEngines(project: ProjectContext) {
-  const userSpecifiedOrder: string[] =
-    project.config?.engines as string[] | undefined ?? [];
+export async function reorderEngines(project: ProjectContext) {
+  const userSpecifiedOrder: string[] = [];
+  const projectEngines = project.config?.engines as
+    | (string | ExternalEngine)[]
+    | undefined;
+
+  for (const engine of projectEngines ?? []) {
+    if (typeof engine === "object") {
+      try {
+        const extEngine = (await import(toFileUrl(engine.path).href))
+          .default as ExecutionEngineDiscovery;
+
+        // Validate that the module exports an ExecutionEngineDiscovery object
+        if (!extEngine) {
+          throw new Error(
+            `Engine module must export a default ExecutionEngineDiscovery object. ` +
+              `Check that your engine file exports 'export default yourEngineDiscovery;'`,
+          );
+        }
+
+        // Validate required properties
+        const missing: string[] = [];
+        if (!extEngine.name) missing.push("name");
+        if (!extEngine.launch) missing.push("launch");
+        if (!extEngine.claimsLanguage) missing.push("claimsLanguage");
+
+        if (missing.length > 0) {
+          throw new Error(
+            `Engine is missing required properties: ${missing.join(", ")}. ` +
+              `Ensure your engine implements the ExecutionEngineDiscovery interface.`,
+          );
+        }
+
+        // Check if engine's Quarto version requirement is satisfied
+        checkEngineVersionRequirement(extEngine);
+
+        userSpecifiedOrder.push(extEngine.name);
+        kEngines.set(extEngine.name, extEngine);
+        if (extEngine.init) {
+          extEngine.init(quartoAPI);
+        }
+      } catch (err: any) {
+        // Throw error for engine import failures as this is a serious configuration issue
+        throw new Error(
+          `Failed to import engine from ${engine.path}: ${
+            err.message || "Unknown error"
+          }`,
+        );
+      }
+    } else {
+      userSpecifiedOrder.push(engine);
+    }
+  }
 
   for (const key of userSpecifiedOrder) {
     if (!kEngines.has(key)) {
@@ -161,7 +257,7 @@ function reorderEngines(project: ProjectContext) {
     }
   }
 
-  const reorderedEngines = new Map<string, ExecutionEngine>();
+  const reorderedEngines = new Map<string, ExecutionEngineDiscovery>();
 
   // Add keys in the order of userSpecifiedOrder first
   for (const key of userSpecifiedOrder) {
@@ -182,7 +278,7 @@ export async function fileExecutionEngine(
   file: string,
   flags: RenderFlags | undefined,
   project: ProjectContext,
-) {
+): Promise<ExecutionEngineInstance | undefined> {
   // get the extension and validate that it can be handled by at least one of our engines
   const ext = extname(file).toLowerCase();
   if (
@@ -193,12 +289,12 @@ export async function fileExecutionEngine(
     return undefined;
   }
 
-  const reorderedEngines = reorderEngines(project);
+  const reorderedEngines = await reorderEngines(project);
 
   // try to find an engine that claims this extension outright
   for (const [_, engine] of reorderedEngines) {
     if (engine.claimsFile(file, ext)) {
-      return engine;
+      return engine.launch(engineProjectContext(project));
     }
   }
 
@@ -211,6 +307,7 @@ export async function fileExecutionEngine(
     // with the filename so that the user knows which file is the problem.
     try {
       return markdownExecutionEngine(
+        project,
         markdown ? markdown.value : Deno.readTextFileSync(file),
         reorderedEngines,
         flags,
@@ -230,29 +327,30 @@ export async function fileExecutionEngine(
 export async function fileExecutionEngineAndTarget(
   file: string,
   flags: RenderFlags | undefined,
-  // markdown: MappedString | undefined,
   project: ProjectContext,
-) {
+): Promise<{ engine: ExecutionEngineInstance; target: ExecutionTarget }> {
   const cached = ensureFileInformationCache(project, file);
   if (cached && cached.engine && cached.target) {
     return { engine: cached.engine, target: cached.target };
   }
 
+  // Get the launched engine
   const engine = await fileExecutionEngine(file, flags, project);
   if (!engine) {
     throw new Error("Can't determine execution engine for " + file);
   }
-  const markdown = await project.resolveFullMarkdownForFile(engine, file);
 
-  const target = await engine.target(file, flags?.quiet, markdown, project);
+  const markdown = await project.resolveFullMarkdownForFile(engine, file);
+  const target = await engine.target(file, flags?.quiet, markdown);
   if (!target) {
     throw new Error("Can't determine execution target for " + file);
   }
 
+  // Cache the ExecutionEngineInstance
   cached.engine = engine;
   cached.target = target;
-  const result = { engine, target };
-  return result;
+
+  return { engine, target };
 }
 
 export function engineIgnoreDirs() {
@@ -283,24 +381,40 @@ export const engineCommand = new Command()
   .description(
     `Access functionality specific to quarto's different rendering engines.`,
   )
-  .action(() => {
-    engineCommand.showHelp();
-    Deno.exit(1);
-  });
+  .stopEarly()
+  .arguments("<engine-name:string> [args...:string]")
+  .action(async (options, engineName: string, ...args: string[]) => {
+    // Initialize project context and register external engines
+    // Dynamic import to avoid static import chain that triggers esbuild bundling issues
+    const { initializeProjectContextAndEngines } = await import(
+      "../command/command-utils.ts"
+    );
+    await initializeProjectContextAndEngines();
+
+    // Get the engine (now includes external ones)
+    const engine = executionEngine(engineName);
+    if (!engine) {
+      console.error(`Unknown engine: ${engineName}`);
+      console.error(
+        `Available engines: ${
+          executionEngines().map((e) => e.name).join(", ")
+        }`,
+      );
+      Deno.exit(1);
+    }
+
+    if (!engine.populateCommand) {
+      console.error(`Engine ${engineName} does not support subcommands`);
+      Deno.exit(1);
+    }
 
-kEngines.forEach((engine, name) => {
-  if (engine.populateCommand) {
-    const engineSubcommand = new Command();
-    // fill in some default behavior for each engine command
-    engineSubcommand
+    // Create temporary command and let engine populate it
+    const engineSubcommand = new Command()
       .description(
-        `Access functionality specific to the ${name} rendering engine.`,
-      )
-      .action(() => {
-        engineSubcommand.showHelp();
-        Deno.exit(1);
-      });
+        `Access functionality specific to the ${engineName} rendering engine.`,
+      );
     engine.populateCommand(engineSubcommand);
-    engineCommand.command(name, engineSubcommand);
-  }
-});
+
+    // Recursively parse remaining arguments
+    await engineSubcommand.parse(args);
+  });
diff --git a/src/execute/jupyter/jupyter-kernel.ts b/src/execute/jupyter/jupyter-kernel.ts
index dd864de4e20..3d9ac5348ef 100644
--- a/src/execute/jupyter/jupyter-kernel.ts
+++ b/src/execute/jupyter/jupyter-kernel.ts
@@ -9,23 +9,12 @@ import { join } from "../../deno_ral/path.ts";
 import { error, info, warning } from "../../deno_ral/log.ts";
 
 import { sleep } from "../../core/async.ts";
-import { quartoDataDir, quartoRuntimeDir } from "../../core/appdirs.ts";
-import { execProcess } from "../../core/process.ts";
-import { ProcessResult } from "../../core/process-types.ts";
-import { md5HashSync } from "../../core/hash.ts";
-import { resourcePath } from "../../core/resources.ts";
-import { pythonExec } from "../../core/jupyter/exec.ts";
 import {
   JupyterCapabilities,
   JupyterKernelspec,
 } from "../../core/jupyter/types.ts";
-import { jupyterCapabilities } from "../../core/jupyter/capabilities.ts";
-import {
-  jupyterCapabilitiesMessage,
-  jupyterInstallationMessage,
-  jupyterUnactivatedEnvMessage,
-  pythonInstallationMessage,
-} from "../../core/jupyter/jupyter-shared.ts";
+import { quartoAPI as quarto } from "../../core/quarto-api.ts";
+import type { ProcessResult } from "../../core/process-types.ts";
 
 import {
   kExecuteDaemon,
@@ -34,7 +23,6 @@ import {
 } from "../../config/constants.ts";
 
 import { ExecuteOptions } from "../types.ts";
-import { normalizePath } from "../../core/path.ts";
 import { isWindows } from "../../deno_ral/platform.ts";
 
 export interface JupyterExecuteOptions extends ExecuteOptions {
@@ -188,13 +176,13 @@ async function execJupyter(
   kernelspec: JupyterKernelspec,
 ): Promise<ProcessResult> {
   try {
-    const cmd = await pythonExec(kernelspec);
-    const result = await execProcess(
+    const cmd = await quarto.jupyter.pythonExec(kernelspec);
+    const result = await quarto.system.execProcess(
       {
         cmd: cmd[0],
         args: [
           ...cmd.slice(1),
-          resourcePath("jupyter/jupyter.py"),
+          quarto.path.resource("jupyter", "jupyter.py"),
         ],
         env: {
           // Force default matplotlib backend. something simillar is done here:
@@ -231,19 +219,19 @@ export async function printExecDiagnostics(
   kernelspec: JupyterKernelspec,
   stderr?: string,
 ) {
-  const caps = await jupyterCapabilities(kernelspec);
+  const caps = await quarto.jupyter.capabilities(kernelspec);
   if (caps && !caps.jupyter_core) {
     info("Python 3 installation:");
-    info(await jupyterCapabilitiesMessage(caps, "  "));
+    info(quarto.jupyter.capabilitiesMessage(caps, "  "));
     info("");
-    info(jupyterInstallationMessage(caps));
+    info(quarto.jupyter.installationMessage(caps));
     info("");
     maybePrintUnactivatedEnvMessage(caps);
   } else if (caps && !haveRequiredPython(caps)) {
     info(pythonVersionMessage());
-    info(await jupyterCapabilitiesMessage(caps, "  "));
+    info(quarto.jupyter.capabilitiesMessage(caps, "  "));
   } else if (!caps) {
-    info(pythonInstallationMessage());
+    info(quarto.jupyter.pythonInstallationMessage());
     info("");
   } else if (stderr && (stderr.indexOf("ModuleNotFoundError") !== -1)) {
     maybePrintUnactivatedEnvMessage(caps);
@@ -259,7 +247,7 @@ function pythonVersionMessage() {
 }
 
 function maybePrintUnactivatedEnvMessage(caps: JupyterCapabilities) {
-  const envMessage = jupyterUnactivatedEnvMessage(caps);
+  const envMessage = quarto.jupyter.unactivatedEnvMessage(caps);
   if (envMessage) {
     info(envMessage);
     info("");
@@ -313,7 +301,7 @@ function kernelTransportFile(target: string) {
   let transportsDir: string;
 
   try {
-    transportsDir = quartoRuntimeDir("jt");
+    transportsDir = quarto.path.runtime("jt");
   } catch (e) {
     console.error("Could create runtime directory for jupyter transport.");
     console.error(
@@ -327,13 +315,13 @@ function kernelTransportFile(target: string) {
     );
     throw e;
   }
-  const targetFile = normalizePath(target);
-  const hash = md5HashSync(targetFile).slice(0, 20);
+  const targetFile = quarto.path.absolute(target);
+  const hash = quarto.crypto.md5Hash(targetFile).slice(0, 20);
   return join(transportsDir, hash);
 }
 
 function kernelLogFile() {
-  const logsDir = quartoDataDir("logs");
+  const logsDir = quarto.path.dataDir("logs");
   const kernelLog = join(logsDir, "jupyter-kernel.log");
   if (!existsSync(kernelLog)) {
     Deno.writeTextFileSync(kernelLog, "");
diff --git a/src/execute/jupyter/jupyter.ts b/src/execute/jupyter/jupyter.ts
index 0dd36b65bfe..bbffe455092 100644
--- a/src/execute/jupyter/jupyter.ts
+++ b/src/execute/jupyter/jupyter.ts
@@ -9,26 +9,11 @@ import { satisfies } from "semver/mod.ts";
 
 import { existsSync } from "../../deno_ral/fs.ts";
 
-import { error } from "../../deno_ral/log.ts";
+import { error, info } from "../../deno_ral/log.ts";
 
 import * as ld from "../../core/lodash.ts";
 
-import { readYamlFromMarkdown } from "../../core/yaml.ts";
-import { isInteractiveSession } from "../../core/platform.ts";
-import { partitionMarkdown } from "../../core/pandoc/pandoc-partition.ts";
 
-import { dirAndStem, normalizePath } from "../../core/path.ts";
-import { runningInCI } from "../../core/ci-info.ts";
-
-import {
-  isJupyterNotebook,
-  jupyterAssets,
-  jupyterFromJSON,
-  jupyterKernelspecFromMarkdown,
-  jupyterToMarkdown,
-  kJupyterNotebookExtensions,
-  quartoMdToJupyter,
-} from "../../core/jupyter/jupyter.ts";
 import {
   kBaseFormat,
   kExecuteDaemon,
@@ -47,14 +32,6 @@ import {
   kRemoveHidden,
 } from "../../config/constants.ts";
 import { Format } from "../../config/types.ts";
-import {
-  isHtmlCompatible,
-  isHtmlDashboardOutput,
-  isIpynbOutput,
-  isLatexOutput,
-  isMarkdownOutput,
-  isPresentationOutput,
-} from "../../config/format.ts";
 
 import {
   executeKernelKeepalive,
@@ -62,20 +39,20 @@ import {
   JupyterExecuteOptions,
 } from "./jupyter-kernel.ts";
 import {
+  JupyterCapabilities,
   JupyterKernelspec,
   JupyterNotebook,
   JupyterWidgetDependencies,
 } from "../../core/jupyter/types.ts";
-import {
-  includesForJupyterWidgetDependencies,
-} from "../../core/jupyter/widgets.ts";
 
 import { RenderOptions, RenderResultFile } from "../../command/render/types.ts";
 import {
   DependenciesOptions,
+  EngineProjectContext,
   ExecuteOptions,
   ExecuteResult,
-  ExecutionEngine,
+  ExecutionEngineDiscovery,
+  ExecutionEngineInstance,
   ExecutionTarget,
   kJupyterEngine,
   kQmdExtensions,
@@ -83,47 +60,26 @@ import {
   PostProcessOptions,
   RunOptions,
 } from "../types.ts";
-import { postProcessRestorePreservedHtml } from "../engine-shared.ts";
-import { pythonExec } from "../../core/jupyter/exec.ts";
 
-import {
-  jupyterNotebookFiltered,
-  markdownFromNotebookFile,
-  markdownFromNotebookJSON,
-} from "../../core/jupyter/jupyter-filters.ts";
-import { asMappedString } from "../../core/lib/mapped-text.ts";
-import { MappedString, mappedStringFromFile } from "../../core/mapped-text.ts";
-import { breakQuartoMd } from "../../core/lib/break-quarto-md.ts";
-import { ProjectContext } from "../../project/types.ts";
-import { isQmdFile } from "../qmd.ts";
-import {
-  isJupyterPercentScript,
-  kJupyterPercentScriptExtensions,
-  markdownFromJupyterPercentScript,
-} from "./percent.ts";
-import {
-  inputFilesDir,
-  isServerShiny,
-  isServerShinyPython,
-} from "../../core/render.ts";
-import { jupyterCapabilities } from "../../core/jupyter/capabilities.ts";
-import { runExternalPreviewServer } from "../../preview/preview-server.ts";
-import { onCleanup } from "../../core/cleanup.ts";
-import {
-  ensureFileInformationCache,
-  projectOutputDir,
-} from "../../project/project-shared.ts";
-import { assert } from "testing/asserts";
+// Target data interface used by Jupyter
+interface JupyterTargetData {
+  transient: boolean;
+  kernelspec: JupyterKernelspec;
+}
 
-export const jupyterEngine: ExecutionEngine = {
-  name: kJupyterEngine,
+// Import quartoAPI directly since we're in core codebase
+import { quartoAPI as quarto } from "../../core/quarto-api.ts";
+import { MappedString } from "../../core/mapped-text.ts";
+import { kJupyterPercentScriptExtensions } from "./percent.ts";
+import type { CheckConfiguration } from "../../command/check/check.ts";
 
+export const jupyterEngineDiscovery: ExecutionEngineDiscovery = {
+  // we don't need init() because we use Quarto API directly
+  name: kJupyterEngine,
   defaultExt: ".qmd",
-
   defaultYaml: (kernel?: string) => [
     `jupyter: ${kernel || "python3"}`,
   ],
-
   defaultContent: (kernel?: string) => {
     kernel = kernel || "python3";
     const lang = kernel.startsWith("python")
@@ -141,495 +97,646 @@ export const jupyterEngine: ExecutionEngine = {
       return [];
     }
   },
-
   validExtensions: () => [
-    ...kJupyterNotebookExtensions,
+    ...quarto.jupyter.notebookExtensions,
     ...kJupyterPercentScriptExtensions,
     ...kQmdExtensions,
   ],
-
   claimsFile: (file: string, ext: string) => {
-    return kJupyterNotebookExtensions.includes(ext.toLowerCase()) ||
-      isJupyterPercentScript(file);
+    return quarto.jupyter.notebookExtensions.includes(ext.toLowerCase()) ||
+      quarto.jupyter.isPercentScript(file);
   },
-
   claimsLanguage: (language: string) => {
     // jupyter has to claim julia so that julia may also claim it without changing the old behavior
     // of preferring jupyter over julia engine by default
     return language.toLowerCase() === "julia";
   },
-
-  markdownForFile(file: string): Promise<MappedString> {
-    if (isJupyterNotebook(file)) {
-      const nbJSON = Deno.readTextFileSync(file);
-      const nb = JSON.parse(nbJSON) as JupyterNotebook;
-      return Promise.resolve(asMappedString(markdownFromNotebookJSON(nb)));
-    } else if (isJupyterPercentScript(file)) {
-      return Promise.resolve(
-        asMappedString(markdownFromJupyterPercentScript(file)),
-      );
-    } else {
-      return Promise.resolve(mappedStringFromFile(file));
-    }
-  },
-
-  target: async (
-    file: string,
-    _quiet?: boolean,
-    markdown?: MappedString,
-    project?: ProjectContext,
-  ): Promise<ExecutionTarget | undefined> => {
-    assert(markdown);
-    // at some point we'll resolve a full notebook/kernelspec
-    let nb: JupyterNotebook | undefined;
-    if (isJupyterNotebook(file)) {
-      const nbJSON = Deno.readTextFileSync(file);
-      const nbRaw = JSON.parse(nbJSON);
-
-      // https://github.com/quarto-dev/quarto-cli/issues/12374
-      // kernelspecs are not guaranteed to have a language field
-      // so we need to check for it and if not present
-      // use the language_info.name field
-      if (
-        nbRaw.metadata.kernelspec &&
-        nbRaw.metadata.kernelspec.language === undefined &&
-        nbRaw.metadata.language_info?.name
-      ) {
-        nbRaw.metadata.kernelspec.language = nbRaw.metadata.language_info.name;
-      }
-      nb = nbRaw as JupyterNotebook;
-    }
-
-    // cache check for percent script
-    const isPercentScript = isJupyterPercentScript(file);
-
-    // get the metadata
-    const metadata = readYamlFromMarkdown(markdown.value);
-
-    // if this is a text markdown file then create a notebook for use as the execution target
-    if (isQmdFile(file) || isPercentScript) {
-      // write a transient notebook
-      const [fileDir, fileStem] = dirAndStem(file);
-      // See #4802
-      // I don't love using an extension other than .ipynb for this file,
-      // but doing something like .quarto.ipynb would require a lot
-      // of additional changes to our file handling code (without changes,
-      // our output files would be called $FILE.quarto.html, which
-      // is not what we want). So for now, we'll use .quarto_ipynb
-      const notebook = join(fileDir, fileStem + ".quarto_ipynb");
-      const target = {
-        source: file,
-        input: notebook,
-        markdown: markdown!,
-        metadata,
-        data: { transient: true, kernelspec: {} },
-      };
-      nb = await createNotebookforTarget(target, project);
-      target.data.kernelspec = nb.metadata.kernelspec;
-      return target;
-    } else if (isJupyterNotebook(file)) {
-      return {
-        source: file,
-        input: file,
-        markdown: markdown!,
-        metadata,
-        data: { transient: false, kernelspec: nb?.metadata.kernelspec },
-      };
-    } else {
-      return undefined;
-    }
-  },
-
-  partitionedMarkdown: async (file: string, format?: Format) => {
-    if (isJupyterNotebook(file)) {
-      return partitionMarkdown(await markdownFromNotebookFile(file, format));
-    } else if (isJupyterPercentScript(file)) {
-      return partitionMarkdown(markdownFromJupyterPercentScript(file));
-    } else {
-      return partitionMarkdown(Deno.readTextFileSync(file));
-    }
+  canFreeze: true,
+  generatesFigures: true,
+  ignoreDirs: () => {
+    return ["venv", "env"];
   },
 
-  filterFormat: (
-    source: string,
-    options: RenderOptions,
-    format: Format,
-  ) => {
-    // if this is shiny server and the user hasn't set keep-hidden then
-    // set it as well as the attibutes required to remove the hidden blocks
-    if (
-      isServerShinyPython(format, kJupyterEngine) &&
-      format.render[kKeepHidden] !== true
-    ) {
-      format = {
-        ...format,
-        render: {
-          ...format.render,
-        },
-        metadata: {
-          ...format.metadata,
-        },
-      };
-      format.render[kKeepHidden] = true;
-      format.metadata[kRemoveHidden] = "all";
-    }
-
-    if (isJupyterNotebook(source)) {
-      // see if we want to override execute enabled
-      let executeEnabled: boolean | null | undefined;
+  checkInstallation: async (conf: CheckConfiguration) => {
+    const kIndent = "      ";
 
-      // we never execute for a dev server reload
-      if (options.devServerReload) {
-        executeEnabled = false;
-
-        // if a specific ipynb execution policy is set then reflect it
-      } else if (typeof (format.execute[kExecuteIpynb]) === "boolean") {
-        executeEnabled = format.execute[kExecuteIpynb];
-
-        // if a specific execution policy is set then reflect it
-      } else if (typeof (format.execute[kExecuteEnabled]) == "boolean") {
-        executeEnabled = format.execute[kExecuteEnabled];
+    // Helper functions (inline)
+    const checkCompleteMessage = (message: string) => {
+      if (!conf.jsonResult) {
+        quarto.console.completeMessage(message);
+      }
+    };
+    const checkInfoMsg = (message: string) => {
+      if (!conf.jsonResult) {
+        info(message);
+      }
+    };
 
-        // otherwise default to NOT executing
-      } else {
-        executeEnabled = false;
+    // Render check helper (inline)
+    const checkJupyterRender = async () => {
+      const json: Record<string, unknown> = {};
+      if (conf.jsonResult) {
+        (conf.jsonResult.render as Record<string, unknown>).jupyter = json;
       }
 
-      // return format w/ execution policy
-      if (executeEnabled !== undefined) {
-        return {
-          ...format,
-          execute: {
-            ...format.execute,
-            [kExecuteEnabled]: executeEnabled,
-          },
-        };
-        // otherwise just return the original format
+      const result = await quarto.system.checkRender({
+        content: `
+---
+title: "Title"
+---
+
+## Header
+
+\`\`\`{python}
+1 + 1
+\`\`\`
+`,
+        language: "python",
+        services: conf.services,
+      });
+
+      if (result.error) {
+        if (!conf.jsonResult) {
+          throw result.error;
+        } else {
+          json["error"] = result.error;
+        }
       } else {
-        return format;
+        json["ok"] = true;
       }
-      // not an ipynb
-    } else {
-      return format;
-    }
-  },
+    };
 
-  execute: async (options: ExecuteOptions): Promise<ExecuteResult> => {
-    // create the target input if we need to (could have been removed
-    // by the cleanup step of another render in this invocation)
-    if (
-      (isQmdFile(options.target.source) ||
-        isJupyterPercentScript(options.target.source)) &&
-      !existsSync(options.target.input)
-    ) {
-      await createNotebookforTarget(options.target);
+    // Main check logic
+    const kMessage = "Checking Python 3 installation....";
+    const jupyterJson: Record<string, unknown> = {};
+    if (conf.jsonResult) {
+      (conf.jsonResult.tools as Record<string, unknown>).jupyter = jupyterJson;
     }
-
-    // determine the kernel (it's in the custom execute options data)
-    let kernelspec = (options.target.data as JupyterTargetData).kernelspec;
-
-    // determine execution behavior
-    const execute = options.format.execute[kExecuteEnabled] !== false;
-    if (execute) {
-      // if yaml front matter has a different kernel then use it
-      if (isJupyterNotebook(options.target.source)) {
-        kernelspec = await ensureYamlKernelspec(options.target, kernelspec) ||
-          kernelspec;
+    let caps: JupyterCapabilities | undefined;
+    if (conf.jsonResult) {
+      caps = await quarto.jupyter.capabilities();
+    } else {
+      await quarto.console.withSpinner({
+        message: kMessage,
+        doneMessage: false,
+      }, async () => {
+        caps = await quarto.jupyter.capabilities();
+      });
+    }
+    if (caps) {
+      checkCompleteMessage(kMessage + "OK");
+      if (conf.jsonResult) {
+        jupyterJson["capabilities"] = await quarto.jupyter.capabilitiesJson(caps);
+      } else {
+        checkInfoMsg(await quarto.jupyter.capabilitiesMessage(caps, kIndent));
       }
-
-      // jupyter back end requires full path to input (to ensure that
-      // keepalive kernels are never re-used across multiple inputs
-      // that happen to share a hash)
-      const execOptions = {
-        ...options,
-        target: {
-          ...options.target,
-          input: normalizePath(options.target.input),
-        },
-      };
-
-      // use daemon by default if we are in an interactive session (terminal
-      // or rstudio) and not running in a CI system.
-      let executeDaemon = options.format.execute[kExecuteDaemon];
-      if (executeDaemon === null || executeDaemon === undefined) {
-        if (await disableDaemonForNotebook(options.target)) {
-          executeDaemon = false;
+      checkInfoMsg("");
+      if (caps.jupyter_core) {
+        if (await quarto.jupyter.kernelspecForLanguage("python")) {
+          const kJupyterMessage = "Checking Jupyter engine render....";
+          if (conf.jsonResult) {
+            await checkJupyterRender();
+          } else {
+            await quarto.console.withSpinner({
+              message: kJupyterMessage,
+              doneMessage: kJupyterMessage + "OK\n",
+            }, async () => {
+              await checkJupyterRender();
+            });
+          }
         } else {
-          executeDaemon = isInteractiveSession() && !runningInCI();
+          jupyterJson["kernels"] = [];
+          checkInfoMsg(
+            kIndent + "NOTE: No Jupyter kernel for Python found",
+          );
+          checkInfoMsg("");
         }
-      }
-      const jupyterExecOptions: JupyterExecuteOptions = {
-        kernelspec,
-        python_cmd: await pythonExec(kernelspec),
-        supervisor_pid: options.previewServer ? Deno.pid : undefined,
-        ...execOptions,
-      };
-      if (executeDaemon === false || executeDaemon === 0) {
-        await executeKernelOneshot(jupyterExecOptions);
       } else {
-        await executeKernelKeepalive(jupyterExecOptions);
+        const installMessage = quarto.jupyter.installationMessage(caps, kIndent);
+        checkInfoMsg(installMessage);
+        checkInfoMsg("");
+        jupyterJson["installed"] = false;
+        jupyterJson["how-to-install"] = installMessage;
+        const envMessage = quarto.jupyter.unactivatedEnvMessage(caps, kIndent);
+        if (envMessage) {
+          checkInfoMsg(envMessage);
+          checkInfoMsg("");
+          jupyterJson["env"] = {
+            "warning": envMessage,
+          };
+        }
       }
+    } else {
+      checkCompleteMessage(kMessage + "(None)\n");
+      const msg = quarto.jupyter.pythonInstallationMessage(kIndent);
+      jupyterJson["installed"] = false;
+      jupyterJson["how-to-install-python"] = msg;
+      checkInfoMsg(msg);
+      checkInfoMsg("");
     }
+  },
 
-    // convert to markdown and write to target (only run notebook filters
-    // if the source is an ipynb file)
-    const nbContents = await jupyterNotebookFiltered(
-      options.target.input,
-      isJupyterNotebook(options.target.source)
-        ? options.format.execute[kIpynbFilters]
-        : [],
-    );
+  // Launch method will return an instance with context
+  launch: (context: EngineProjectContext): ExecutionEngineInstance => {
+    return {
+      name: jupyterEngineDiscovery.name,
+      canFreeze: jupyterEngineDiscovery.canFreeze,
+
+      markdownForFile: (file: string): Promise<MappedString> => {
+        if (quarto.jupyter.isJupyterNotebook(file)) {
+          const nbJSON = Deno.readTextFileSync(file);
+          const nb = quarto.jupyter.fromJSON(nbJSON);
+          return Promise.resolve(
+            quarto.mappedString.fromString(
+              quarto.jupyter.markdownFromNotebookJSON(nb),
+            ),
+          );
+        } else if (quarto.jupyter.isPercentScript(file)) {
+          return Promise.resolve(
+            quarto.mappedString.fromString(
+              quarto.jupyter.percentScriptToMarkdown(file),
+            ),
+          );
+        } else {
+          return Promise.resolve(quarto.mappedString.fromFile(file));
+        }
+      },
 
-    const nb = jupyterFromJSON(nbContents);
+      target: async (
+        file: string,
+        quiet?: boolean,
+        markdown?: MappedString,
+      ): Promise<ExecutionTarget | undefined> => {
+        if (!markdown) {
+          markdown = await context.resolveFullMarkdownForFile(undefined, file);
+        }
 
-    // cells tagged 'shinylive' should be emmited as markdown
-    fixupShinyliveCodeCells(nb);
+        // at some point we'll resolve a full notebook/kernelspec
+        let nb: JupyterNotebook | undefined;
+        if (quarto.jupyter.isJupyterNotebook(file)) {
+          const nbJSON = Deno.readTextFileSync(file);
+          const nbRaw = JSON.parse(nbJSON);
+
+          // https://github.com/quarto-dev/quarto-cli/issues/12374
+          // kernelspecs are not guaranteed to have a language field
+          // so we need to check for it and if not present
+          // use the language_info.name field
+          if (
+            nbRaw.metadata.kernelspec &&
+            nbRaw.metadata.kernelspec.language === undefined &&
+            nbRaw.metadata.language_info?.name
+          ) {
+            nbRaw.metadata.kernelspec.language =
+              nbRaw.metadata.language_info.name;
+          }
+          nb = nbRaw as JupyterNotebook;
+        }
 
-    const assets = jupyterAssets(
-      options.target.input,
-      options.format.pandoc.to,
-    );
+        // cache check for percent script
+        const isPercentScript = quarto.jupyter.isPercentScript(file);
+
+        // get the metadata
+        const metadata = quarto.markdownRegex.extractYaml(markdown!.value);
+
+        // if this is a text markdown file then create a notebook for use as the execution target
+        if (quarto.path.isQmdFile(file) || isPercentScript) {
+          // write a transient notebook
+          const [fileDir, fileStem] = quarto.path.dirAndStem(file);
+          // See #4802
+          // I don't love using an extension other than .ipynb for this file,
+          // but doing something like .quarto.ipynb would require a lot
+          // of additional changes to our file handling code (without changes,
+          // our output files would be called $FILE.quarto.html, which
+          // is not what we want). So for now, we'll use .quarto_ipynb
+          const notebook = join(fileDir, fileStem + ".quarto_ipynb");
+          const target = {
+            source: file,
+            input: notebook,
+            markdown: markdown!,
+            metadata,
+            data: { transient: true, kernelspec: {} },
+          };
+          nb = await createNotebookforTarget(target);
+          target.data.kernelspec = nb.metadata.kernelspec;
+          return target;
+        } else if (quarto.jupyter.isJupyterNotebook(file)) {
+          return {
+            source: file,
+            input: file,
+            markdown: markdown!,
+            metadata,
+            data: { transient: false, kernelspec: nb?.metadata.kernelspec },
+          };
+        } else {
+          return undefined;
+        }
+      },
 
-    // Preserve the cell metadata if users have asked us to, or if this is dashboard
-    // that is coming from a non-qmd source
-    const preserveCellMetadata =
-      options.format.render[kNotebookPreserveCells] === true ||
-      (isHtmlDashboardOutput(options.format.identifier[kBaseFormat]) &&
-        !isQmdFile(options.target.source));
-
-    // NOTE: for perforance reasons the 'nb' is mutated in place
-    // by jupyterToMarkdown (we don't want to make a copy of a
-    // potentially very large notebook) so should not be relied
-    // on subseuqent to this call
-    const result = await jupyterToMarkdown(
-      nb,
-      {
-        executeOptions: options,
-        language: nb.metadata.kernelspec.language.toLowerCase(),
-        assets,
-        execute: options.format.execute,
-        keepHidden: options.format.render[kKeepHidden],
-        toHtml: isHtmlCompatible(options.format),
-        toLatex: isLatexOutput(options.format.pandoc),
-        toMarkdown: isMarkdownOutput(options.format),
-        toIpynb: isIpynbOutput(options.format.pandoc),
-        toPresentation: isPresentationOutput(options.format.pandoc),
-        figFormat: options.format.execute[kFigFormat],
-        figDpi: options.format.execute[kFigDpi],
-        figPos: options.format.render[kFigPos],
-        preserveCellMetadata,
-        preserveCodeCellYaml:
-          options.format.render[kIpynbProduceSourceNotebook] === true,
+      partitionedMarkdown: async (file: string, format?: Format) => {
+        if (quarto.jupyter.isJupyterNotebook(file)) {
+          return quarto.markdownRegex.partition(
+            await quarto.jupyter.markdownFromNotebookFile(file, format),
+          );
+        } else if (quarto.jupyter.isPercentScript(file)) {
+          return quarto.markdownRegex.partition(
+            quarto.jupyter.percentScriptToMarkdown(file),
+          );
+        } else {
+          return quarto.markdownRegex.partition(Deno.readTextFileSync(file));
+        }
       },
-    );
 
-    // return dependencies as either includes or raw dependencies
-    let includes: PandocIncludes | undefined;
-    let engineDependencies: Record<string, Array<unknown>> | undefined;
-    if (options.dependencies) {
-      includes = executeResultIncludes(options.tempDir, result.dependencies);
-    } else {
-      const dependencies = executeResultEngineDependencies(result.dependencies);
-      if (dependencies) {
-        engineDependencies = {
-          [kJupyterEngine]: dependencies,
-        };
-      }
-    }
+      filterFormat: (
+        source: string,
+        options: RenderOptions,
+        format: Format,
+      ) => {
+        // if this is shiny server and the user hasn't set keep-hidden then
+        // set it as well as the attibutes required to remove the hidden blocks
+        if (
+          quarto.format.isServerShinyPython(format, kJupyterEngine) &&
+          format.render[kKeepHidden] !== true
+        ) {
+          format = {
+            ...format,
+            render: {
+              ...format.render,
+            },
+            metadata: {
+              ...format.metadata,
+            },
+          };
+          format.render[kKeepHidden] = true;
+          format.metadata[kRemoveHidden] = "all";
+        }
 
-    // if it's a transient notebook then remove it
-    // (unless keep-ipynb was specified)
-    cleanupNotebook(options.target, options.format, options.project);
+        if (quarto.jupyter.isJupyterNotebook(source)) {
+          // see if we want to override execute enabled
+          let executeEnabled: boolean | null | undefined;
+
+          // we never execute for a dev server reload
+          if (options.devServerReload) {
+            executeEnabled = false;
+
+            // if a specific ipynb execution policy is set then reflect it
+          } else if (typeof (format.execute[kExecuteIpynb]) === "boolean") {
+            executeEnabled = format.execute[kExecuteIpynb];
+
+            // if a specific execution policy is set then reflect it
+          } else if (typeof (format.execute[kExecuteEnabled]) == "boolean") {
+            executeEnabled = format.execute[kExecuteEnabled];
+
+            // otherwise default to NOT executing
+          } else {
+            executeEnabled = false;
+          }
+
+          // return format w/ execution policy
+          if (executeEnabled !== undefined) {
+            return {
+              ...format,
+              execute: {
+                ...format.execute,
+                [kExecuteEnabled]: executeEnabled,
+              },
+            };
+            // otherwise just return the original format
+          } else {
+            return format;
+          }
+          // not an ipynb
+        } else {
+          return format;
+        }
+      },
 
-    // Create markdown from the result
-    const outputs = result.cellOutputs.map((output) => output.markdown);
-    if (result.notebookOutputs) {
-      if (result.notebookOutputs.prefix) {
-        outputs.unshift(result.notebookOutputs.prefix);
-      }
-      if (result.notebookOutputs.suffix) {
-        outputs.push(result.notebookOutputs.suffix);
-      }
-    }
-    const markdown = outputs.join("");
+      execute: async (options: ExecuteOptions): Promise<ExecuteResult> => {
+        // create the target input if we need to (could have been removed
+        // by the cleanup step of another render in this invocation)
+        if (
+          (quarto.path.isQmdFile(options.target.source) ||
+            quarto.jupyter.isPercentScript(options.target.source)) &&
+          !existsSync(options.target.input)
+        ) {
+          await createNotebookforTarget(options.target);
+        }
 
-    // return results
-    return {
-      engine: kJupyterEngine,
-      markdown: markdown,
-      supporting: [join(assets.base_dir, assets.supporting_dir)],
-      filters: [],
-      pandoc: result.pandoc,
-      includes,
-      engineDependencies,
-      preserve: result.htmlPreserve,
-      postProcess: result.htmlPreserve &&
-        (Object.keys(result.htmlPreserve).length > 0),
-    };
-  },
+        // determine the kernel (it's in the custom execute options data)
+        let kernelspec = (options.target.data as JupyterTargetData).kernelspec;
+
+        // determine execution behavior
+        const execute = options.format.execute[kExecuteEnabled] !== false;
+        if (execute) {
+          // if yaml front matter has a different kernel then use it
+          if (quarto.jupyter.isJupyterNotebook(options.target.source)) {
+            kernelspec =
+              await ensureYamlKernelspec(options.target, kernelspec) ||
+              kernelspec;
+          }
+
+          // jupyter back end requires full path to input (to ensure that
+          // keepalive kernels are never re-used across multiple inputs
+          // that happen to share a hash)
+          const execOptions = {
+            ...options,
+            target: {
+              ...options.target,
+              input: quarto.path.absolute(options.target.input),
+            },
+          };
+
+          // use daemon by default if we are in an interactive session (terminal
+          // or rstudio) and not running in a CI system.
+          let executeDaemon = options.format.execute[kExecuteDaemon];
+          if (executeDaemon === null || executeDaemon === undefined) {
+            if (await disableDaemonForNotebook(options.target)) {
+              executeDaemon = false;
+            } else {
+              executeDaemon = quarto.system.isInteractiveSession() &&
+                !quarto.system.runningInCI();
+            }
+          }
+          const jupyterExecOptions: JupyterExecuteOptions = {
+            kernelspec,
+            python_cmd: await quarto.jupyter.pythonExec(kernelspec),
+            supervisor_pid: options.previewServer ? Deno.pid : undefined,
+            ...execOptions,
+          };
+          if (executeDaemon === false || executeDaemon === 0) {
+            await executeKernelOneshot(jupyterExecOptions);
+          } else {
+            await executeKernelKeepalive(jupyterExecOptions);
+          }
+        }
 
-  executeTargetSkipped: cleanupNotebook,
+        // convert to markdown and write to target (only run notebook filters
+        // if the source is an ipynb file)
+        const nbContents = await quarto.jupyter.notebookFiltered(
+          options.target.input,
+          quarto.jupyter.isJupyterNotebook(options.target.source)
+            ? (options.format.execute[kIpynbFilters] as string[] || [])
+            : [],
+        );
 
-  dependencies: (options: DependenciesOptions) => {
-    const includes: PandocIncludes = {};
-    if (options.dependencies) {
-      const includeFiles = includesForJupyterWidgetDependencies(
-        options.dependencies as JupyterWidgetDependencies[],
-        options.tempDir,
-      );
-      if (includeFiles.inHeader) {
-        includes[kIncludeInHeader] = [includeFiles.inHeader];
-      }
-      if (includeFiles.afterBody) {
-        includes[kIncludeAfterBody] = [includeFiles.afterBody];
-      }
-    }
-    return Promise.resolve({
-      includes,
-    });
-  },
+        const nb = quarto.jupyter.fromJSON(nbContents);
 
-  run: async (options: RunOptions): Promise<void> => {
-    // semver doesn't support 4th component
-    const asSemVer = (version: string) => {
-      const v = version.split(".");
-      if (v.length > 3) {
-        return `${v[0]}.${v[1]}.${v[2]}`;
-      } else {
-        return version;
-      }
-    };
+        // cells tagged 'shinylive' should be emmited as markdown
+        fixupShinyliveCodeCells(nb);
 
-    // confirm required version of shiny
-    const kShinyVersion = ">=0.6";
-    let shinyError: string | undefined;
-    const caps = await jupyterCapabilities();
-    if (!caps?.shiny) {
-      shinyError =
-        "The shiny package is required for documents with server: shiny";
-    } else if (!satisfies(asSemVer(caps.shiny), asSemVer(kShinyVersion))) {
-      shinyError =
-        `The shiny package version must be ${kShinyVersion} for documents with server: shiny`;
-    }
-    if (shinyError) {
-      shinyError +=
-        "\n\nInstall the latest version of shiny with pip install --upgrade shiny\n";
-      error(shinyError);
-      throw new Error();
-    }
+        const assets = quarto.jupyter.assets(
+          options.target.input,
+          options.format.pandoc.to,
+        );
 
-    const [_dir] = dirAndStem(options.input);
-    const appFile = "app.py";
-    const cmd = [
-      ...await pythonExec(),
-      "-m",
-      "shiny",
-      "run",
-      appFile,
-      "--host",
-      options.host!,
-      "--port",
-      String(options.port!),
-    ];
-    if (options.reload) {
-      cmd.push("--reload");
-      cmd.push(`--reload-includes=*.py`);
-    }
+        // Preserve the cell metadata if users have asked us to, or if this is dashboard
+        // that is coming from a non-qmd source
+        const preserveCellMetadata =
+          options.format.render[kNotebookPreserveCells] === true ||
+          (quarto.format.isHtmlDashboardOutput(options.format.identifier[kBaseFormat]) &&
+            !quarto.path.isQmdFile(options.target.source));
+
+        // NOTE: for perforance reasons the 'nb' is mutated in place
+        // by jupyterToMarkdown (we don't want to make a copy of a
+        // potentially very large notebook) so should not be relied
+        // on subseuqent to this call
+        const result = await quarto.jupyter.toMarkdown(
+          nb,
+          {
+            executeOptions: options,
+            language: nb.metadata.kernelspec.language.toLowerCase(),
+            assets,
+            execute: options.format.execute,
+            keepHidden: options.format.render[kKeepHidden],
+            toHtml: quarto.format.isHtmlCompatible(options.format),
+            toLatex: quarto.format.isLatexOutput(options.format.pandoc),
+            toMarkdown: quarto.format.isMarkdownOutput(options.format),
+            toIpynb: quarto.format.isIpynbOutput(options.format.pandoc),
+            toPresentation: quarto.format.isPresentationOutput(options.format.pandoc),
+            figFormat: options.format.execute[kFigFormat],
+            figDpi: options.format.execute[kFigDpi],
+            figPos: options.format.render[kFigPos],
+            preserveCellMetadata,
+            preserveCodeCellYaml:
+              options.format.render[kIpynbProduceSourceNotebook] === true,
+          },
+        );
 
-    // start server
-    const readyPattern = /(http:\/\/(?:localhost|127\.0\.0\.1)\:\d+\/?[^\s]*)/;
-    const server = runExternalPreviewServer({
-      cmd,
-      readyPattern,
-      cwd: dirname(options.input),
-    });
-    await server.start();
+        // return dependencies as either includes or raw dependencies
+        let includes: PandocIncludes | undefined;
+        let engineDependencies: Record<string, Array<unknown>> | undefined;
+        if (options.dependencies) {
+          includes = quarto.jupyter.resultIncludes(
+            options.tempDir,
+            result.dependencies,
+          );
+        } else {
+          const dependencies = quarto.jupyter.resultEngineDependencies(
+            result.dependencies,
+          );
+          if (dependencies) {
+            engineDependencies = {
+              [kJupyterEngine]: dependencies,
+            };
+          }
+        }
 
-    // stop the server onCleanup
-    onCleanup(async () => {
-      await server.stop();
-    });
+        // if it's a transient notebook then remove it
+        // (unless keep-ipynb was specified)
+        cleanupNotebook(options.target, options.format, context);
+
+        // Create markdown from the result
+        const outputs = result.cellOutputs.map((output) => output.markdown);
+        if (result.notebookOutputs) {
+          if (result.notebookOutputs.prefix) {
+            outputs.unshift(result.notebookOutputs.prefix);
+          }
+          if (result.notebookOutputs.suffix) {
+            outputs.push(result.notebookOutputs.suffix);
+          }
+        }
+        const markdown = outputs.join("");
 
-    // notify when ready
-    if (options.onReady) {
-      options.onReady();
-    }
+        // return results
+        return {
+          engine: kJupyterEngine,
+          markdown: markdown,
+          supporting: [join(assets.base_dir, assets.supporting_dir)],
+          filters: [],
+          pandoc: result.pandoc,
+          includes,
+          engineDependencies,
+          preserve: result.htmlPreserve,
+          postProcess: result.htmlPreserve &&
+            (Object.keys(result.htmlPreserve).length > 0),
+        };
+      },
 
-    // run the server
-    return server.serve();
-  },
+      executeTargetSkipped: (target: ExecutionTarget, format: Format) => {
+        cleanupNotebook(target, format, context);
+      },
 
-  postRender: async (file: RenderResultFile, _context?: ProjectContext) => {
-    // discover non _files dir resources for server: shiny and amend app.py with them
-    if (isServerShiny(file.format)) {
-      const [dir] = dirAndStem(file.input);
-      const filesDir = join(dir, inputFilesDir(file.input));
-      const extraResources = file.resourceFiles
-        .filter((resource) => !resource.startsWith(filesDir))
-        .map((resource) => relative(dir, resource));
-      const appScriptDir = _context ? projectOutputDir(_context) : dir;
-      const appScript = join(appScriptDir, `app.py`);
-      if (existsSync(appScript)) {
-        // compute static assets
-        const staticAssets = [inputFilesDir(file.input), ...extraResources];
-
-        // check for (illegal) parent dir assets
-        const parentDirAssets = staticAssets.filter((asset) =>
-          asset.startsWith("..")
-        );
-        if (parentDirAssets.length > 0) {
-          error(
-            `References to files in parent directories found in document with server: shiny ` +
-              `(${basename(file.input)}): ${
-                JSON.stringify(parentDirAssets)
-              }. All resource files referenced ` +
-              `by Shiny documents must exist in the same directory as the source file.`,
+      dependencies: (options: DependenciesOptions) => {
+        const includes: PandocIncludes = {};
+        if (options.dependencies) {
+          const includeFiles = quarto.jupyter.widgetDependencyIncludes(
+            options.dependencies as JupyterWidgetDependencies[],
+            options.tempDir,
           );
-          throw new Error();
+          if (includeFiles.inHeader) {
+            includes[kIncludeInHeader] = [includeFiles.inHeader];
+          }
+          if (includeFiles.afterBody) {
+            includes[kIncludeAfterBody] = [includeFiles.afterBody];
+          }
         }
+        return Promise.resolve({
+          includes,
+        });
+      },
 
-        // In the app.py file, replace the placeholder with the list of static assets.
-        let appContents = Deno.readTextFileSync(appScript);
-        appContents = appContents.replace(
-          "##STATIC_ASSETS_PLACEHOLDER##",
-          JSON.stringify(staticAssets),
-        );
-        Deno.writeTextFileSync(appScript, appContents);
-      }
-    }
-  },
+      postprocess: (options: PostProcessOptions) => {
+        quarto.text.postProcessRestorePreservedHtml(options);
+        return Promise.resolve();
+      },
 
-  postprocess: (options: PostProcessOptions) => {
-    postProcessRestorePreservedHtml(options);
-    return Promise.resolve();
-  },
+      canKeepSource: (target: ExecutionTarget) => {
+        return !quarto.jupyter.isJupyterNotebook(target.source);
+      },
 
-  canFreeze: true,
+      intermediateFiles: (input: string) => {
+        const files: string[] = [];
+        const [fileDir, fileStem] = quarto.path.dirAndStem(input);
+
+        if (!quarto.jupyter.isJupyterNotebook(input)) {
+          files.push(join(fileDir, fileStem + ".ipynb"));
+        } else if (
+          [...kQmdExtensions, ...kJupyterPercentScriptExtensions].some(
+            (ext) => {
+              return existsSync(join(fileDir, fileStem + ext));
+            },
+          )
+        ) {
+          files.push(input);
+        }
+        return files;
+      },
 
-  generatesFigures: true,
+      run: async (options: RunOptions): Promise<void> => {
+        // semver doesn't support 4th component
+        const asSemVer = (version: string) => {
+          const v = version.split(".");
+          if (v.length > 3) {
+            return `${v[0]}.${v[1]}.${v[2]}`;
+          } else {
+            return version;
+          }
+        };
 
-  ignoreDirs: () => {
-    return ["venv", "env"];
-  },
+        // confirm required version of shiny
+        const kShinyVersion = ">=0.6";
+        let shinyError: string | undefined;
+        const caps = await quarto.jupyter.capabilities();
+        if (!caps?.shiny) {
+          shinyError =
+            "The shiny package is required for documents with server: shiny";
+        } else if (
+          !satisfies(asSemVer(caps.shiny), asSemVer(kShinyVersion))
+        ) {
+          shinyError =
+            `The shiny package version must be ${kShinyVersion} for documents with server: shiny`;
+        }
+        if (shinyError) {
+          shinyError +=
+            "\n\nInstall the latest version of shiny with pip install --upgrade shiny\n";
+          error(shinyError);
+          throw new Error();
+        }
 
-  canKeepSource: (target: ExecutionTarget) => {
-    return !isJupyterNotebook(target.source);
-  },
+        const [_dir] = quarto.path.dirAndStem(options.input);
+        const appFile = "app.py";
+        const cmd = [
+          ...await quarto.jupyter.pythonExec(),
+          "-m",
+          "shiny",
+          "run",
+          appFile,
+          "--host",
+          options.host!,
+          "--port",
+          String(options.port!),
+        ];
+        if (options.reload) {
+          cmd.push("--reload");
+          cmd.push(`--reload-includes=*.py`);
+        }
 
-  intermediateFiles: (input: string) => {
-    const files: string[] = [];
-    const [fileDir, fileStem] = dirAndStem(input);
-
-    if (!isJupyterNotebook(input)) {
-      files.push(join(fileDir, fileStem + ".ipynb"));
-    } else if (
-      [...kQmdExtensions, ...kJupyterPercentScriptExtensions].some((ext) => {
-        return existsSync(join(fileDir, fileStem + ext));
-      })
-    ) {
-      files.push(input);
-    }
-    return files;
+        // start server
+        const readyPattern =
+          /(http:\/\/(?:localhost|127\.0\.0\.1)\:\d+\/?[^\s]*)/;
+        const server = quarto.system.runExternalPreviewServer({
+          cmd,
+          readyPattern,
+          cwd: dirname(options.input),
+        });
+        await server.start();
+
+        // stop the server onCleanup
+        quarto.system.onCleanup(async () => {
+          await server.stop();
+        });
+
+        // notify when ready
+        if (options.onReady) {
+          options.onReady();
+        }
+
+        // run the server
+        return server.serve();
+      },
+
+      postRender: async (file: RenderResultFile) => {
+        // discover non _files dir resources for server: shiny and amend app.py with them
+        if (quarto.format.isServerShiny(file.format)) {
+          const [dir] = quarto.path.dirAndStem(file.input);
+          const filesDir = join(dir, quarto.path.inputFilesDir(file.input));
+          const extraResources = file.resourceFiles
+            .filter((resource) => !resource.startsWith(filesDir))
+            .map((resource) => relative(dir, resource));
+          const appScriptDir = context ? context.getOutputDirectory() : dir;
+          const appScript = join(appScriptDir, `app.py`);
+          if (existsSync(appScript)) {
+            // compute static assets
+            const staticAssets = [
+              quarto.path.inputFilesDir(file.input),
+              ...extraResources,
+            ];
+
+            // check for (illegal) parent dir assets
+            const parentDirAssets = staticAssets.filter((asset) =>
+              asset.startsWith("..")
+            );
+            if (parentDirAssets.length > 0) {
+              error(
+                `References to files in parent directories found in document with server: shiny ` +
+                  `(${basename(file.input)}): ${
+                    JSON.stringify(parentDirAssets)
+                  }. All resource files referenced ` +
+                  `by Shiny documents must exist in the same directory as the source file.`,
+              );
+              throw new Error();
+            }
+
+            // In the app.py file, replace the placeholder with the list of static assets.
+            let appContents = Deno.readTextFileSync(appScript);
+            appContents = appContents.replace(
+              "##STATIC_ASSETS_PLACEHOLDER##",
+              JSON.stringify(staticAssets),
+            );
+            Deno.writeTextFileSync(appScript, appContents);
+          }
+        }
+      },
+    };
   },
 };
 
@@ -638,11 +745,11 @@ async function ensureYamlKernelspec(
   kernelspec: JupyterKernelspec,
 ) {
   const markdown = target.markdown.value;
-  const yamlJupyter = readYamlFromMarkdown(markdown)?.jupyter;
+  const yamlJupyter = quarto.markdownRegex.extractYaml(markdown)?.jupyter;
   if (yamlJupyter && typeof yamlJupyter !== "boolean") {
-    const [yamlKernelspec, _] = await jupyterKernelspecFromMarkdown(markdown);
+    const [yamlKernelspec, _] = await quarto.jupyter.kernelspecFromMarkdown(markdown);
     if (yamlKernelspec.name !== kernelspec?.name) {
-      const nb = jupyterFromJSON(Deno.readTextFileSync(target.source));
+      const nb = quarto.jupyter.fromJSON(Deno.readTextFileSync(target.source));
       nb.metadata.kernelspec = yamlKernelspec;
       Deno.writeTextFileSync(target.source, JSON.stringify(nb, null, 2));
       return yamlKernelspec;
@@ -672,9 +779,9 @@ function fixupShinyliveCodeCells(nb: JupyterNotebook) {
 
 async function createNotebookforTarget(
   target: ExecutionTarget,
-  project?: ProjectContext,
+  project?: EngineProjectContext,
 ) {
-  const nb = await quartoMdToJupyter(target.markdown.value, true, project);
+  const nb = await quarto.jupyter.quartoMdToJupyter(target.markdown.value, true, project);
   Deno.writeTextFileSync(target.input, JSON.stringify(nb, null, 2));
   return nb;
 }
@@ -696,7 +803,7 @@ async function disableDaemonForNotebook(target: ExecutionTarget) {
     "rm",
     "rmdir",
   ];
-  const nb = await breakQuartoMd(target.markdown);
+  const nb = await quarto.markdownRegex.breakQuartoMd(target.markdown);
   for (const cell of nb.cells) {
     if (ld.isObject(cell.cell_type)) {
       const language = (cell.cell_type as { language: string }).language;
@@ -719,12 +826,12 @@ async function disableDaemonForNotebook(target: ExecutionTarget) {
 function cleanupNotebook(
   target: ExecutionTarget,
   format: Format,
-  project: ProjectContext,
+  project: EngineProjectContext,
 ) {
   // Make notebook non-transient when keep-ipynb is set
   const data = target.data as JupyterTargetData;
-  const cached = ensureFileInformationCache(project, target.source);
-  if (data.transient && format.execute[kKeepIpynb]) {
+  const cached = project.fileInformationCache.get(target.source);
+  if (cached && data.transient && format.execute[kKeepIpynb]) {
     if (cached.target && cached.target.data) {
       (cached.target.data as JupyterTargetData).transient = false;
     }
@@ -742,7 +849,7 @@ export function executeResultIncludes(
 ): PandocIncludes | undefined {
   if (widgetDependencies) {
     const includes: PandocIncludes = {};
-    const includeFiles = includesForJupyterWidgetDependencies(
+    const includeFiles = quarto.jupyter.widgetDependencyIncludes(
       [widgetDependencies],
       tempDir,
     );
diff --git a/src/execute/jupyter/percent.ts b/src/execute/jupyter/percent.ts
index d73e8d2a307..70d6b105f06 100644
--- a/src/execute/jupyter/percent.ts
+++ b/src/execute/jupyter/percent.ts
@@ -6,13 +6,11 @@
 
 import { extname } from "../../deno_ral/path.ts";
 
-import { lines } from "../../core/text.ts";
-import { trimEmptyLines } from "../../core/lib/text.ts";
 import { Metadata } from "../../config/types.ts";
-import { asYamlText } from "../../core/jupyter/jupyter-fixups.ts";
 import { pandocAttrKeyvalueFromText } from "../../core/pandoc/pandoc-attr.ts";
 import { kCellRawMimeType } from "../../config/constants.ts";
 import { mdFormatOutput, mdRawOutput } from "../../core/jupyter/jupyter.ts";
+import { quartoAPI as quarto } from "../../core/quarto-api.ts";
 
 export const kJupyterPercentScriptExtensions = [
   ".py",
@@ -39,7 +37,7 @@ export function markdownFromJupyterPercentScript(file: string) {
   // break into cells
   const cells: PercentCell[] = [];
   const activeCell = () => cells[cells.length - 1];
-  for (const line of lines(Deno.readTextFileSync(file).trim())) {
+  for (const line of quarto.text.lines(Deno.readTextFileSync(file).trim())) {
     const header = percentCellHeader(line);
     if (header) {
       cells.push({ header, lines: [] });
@@ -65,11 +63,11 @@ export function markdownFromJupyterPercentScript(file: string) {
   };
 
   return cells.reduce((markdown, cell) => {
-    const cellLines = trimEmptyLines(cell.lines);
+    const cellLines = quarto.text.trimEmptyLines(cell.lines);
     if (cell.header.type === "code") {
       if (cell.header.metadata) {
-        const yamlText = asYamlText(cell.header.metadata);
-        cellLines.unshift(...lines(yamlText).map((line) => `#| ${line}`));
+        const yamlText = quarto.text.asYamlText(cell.header.metadata);
+        cellLines.unshift(...quarto.text.lines(yamlText).map((line) => `#| ${line}`));
       }
       markdown += asCell(["```{" + language + "}", ...cellLines, "```"]);
     } else if (cell.header.type === "markdown") {
@@ -79,10 +77,10 @@ export function markdownFromJupyterPercentScript(file: string) {
       const format = cell.header?.metadata?.["format"];
       const mimeType = cell.header.metadata?.[kCellRawMimeType];
       if (typeof mimeType === "string") {
-        const rawBlock = mdRawOutput(mimeType, lines(rawContent));
+        const rawBlock = mdRawOutput(mimeType, quarto.text.lines(rawContent));
         rawContent = rawBlock || rawContent;
       } else if (typeof format === "string") {
-        rawContent = mdFormatOutput(format, lines(rawContent));
+        rawContent = mdFormatOutput(format, quarto.text.lines(rawContent));
       }
       markdown += rawContent;
     }
diff --git a/src/execute/markdown.ts b/src/execute/markdown.ts
index f802974de3a..b7d27a60cd0 100644
--- a/src/execute/markdown.ts
+++ b/src/execute/markdown.ts
@@ -6,90 +6,104 @@
 
 import { extname } from "../deno_ral/path.ts";
 
-import { readYamlFromMarkdown } from "../core/yaml.ts";
-import { partitionMarkdown } from "../core/pandoc/pandoc-partition.ts";
-
 import {
   DependenciesOptions,
   ExecuteOptions,
-  ExecutionEngine,
+  ExecutionEngineDiscovery,
+  ExecutionEngineInstance,
   ExecutionTarget,
   kMarkdownEngine,
   kQmdExtensions,
   PostProcessOptions,
 } from "./types.ts";
-import { languagesInMarkdown } from "./engine-shared.ts";
-import { mappedStringFromFile } from "../core/mapped-text.ts";
 import { MappedString } from "../core/lib/text-types.ts";
+import { EngineProjectContext } from "../project/types.ts";
+import type { QuartoAPI } from "../core/quarto-api.ts";
 
 export const kMdExtensions = [".md", ".markdown"];
 
-export const markdownEngine: ExecutionEngine = {
-  name: kMarkdownEngine,
+let quarto: QuartoAPI;
 
-  defaultExt: ".qmd",
+/**
+ * Markdown engine implementation with discovery and launch capabilities
+ */
+export const markdownEngineDiscovery: ExecutionEngineDiscovery = {
+  init: (quartoAPI) => {
+    quarto = quartoAPI;
+  },
 
+  name: kMarkdownEngine,
+  defaultExt: ".qmd",
   defaultYaml: () => [],
-
   defaultContent: () => [],
-
   validExtensions: () => kQmdExtensions.concat(kMdExtensions),
-
   claimsFile: (_file: string, ext: string) => {
     return kMdExtensions.includes(ext.toLowerCase());
   },
   claimsLanguage: (_language: string) => {
     return false;
   },
-  markdownForFile(file: string): Promise<MappedString> {
-    return Promise.resolve(mappedStringFromFile(file));
-  },
-
-  target: (file: string, _quiet?: boolean, markdown?: MappedString) => {
-    if (markdown === undefined) {
-      markdown = mappedStringFromFile(file);
-    }
-    const target: ExecutionTarget = {
-      source: file,
-      input: file,
-      markdown,
-      metadata: readYamlFromMarkdown(markdown.value),
-    };
-    return Promise.resolve(target);
-  },
-
-  partitionedMarkdown: (file: string) => {
-    return Promise.resolve(partitionMarkdown(Deno.readTextFileSync(file)));
-  },
-
-  execute: (options: ExecuteOptions) => {
-    // read markdown
-    const markdown = options.target.markdown.value;
+  canFreeze: false,
+  generatesFigures: false,
 
-    // if it's plain md, validate that it doesn't have executable cells in it
-    if (extname(options.target.input).toLowerCase() === ".md") {
-      const languages = languagesInMarkdown(markdown);
-      if (languages.size > 0) {
-        throw new Error(
-          "You must use the .qmd extension for documents with executable code.",
+  /**
+   * Launch a dynamic execution engine with project context
+   */
+  launch: (context: EngineProjectContext): ExecutionEngineInstance => {
+    return {
+      name: markdownEngineDiscovery.name,
+      canFreeze: markdownEngineDiscovery.canFreeze,
+
+      markdownForFile(file: string): Promise<MappedString> {
+        return Promise.resolve(quarto.mappedString.fromFile(file));
+      },
+
+      target: (file: string, _quiet?: boolean, markdown?: MappedString) => {
+        const md = markdown ?? quarto.mappedString.fromFile(file);
+        const target: ExecutionTarget = {
+          source: file,
+          input: file,
+          markdown: md,
+          metadata: quarto.markdownRegex.extractYaml(md.value),
+        };
+        return Promise.resolve(target);
+      },
+
+      partitionedMarkdown: (file: string) => {
+        return Promise.resolve(
+          quarto.markdownRegex.partition(Deno.readTextFileSync(file)),
         );
-      }
-    }
-
-    return Promise.resolve({
-      engine: kMarkdownEngine,
-      markdown,
-      supporting: [],
-      filters: [],
-    });
-  },
-  dependencies: (_options: DependenciesOptions) => {
-    return Promise.resolve({
-      includes: {},
-    });
+      },
+
+      execute: (options: ExecuteOptions) => {
+        // read markdown
+        const markdown = options.target.markdown.value;
+
+        // if it's plain md, validate that it doesn't have executable cells in it
+        if (extname(options.target.input).toLowerCase() === ".md") {
+          const languages = quarto.markdownRegex.getLanguages(markdown);
+          if (languages.size > 0) {
+            throw new Error(
+              "You must use the .qmd extension for documents with executable code.",
+            );
+          }
+        }
+
+        return Promise.resolve({
+          engine: kMarkdownEngine,
+          markdown,
+          supporting: [],
+          filters: [],
+        });
+      },
+
+      dependencies: (_options: DependenciesOptions) => {
+        return Promise.resolve({
+          includes: {},
+        });
+      },
+
+      postprocess: (_options: PostProcessOptions) => Promise.resolve(),
+    };
   },
-  postprocess: (_options: PostProcessOptions) => Promise.resolve(),
-
-  canFreeze: false,
-  generatesFigures: false,
 };
diff --git a/src/execute/rmd.ts b/src/execute/rmd.ts
index 07589a60bdc..1edd12497b1 100644
--- a/src/execute/rmd.ts
+++ b/src/execute/rmd.ts
@@ -10,16 +10,16 @@ import { basename, extname } from "../deno_ral/path.ts";
 
 import * as colors from "fmt/colors";
 
-import { execProcess } from "../core/process.ts";
-import { rBinaryPath, resourcePath } from "../core/resources.ts";
-import { readYamlFromMarkdown } from "../core/yaml.ts";
-import { partitionMarkdown } from "../core/pandoc/pandoc-partition.ts";
+// Import quartoAPI directly since we're in core codebase
+import { quartoAPI as quarto } from "../core/quarto-api.ts";
+
+import { rBinaryPath } from "../core/resources.ts";
 
 import { kCodeLink } from "../config/constants.ts";
-import { isServerShiny } from "../core/render.ts";
 
 import {
   checkRBinary,
+  KnitrCapabilities,
   knitrCapabilities,
   knitrCapabilitiesMessage,
   knitrInstallationMessage,
@@ -30,27 +30,25 @@ import {
   DependenciesResult,
   ExecuteOptions,
   ExecuteResult,
-  ExecutionEngine,
   ExecutionTarget,
   kKnitrEngine,
   PostProcessOptions,
   RunOptions,
+  ExecutionEngineDiscovery,
+  ExecutionEngineInstance,
+  EngineProjectContext,
 } from "./types.ts";
-import { postProcessRestorePreservedHtml } from "./engine-shared.ts";
-import { mappedStringFromFile } from "../core/mapped-text.ts";
+import type { CheckConfiguration } from "../command/check/check.ts";
 import {
   asMappedString,
   mappedIndexToLineCol,
   MappedString,
 } from "../core/lib/mapped-text.ts";
-import { lineColToIndex } from "../core/lib/text.ts";
-import { executeInlineCodeHandler } from "../core/execute-inline.ts";
-import { globalTempContext } from "../core/temp.ts";
-import { ProjectContext } from "../project/types.ts";
 
 const kRmdExtensions = [".rmd", ".rmarkdown"];
 
-export const knitrEngine: ExecutionEngine = {
+export const knitrEngineDiscovery: ExecutionEngineDiscovery = {
+  // Discovery methods
   name: kKnitrEngine,
 
   defaultExt: ".qmd",
@@ -74,180 +72,329 @@ export const knitrEngine: ExecutionEngine = {
     return language.toLowerCase() === "r";
   },
 
-  async markdownForFile(file: string): Promise<MappedString> {
-    const isSpin = isKnitrSpinScript(file);
-    if (isSpin) {
-      return asMappedString(await markdownFromKnitrSpinScript(file));
-    }
-    return mappedStringFromFile(file);
+  canFreeze: true,
+
+  generatesFigures: true,
+
+  ignoreDirs: () => {
+    return ["renv", "packrat", "rsconnect"];
   },
 
-  target: async (
-    file: string,
-    _quiet: boolean | undefined,
-    markdown: MappedString | undefined,
-    project: ProjectContext,
-  ): Promise<ExecutionTarget | undefined> => {
-    markdown = await project.resolveFullMarkdownForFile(
-      knitrEngine,
-      file,
-      markdown,
-    );
-    let metadata;
-    try {
-      metadata = readYamlFromMarkdown(markdown.value);
-    } catch (e) {
-      if (!(e instanceof Error)) throw e;
-      error(`Error reading metadata from ${file}.\n${e.message}`);
-      throw e;
-    }
-    const target: ExecutionTarget = {
-      source: file,
-      input: file,
-      markdown,
-      metadata,
+  checkInstallation: async (conf: CheckConfiguration) => {
+    const kIndent = "      ";
+
+    // Helper functions (inline)
+    const checkCompleteMessage = (message: string) => {
+      if (!conf.jsonResult) {
+        quarto.console.completeMessage(message);
+      }
     };
-    return Promise.resolve(target);
-  },
+    const checkInfoMsg = (message: string) => {
+      if (!conf.jsonResult) {
+        info(message);
+      }
+    };
+
+    // Render check helper (inline)
+    const checkKnitrRender = async () => {
+      const json: Record<string, unknown> = {};
+      if (conf.jsonResult) {
+        (conf.jsonResult.render as Record<string, unknown>).knitr = json;
+      }
+
+      const result = await quarto.system.checkRender({
+        content: `
+---
+title: "Title"
+---
 
-  partitionedMarkdown: async (file: string) => {
-    if (isKnitrSpinScript(file)) {
-      return partitionMarkdown(await markdownFromKnitrSpinScript(file));
+## Header
+
+\`\`\`{r}
+1 + 1
+\`\`\`
+`,
+        language: "r",
+        services: conf.services,
+      });
+
+      if (result.error) {
+        if (!conf.jsonResult) {
+          throw result.error;
+        } else {
+          json["error"] = result.error;
+        }
+      } else {
+        json["ok"] = true;
+      }
+    };
+
+    // Main check logic
+    const kMessage = "Checking R installation...........";
+    let caps: KnitrCapabilities | undefined;
+    let rBin: string | undefined;
+    const json: Record<string, unknown> = {};
+    if (conf.jsonResult) {
+      (conf.jsonResult.tools as Record<string, unknown>).knitr = json;
+    }
+    const knitrCb = async () => {
+      rBin = await checkRBinary();
+      caps = await knitrCapabilities(rBin);
+    };
+    if (conf.jsonResult) {
+      await knitrCb();
     } else {
-      return partitionMarkdown(Deno.readTextFileSync(file));
+      await quarto.console.withSpinner({
+        message: kMessage,
+        doneMessage: false,
+      }, knitrCb);
+    }
+    if (rBin && caps) {
+      checkCompleteMessage(kMessage + "OK");
+      if (conf.jsonResult) {
+        json["capabilities"] = caps;
+      } else {
+        checkInfoMsg(knitrCapabilitiesMessage(caps, kIndent));
+      }
+      checkInfoMsg("");
+      if (caps.packages.rmarkdownVersOk && caps.packages.knitrVersOk) {
+        const kKnitrMessage = "Checking Knitr engine render......";
+        if (conf.jsonResult) {
+          await checkKnitrRender();
+        } else {
+          await quarto.console.withSpinner({
+            message: kKnitrMessage,
+            doneMessage: kKnitrMessage + "OK\n",
+          }, async () => {
+            await checkKnitrRender();
+          });
+        }
+      } else {
+        // show install message if not available
+        // or update message if not up to date
+        json["installed"] = false;
+        if (!caps.packages.knitr || !caps.packages.knitrVersOk) {
+          const msg = knitrInstallationMessage(
+            kIndent,
+            "knitr",
+            !!caps.packages.knitr && !caps.packages.knitrVersOk,
+          );
+          checkInfoMsg(msg);
+          json["how-to-install-knitr"] = msg;
+        }
+        if (!caps.packages.rmarkdown || !caps.packages.rmarkdownVersOk) {
+          const msg = knitrInstallationMessage(
+            kIndent,
+            "rmarkdown",
+            !!caps.packages.rmarkdown && !caps.packages.rmarkdownVersOk,
+          );
+          checkInfoMsg(msg);
+          json["how-to-install-rmarkdown"] = msg;
+        }
+        checkInfoMsg("");
+      }
+    } else if (rBin === undefined) {
+      checkCompleteMessage(kMessage + "(None)\n");
+      const msg = rInstallationMessage(kIndent);
+      checkInfoMsg(msg);
+      json["installed"] = false;
+      checkInfoMsg("");
+    } else if (caps === undefined) {
+      json["installed"] = false;
+      checkCompleteMessage(kMessage + "(None)\n");
+      const msgs = [
+        `R succesfully found at ${rBin}.`,
+        "However, a problem was encountered when checking configurations of packages.",
+        "Please check your installation of R.",
+      ];
+      msgs.forEach((msg) => {
+        checkInfoMsg(msg);
+      });
+      json["error"] = msgs.join("\n");
+      checkInfoMsg("");
     }
   },
 
-  execute: async (options: ExecuteOptions): Promise<ExecuteResult> => {
-    const inputBasename = basename(options.target.input);
-    const inputStem = basename(inputBasename, extname(inputBasename));
-
-    const result = await callR<ExecuteResult>(
-      "execute",
-      {
-        ...options,
-        target: undefined,
-        input: options.target.input,
-        markdown: resolveInlineExecute(options.target.markdown.value),
+  // Launch method that returns an instance with context closure
+  launch: (context: EngineProjectContext): ExecutionEngineInstance => {
+    return {
+      // Instance properties (required by interface)
+      name: kKnitrEngine,
+      canFreeze: true,
+
+      // Instance methods
+      async markdownForFile(file: string): Promise<MappedString> {
+        const isSpin = isKnitrSpinScript(file);
+        if (isSpin) {
+          return asMappedString(await markdownFromKnitrSpinScript(file));
+        }
+        return quarto.mappedString.fromFile(file);
       },
-      options.tempDir,
-      options.project?.isSingleFile ? undefined : options.projectDir,
-      options.quiet,
-      // fixup .rmarkdown file references
-      (output) => {
-        output = output.replaceAll(
-          `${inputStem}.rmarkdown`,
-          () => inputBasename,
+
+      target: async (
+        file: string,
+        _quiet?: boolean,
+        markdown?: MappedString,
+      ): Promise<ExecutionTarget | undefined> => {
+        const resolvedMarkdown = await context.resolveFullMarkdownForFile(
+          knitrEngineDiscovery.launch(context),
+          file,
+          markdown,
         );
+        let metadata;
+        try {
+          metadata = quarto.markdownRegex.extractYaml(resolvedMarkdown.value);
+        } catch (e) {
+          if (!(e instanceof Error)) throw e;
+          error(`Error reading metadata from ${file}.\n${e.message}`);
+          throw e;
+        }
+        const target: ExecutionTarget = {
+          source: file,
+          input: file,
+          markdown: resolvedMarkdown,
+          metadata,
+        };
+        return Promise.resolve(target);
+      },
 
-        const m = output.match(/^Quitting from lines (\d+)-(\d+)/m);
-        if (m) {
-          const f1 = lineColToIndex(options.target.markdown.value);
-          const f2 = mappedIndexToLineCol(options.target.markdown);
-
-          const newLine1 = f2(f1({ line: Number(m[1]) - 1, column: 0 })).line +
-            1;
-          const newLine2 = f2(f1({ line: Number(m[2]) - 1, column: 0 })).line +
-            1;
-          output = output.replace(
-            /^Quitting from lines (\d+)-(\d+)/m,
-            `\n\nQuitting from lines ${newLine1}-${newLine2}`,
+      partitionedMarkdown: async (file: string) => {
+        if (isKnitrSpinScript(file)) {
+          return quarto.markdownRegex.partition(
+            await markdownFromKnitrSpinScript(file),
           );
+        } else {
+          return quarto.markdownRegex.partition(Deno.readTextFileSync(file));
         }
-
-        output = filterAlwaysAllowHtml(output);
-
-        return output;
       },
-    );
-    const includes = result.includes as unknown;
-    // knitr appears to return [] instead of {} as the value for includes.
-    if (Array.isArray(includes) && includes.length === 0) {
-      result.includes = {};
-    }
-    return result;
-  },
 
-  dependencies: (options: DependenciesOptions) => {
-    return callR<DependenciesResult>(
-      "dependencies",
-      { ...options, target: undefined, input: options.target.input },
-      options.tempDir,
-      options.projectDir,
-      options.quiet,
-    );
-  },
+      execute: async (options: ExecuteOptions): Promise<ExecuteResult> => {
+        const inputBasename = basename(options.target.input);
+        const inputStem = basename(inputBasename, extname(inputBasename));
+
+        const result = await callR<ExecuteResult>(
+          "execute",
+          {
+            ...options,
+            target: undefined,
+            input: options.target.input,
+            markdown: resolveInlineExecute(options.target.markdown.value),
+          },
+          options.tempDir,
+          options.project?.isSingleFile ? undefined : options.projectDir,
+          options.quiet,
+          // fixup .rmarkdown file references
+          (output) => {
+            output = output.replaceAll(
+              `${inputStem}.rmarkdown`,
+              () => inputBasename,
+            );
+
+            const m = output.match(/^Quitting from lines (\d+)-(\d+)/m);
+            if (m) {
+              const f1 = quarto.text.lineColToIndex(
+                options.target.markdown.value,
+              );
+              const f2 = mappedIndexToLineCol(options.target.markdown);
+
+              const newLine1 = f2(f1({ line: Number(m[1]) - 1, column: 0 }))
+                .line + 1;
+              const newLine2 = f2(f1({ line: Number(m[2]) - 1, column: 0 }))
+                .line + 1;
+              output = output.replace(
+                /^Quitting from lines (\d+)-(\d+)/m,
+                `\n\nQuitting from lines ${newLine1}-${newLine2}`,
+              );
+            }
 
-  postprocess: async (options: PostProcessOptions) => {
-    // handle preserved html in js-land
-    postProcessRestorePreservedHtml(options);
-
-    // see if we can code link
-    if (options.format.render?.[kCodeLink]) {
-      // When using shiny document, code-link proceesing is not supported
-      // https://github.com/quarto-dev/quarto-cli/issues/9208
-      if (isServerShiny(options.format)) {
-        warning(
-          `'code-link' option will be ignored as it is not supported for 'server: shiny' due to 'downlit' R package limitation (https://github.com/quarto-dev/quarto-cli/issues/9208).`,
-        );
-        return Promise.resolve();
-      }
-      // Current knitr engine postprocess is all about applying downlit processing to the HTML output
-      await callR<void>(
-        "postprocess",
-        {
-          ...options,
-          target: undefined,
-          preserve: undefined,
-          input: options.target.input,
-        },
-        options.tempDir,
-        options.projectDir,
-        options.quiet,
-        undefined,
-        false,
-      ).then(() => {
-        return Promise.resolve();
-      }, () => {
-        warning(
-          `Unable to perform code-link (code-link requires R packages rmarkdown, downlit, and xml2)`,
-        );
-        return Promise.resolve();
-      });
-    }
-  },
+            output = filterAlwaysAllowHtml(output);
 
-  canFreeze: true,
-  generatesFigures: true,
+            return output;
+          },
+        );
+        const includes = result.includes as unknown;
+        // knitr appears to return [] instead of {} as the value for includes.
+        if (Array.isArray(includes) && includes.length === 0) {
+          result.includes = {};
+        }
+        return result;
+      },
 
-  ignoreDirs: () => {
-    return ["renv", "packrat", "rsconnect"];
-  },
+      dependencies: (options: DependenciesOptions) => {
+        return callR<DependenciesResult>(
+          "dependencies",
+          { ...options, target: undefined, input: options.target.input },
+          options.tempDir,
+          options.projectDir,
+          options.quiet,
+        );
+      },
 
-  run: (options: RunOptions) => {
-    let running = false;
-    return callR<void>(
-      "run",
-      options,
-      options.tempDir,
-      options.projectDir,
-      undefined,
-      // wait for 'listening' to call onReady
-      (output) => {
-        const kListeningPattern = /(Listening on) (https?:\/\/[^\n]*)/;
-        if (!running) {
-          const listeningMatch = output.match(kListeningPattern);
-          if (listeningMatch) {
-            running = true;
-            output = output.replace(kListeningPattern, "");
-            if (options.onReady) {
-              options.onReady();
-            }
+      postprocess: async (options: PostProcessOptions) => {
+        // handle preserved html in js-land
+        quarto.text.postProcessRestorePreservedHtml(options);
+
+        // see if we can code link
+        if (options.format.render?.[kCodeLink]) {
+          // When using shiny document, code-link proceesing is not supported
+          // https://github.com/quarto-dev/quarto-cli/issues/9208
+          if (quarto.format.isServerShiny(options.format)) {
+            warning(
+              `'code-link' option will be ignored as it is not supported for 'server: shiny' due to 'downlit' R package limitation (https://github.com/quarto-dev/quarto-cli/issues/9208).`,
+            );
+            return Promise.resolve();
           }
+          // Current knitr engine postprocess is all about applying downlit processing to the HTML output
+          await callR<void>(
+            "postprocess",
+            {
+              ...options,
+              target: undefined,
+              preserve: undefined,
+              input: options.target.input,
+            },
+            options.tempDir,
+            options.projectDir,
+            options.quiet,
+            undefined,
+            false,
+          ).then(() => {
+            return Promise.resolve();
+          }, () => {
+            warning(
+              `Unable to perform code-link (code-link requires R packages rmarkdown, downlit, and xml2)`,
+            );
+            return Promise.resolve();
+          });
         }
-        return output;
       },
-    );
+
+      run: (options: RunOptions) => {
+        let running = false;
+        return callR<void>(
+          "run",
+          options,
+          options.tempDir,
+          options.projectDir,
+          undefined,
+          // wait for 'listening' to call onReady
+          (output) => {
+            const kListeningPattern = /(Listening on) (https?:\/\/[^\n]*)/;
+            if (!running) {
+              const listeningMatch = output.match(kListeningPattern);
+              if (listeningMatch) {
+                running = true;
+                output = output.replace(kListeningPattern, "");
+                if (options.onReady) {
+                  options.onReady();
+                }
+              }
+            }
+            return output;
+          },
+        );
+      },
+    };
   },
 };
 
@@ -284,12 +431,12 @@ async function callR<T>(
   );
 
   try {
-    const result = await execProcess(
+    const result = await quarto.system.execProcess(
       {
         cmd: await rBinaryPath("Rscript"),
         args: [
           ...rscriptArgsArray,
-          resourcePath("rmd/rmd.R"),
+          quarto.path.resource("rmd/rmd.R"),
         ],
         cwd,
         stderr: quiet ? "piped" : "inherit",
@@ -408,7 +555,7 @@ function filterAlwaysAllowHtml(s: string): string {
 }
 
 function resolveInlineExecute(code: string) {
-  return executeInlineCodeHandler(
+  return quarto.text.executeInlineCodeHandler(
     "r",
     (expr) => `${"`"}r .QuartoInlineRender(${expr})${"`"}`,
   )(code);
@@ -433,7 +580,7 @@ export async function markdownFromKnitrSpinScript(file: string) {
   // 2. Second as part of renderProject() call to get `partitioned` information to get `resourcesFrom` with `resourceFilesFromRenderedFile()`
 
   // we need a temp dir for `CallR` to work but we don't have access to usual options.tempDir.
-  const tempDir = globalTempContext().createDir();
+  const tempDir = quarto.system.tempContext().createDir();
 
   const result = await callR<string>(
     "spin",
diff --git a/src/execute/types.ts b/src/execute/types.ts
index 489b378cc80..5d9492c22d1 100644
--- a/src/execute/types.ts
+++ b/src/execute/types.ts
@@ -14,8 +14,12 @@ import { PartitionedMarkdown } from "../core/pandoc/types.ts";
 import { RenderOptions, RenderResultFile } from "../command/render/types.ts";
 import { MappedString } from "../core/lib/text-types.ts";
 import { HandlerContextResults } from "../core/handlers/types.ts";
-import { ProjectContext } from "../project/types.ts";
+import { EngineProjectContext, ProjectContext } from "../project/types.ts";
 import { Command } from "cliffy/command/mod.ts";
+import type { QuartoAPI } from "../core/quarto-api.ts";
+import type { CheckConfiguration } from "../command/check/check.ts";
+
+export type { EngineProjectContext };
 
 export const kQmdExtensions = [".qmd"];
 
@@ -24,7 +28,18 @@ export const kKnitrEngine = "knitr";
 export const kJupyterEngine = "jupyter";
 export const kJuliaEngine = "julia";
 
-export interface ExecutionEngine {
+/**
+ * Interface for the static discovery phase of execution engines
+ * Used to determine which engine should handle a file
+ */
+export interface ExecutionEngineDiscovery {
+  /**
+   * Initialize the engine with the Quarto API (optional)
+   * May be called multiple times but always with the same QuartoAPI object.
+   * Engines should store the reference to use throughout their lifecycle.
+   */
+  init?: (quarto: QuartoAPI) => void;
+
   name: string;
   defaultExt: string;
   defaultYaml: (kernel?: string) => string[];
@@ -32,43 +47,88 @@ export interface ExecutionEngine {
   validExtensions: () => string[];
   claimsFile: (file: string, ext: string) => boolean;
   claimsLanguage: (language: string) => boolean;
+  canFreeze: boolean;
+  generatesFigures: boolean;
+  ignoreDirs?: () => string[] | undefined;
+
+  /**
+   * Semver range specifying the minimum required Quarto version for this engine
+   * Examples: ">= 1.6.0", "^1.5.0", "1.*"
+   */
+  quartoRequired?: string;
+
+  /**
+   * Populate engine-specific CLI commands (optional)
+   */
+  populateCommand?: (command: Command) => void;
+
+  /**
+   * Check installation and capabilities for this engine (optional)
+   * Used by `quarto check <engine-name>` command
+   *
+   * Engines implementing this method will automatically be available as targets
+   * for the check command (e.g., `quarto check jupyter`, `quarto check knitr`).
+   *
+   * @param conf - Check configuration with output settings and services
+   */
+  checkInstallation?: (conf: CheckConfiguration) => Promise<void>;
+
+  /**
+   * Launch a dynamic execution engine with project context
+   */
+  launch: (context: EngineProjectContext) => ExecutionEngineInstance;
+}
+
+/**
+ * Interface for the dynamic execution phase of execution engines
+ * Used after a file has been assigned to an engine
+ */
+export interface ExecutionEngineInstance {
+  name: string;
+  canFreeze: boolean;
+
   markdownForFile(file: string): Promise<MappedString>;
+
   target: (
     file: string,
-    quiet: boolean | undefined,
-    markdown: MappedString | undefined,
-    project: ProjectContext,
+    quiet?: boolean,
+    markdown?: MappedString,
   ) => Promise<ExecutionTarget | undefined>;
+
   partitionedMarkdown: (
     file: string,
     format?: Format,
   ) => Promise<PartitionedMarkdown>;
+
   filterFormat?: (
     source: string,
     options: RenderOptions,
     format: Format,
   ) => Format;
+
   execute: (options: ExecuteOptions) => Promise<ExecuteResult>;
+
   executeTargetSkipped?: (
     target: ExecutionTarget,
     format: Format,
-    project: ProjectContext,
   ) => void;
+
   dependencies: (options: DependenciesOptions) => Promise<DependenciesResult>;
+
   postprocess: (options: PostProcessOptions) => Promise<void>;
-  canFreeze: boolean;
-  generatesFigures: boolean;
+
   canKeepSource?: (target: ExecutionTarget) => boolean;
+
   intermediateFiles?: (input: string) => string[] | undefined;
-  ignoreDirs?: () => string[] | undefined;
+
   run?: (options: RunOptions) => Promise<void>;
+
   postRender?: (
     file: RenderResultFile,
-    project?: ProjectContext,
   ) => Promise<void>;
-  populateCommand?: (command: Command) => void;
 }
 
+
 // execution target (filename and context 'cookie')
 export interface ExecutionTarget {
   source: string;
@@ -151,7 +211,7 @@ export interface DependenciesResult {
 
 // post processing options
 export interface PostProcessOptions {
-  engine: ExecutionEngine;
+  engine: ExecutionEngineInstance;
   target: ExecutionTarget;
   format: Format;
   output: string;
diff --git a/src/extension/extension.ts b/src/extension/extension.ts
index 4a390ad26e3..3437f5303fb 100644
--- a/src/extension/extension.ts
+++ b/src/extension/extension.ts
@@ -56,6 +56,7 @@ import {
   ExtensionOptions,
   RevealPluginInline,
 } from "./types.ts";
+import { ExternalEngine } from "../resources/types/schema-types.ts";
 
 import { cloneDeep } from "../core/lodash.ts";
 import { readAndValidateYamlFromFile } from "../core/schema/validated-yaml.ts";
@@ -276,6 +277,34 @@ export function filterExtensions(
   }
 }
 
+// Read git subtree extensions (pattern 3 only)
+// Looks for top-level directories containing _extensions/ subdirectories
+const readSubtreeExtensions = async (
+  subtreeDir: string,
+): Promise<Extension[]> => {
+  const extensions: Extension[] = [];
+
+  const topLevelDirs = safeExistsSync(subtreeDir) &&
+      Deno.statSync(subtreeDir).isDirectory
+    ? Deno.readDirSync(subtreeDir)
+    : [];
+
+  for (const topLevelDir of topLevelDirs) {
+    if (!topLevelDir.isDirectory) continue;
+
+    const dirPath = join(subtreeDir, topLevelDir.name);
+    const subtreeExtensionsPath = join(dirPath, kExtensionDir);
+
+    if (safeExistsSync(subtreeExtensionsPath)) {
+      // This is a git subtree wrapper - read extensions preserving their natural organization
+      const exts = await readExtensions(subtreeExtensionsPath);
+      extensions.push(...exts);
+    }
+  }
+
+  return extensions;
+};
+
 // Loads all extensions for a given input
 // (note this needs to be sure to return copies from
 // the cache in the event that the objects are mutated)
@@ -286,6 +315,7 @@ const loadExtensions = async (
 ) => {
   const extensionPath = inputExtensionDirs(input, projectDir);
   const allExtensions: Record<string, Extension> = {};
+  const subtreePath = builtinSubtreeExtensions();
 
   for (const extensionDir of extensionPath) {
     if (cache[extensionDir]) {
@@ -293,7 +323,10 @@ const loadExtensions = async (
         allExtensions[extensionIdString(ext.id)] = cloneDeep(ext);
       });
     } else {
-      const extensions = await readExtensions(extensionDir);
+      // Check if this is the subtree extensions directory
+      const extensions = extensionDir === subtreePath
+        ? await readSubtreeExtensions(extensionDir)
+        : await readExtensions(extensionDir);
       extensions.forEach((extension) => {
         allExtensions[extensionIdString(extension.id)] = cloneDeep(extension);
       });
@@ -357,6 +390,8 @@ function findExtensions(
       contributes === kRevealJSPlugins && ext.contributes[kRevealJSPlugins]
     ) {
       return true;
+    } else if (contributes === "engines" && ext.contributes.engines) {
+      return true;
     } else {
       return contributes === undefined;
     }
@@ -517,7 +552,10 @@ export function inputExtensionDirs(input?: string, projectDir?: string) {
   };
 
   // read extensions (start with built-in)
-  const extensionDirectories: string[] = [builtinExtensions()];
+  const extensionDirectories: string[] = [
+    builtinExtensions(),
+    builtinSubtreeExtensions(),
+  ];
   if (projectDir && input) {
     let currentDir = normalizePath(inputDirName(input));
     do {
@@ -622,6 +660,11 @@ function builtinExtensions() {
   return resourcePath("extensions");
 }
 
+// Path for built-in subtree extensions
+function builtinSubtreeExtensions() {
+  return resourcePath("extension-subtrees");
+}
+
 // Validate the extension
 function validateExtension(extension: Extension) {
   let contribCount = 0;
@@ -632,6 +675,7 @@ function validateExtension(extension: Extension) {
     extension.contributes.project,
     extension.contributes[kRevealJSPlugins],
     extension.contributes.metadata,
+    extension.contributes.engines,
   ];
   contribs.forEach((contrib) => {
     if (contrib) {
@@ -837,6 +881,23 @@ async function readExtension(
     return resolveRevealPlugin(extensionDir, plugin);
   });
 
+  // Process engine contributions
+  const engines =
+    ((contributes?.engines || []) as Array<string | ExternalEngine>).map(
+      (engine) => {
+        if (typeof engine === "string") {
+          return engine;
+        } else if (typeof engine === "object" && engine.path) {
+          // Convert relative path to absolute path
+          return {
+            ...engine,
+            path: join(extensionDir, engine.path),
+          };
+        }
+        return engine;
+      },
+    );
+
   // Create the extension data structure
   const result = {
     title,
@@ -852,6 +913,7 @@ async function readExtension(
       formats,
       project: project ?? {},
       [kRevealJSPlugins]: revealJSPlugins,
+      engines: engines.length > 0 ? engines : undefined,
     },
   };
   validateExtension(result);
diff --git a/src/extension/types.ts b/src/extension/types.ts
index 4b8f0cb9e98..6de34af6dfd 100644
--- a/src/extension/types.ts
+++ b/src/extension/types.ts
@@ -9,6 +9,7 @@ import { type Range } from "semver/mod.ts";
 
 import { kSelfContained } from "../config/constants.ts";
 import { Metadata, QuartoFilter } from "../config/types.ts";
+import { ExternalEngine } from "../resources/types/schema-types.ts";
 import {
   RevealPlugin,
   RevealPluginBundle,
@@ -24,7 +25,8 @@ export type Contributes =
   | "formats"
   | "project"
   | "revealjs-plugins"
-  | "metadata";
+  | "metadata"
+  | "engines";
 
 export interface Extension extends Record<string, unknown> {
   id: ExtensionId;
@@ -40,6 +42,7 @@ export interface Extension extends Record<string, unknown> {
     filters?: QuartoFilter[];
     formats?: Record<string, unknown>;
     [kRevealJSPlugins]?: Array<string | RevealPluginBundle | RevealPlugin>;
+    engines?: Array<string | ExternalEngine>;
   };
 }
 
@@ -78,7 +81,8 @@ export interface ExtensionContext {
       | "formats"
       | "project"
       | "revealjs-plugins"
-      | "metadata",
+      | "metadata"
+      | "engines",
     config?: ProjectConfig,
     projectDir?: string,
     options?: ExtensionOptions,
diff --git a/src/project/engine-project-context.ts b/src/project/engine-project-context.ts
new file mode 100644
index 00000000000..eac39404c94
--- /dev/null
+++ b/src/project/engine-project-context.ts
@@ -0,0 +1,76 @@
+/*
+ * engine-project-context.ts
+ *
+ * Copyright (C) 2023 Posit Software, PBC
+ */
+
+import { MappedString } from "../core/mapped-text.ts";
+import { ExecutionEngineInstance } from "../execute/types.ts";
+import { projectOutputDir } from "./project-shared.ts";
+import {
+  EngineProjectContext,
+  FileInformation,
+  ProjectContext,
+} from "./types.ts";
+
+/**
+ * Creates an EngineProjectContext adapter from a ProjectContext
+ * This provides a restricted view of ProjectContext with additional utility methods
+ *
+ * @param context The source ProjectContext
+ * @returns An EngineProjectContext adapter
+ */
+export function engineProjectContext(
+  context: ProjectContext,
+): EngineProjectContext {
+  const project: EngineProjectContext = {
+    // Core properties
+    dir: context.dir,
+    isSingleFile: context.isSingleFile,
+    config: context.config
+      ? {
+        engines: context.config.engines as string[] | undefined,
+        project: context.config.project
+          ? {
+            "output-dir": context.config.project["output-dir"],
+          }
+          : undefined,
+      }
+      : undefined,
+    fileInformationCache: context.fileInformationCache,
+
+    // Path utilities
+    getOutputDirectory: () => {
+      return projectOutputDir(context);
+    },
+
+    // Core methods
+    resolveFullMarkdownForFile: (
+      engine: ExecutionEngineInstance | undefined,
+      file: string,
+      markdown?: MappedString,
+      force?: boolean,
+    ) => context.resolveFullMarkdownForFile(engine, file, markdown, force),
+  };
+
+  return project;
+}
+
+/**
+ * Type guard to check if an object implements the EngineProjectContext interface
+ *
+ * @param obj Object to check
+ * @returns Whether the object is an EngineProjectContext
+ */
+export function isEngineProjectContext(
+  obj: unknown,
+): obj is EngineProjectContext {
+  if (!obj) return false;
+
+  const ctx = obj as Partial<EngineProjectContext>;
+  return (
+    typeof ctx.dir === "string" &&
+    typeof ctx.isSingleFile === "boolean" &&
+    typeof ctx.resolveFullMarkdownForFile === "function"
+  );
+}
diff --git a/src/project/project-context.ts b/src/project/project-context.ts
index 0049122c79d..59ef84b4449 100644
--- a/src/project/project-context.ts
+++ b/src/project/project-context.ts
@@ -64,7 +64,7 @@ import {
   fileExecutionEngineAndTarget,
   projectIgnoreGlobs,
 } from "../execute/engine.ts";
-import { ExecutionEngine, kMarkdownEngine } from "../execute/types.ts";
+import { ExecutionEngineInstance, kMarkdownEngine } from "../execute/types.ts";
 
 import { projectResourceFiles } from "./project-resources.ts";
 
@@ -96,7 +96,6 @@ import { ConcreteSchema } from "../core/lib/yaml-schema/types.ts";
 import { ExtensionContext } from "../extension/types.ts";
 import { asArray } from "../core/array.ts";
 import { renderFormats } from "../command/render/render-contexts.ts";
-import { debug } from "../deno_ral/log.ts";
 import { computeProjectEnvironment } from "./project-environment.ts";
 import { ProjectEnvironment } from "./project-environment-types.ts";
 import { NotebookContext } from "../render/notebook/notebook-types.ts";
@@ -108,8 +107,9 @@ import { createTempContext } from "../core/temp.ts";
 import { onCleanup } from "../core/cleanup.ts";
 import { once } from "../core/once.ts";
 import { Zod } from "../resources/types/zod/schema-types.ts";
+import { ExternalEngine } from "../resources/types/schema-types.ts";
 
-const mergeExtensionMetadata = async (
+export const mergeExtensionMetadata = async (
   context: ProjectContext,
   pOptions: RenderOptions,
 ) => {
@@ -119,9 +119,10 @@ const mergeExtensionMetadata = async (
     const extensions = await pOptions.services.extension.extensions(
       undefined,
       context.config,
-      context.isSingleFile ? undefined : context.dir,
+      context.dir,
       { builtIn: false },
     );
+    // Handle project metadata extensions
     const projectMetadata = extensions.filter((extension) =>
       extension.contributes.metadata?.project
     ).map((extension) => {
@@ -213,6 +214,15 @@ export async function projectContext(
         projectConfig = mergeProjectMetadata(projectConfig, metadata);
       }
 
+      // Process engine extensions
+      if (extensionContext) {
+        projectConfig = await resolveEngineExtensions(
+          extensionContext,
+          projectConfig,
+          dir,
+        );
+      }
+
       // collect then merge configuration profiles
       const result = await initializeProfileConfig(
         dir,
@@ -315,7 +325,7 @@ export async function projectContext(
           resolveBrand: async (fileName?: string) =>
             projectResolveBrand(result, fileName),
           resolveFullMarkdownForFile: (
-            engine: ExecutionEngine | undefined,
+            engine: ExecutionEngineInstance | undefined,
             file: string,
             markdown?: MappedString,
             force?: boolean,
@@ -381,8 +391,6 @@ export async function projectContext(
           return undefined;
         }
 
-        debug(`projectContext: Found Quarto project in ${dir}`);
-
         if (type.formatExtras) {
           result.formatExtras = async (
             source: string,
@@ -400,7 +408,6 @@ export async function projectContext(
         };
         return await returnResult(result);
       } else {
-        debug(`projectContext: Found Quarto project in ${dir}`);
         const temp = createTempContext({
           dir: join(dir, ".quarto"),
           prefix: "quarto-session-temp",
@@ -411,7 +418,7 @@ export async function projectContext(
           resolveBrand: async (fileName?: string) =>
             projectResolveBrand(result, fileName),
           resolveFullMarkdownForFile: (
-            engine: ExecutionEngine | undefined,
+            engine: ExecutionEngineInstance | undefined,
             file: string,
             markdown?: MappedString,
             force?: boolean,
@@ -486,7 +493,7 @@ export async function projectContext(
             resolveBrand: async (fileName?: string) =>
               projectResolveBrand(context, fileName),
             resolveFullMarkdownForFile: (
-              engine: ExecutionEngine | undefined,
+              engine: ExecutionEngineInstance | undefined,
               file: string,
               markdown?: MappedString,
               force?: boolean,
@@ -544,7 +551,6 @@ export async function projectContext(
             context.engines = [engine?.name ?? kMarkdownEngine];
             context.files.input = [input];
           }
-          debug(`projectContext: Found Quarto project in ${originalDir}`);
           return await returnResult(context);
         } else {
           return undefined;
@@ -720,6 +726,64 @@ async function resolveProjectExtension(
   return projectConfig;
 }
 
+export async function resolveEngineExtensions(
+  context: ExtensionContext,
+  projectConfig: ProjectConfig,
+  dir: string,
+) {
+  // First, resolve any relative paths in existing project engines
+  if (projectConfig.engines) {
+    projectConfig.engines =
+      (projectConfig.engines as (string | ExternalEngine)[]).map(
+        (engine) => {
+          if (
+            typeof engine === "object" && engine.path &&
+            !isAbsolute(engine.path)
+          ) {
+            // Convert relative path to absolute path based on project directory
+            return {
+              ...engine,
+              path: join(dir, engine.path),
+            };
+          }
+          return engine;
+        },
+      );
+  }
+
+  // Find all extensions that contribute engines
+  const extensions = await context.extensions(
+    undefined,
+    projectConfig,
+    dir,
+  );
+
+  // Filter to only those with engines
+  const engineExtensions = extensions.filter((extension) =>
+    extension.contributes.engines !== undefined &&
+    extension.contributes.engines.length > 0
+  );
+
+  if (engineExtensions.length > 0) {
+    // Initialize engines array if needed
+    if (!projectConfig.engines) {
+      projectConfig.engines = [];
+    }
+
+    const existingEngines = projectConfig
+      .engines as (string | ExternalEngine)[];
+
+    // Extract and merge engines
+    const extensionEngines = engineExtensions
+      .map((extension) => extension.contributes.engines)
+      .flat();
+
+    projectConfig.engines = [...existingEngines, ...extensionEngines];
+  }
+
+  return projectConfig;
+}
+
 // migrate 'site' to 'website'
 // TODO make this a deprecation warning
 function migrateProjectConfig(projectConfig: ProjectConfig) {
diff --git a/src/project/project-create.ts b/src/project/project-create.ts
index e34867e7731..defec75d5e5 100644
--- a/src/project/project-create.ts
+++ b/src/project/project-create.ts
@@ -19,7 +19,7 @@ import { projectType } from "./types/project-types.ts";
 import { renderEjs } from "../core/ejs.ts";
 
 import { executionEngine } from "../execute/engine.ts";
-import { ExecutionEngine } from "../execute/types.ts";
+import { ExecutionEngineDiscovery } from "../execute/types.ts";
 
 import { projectConfigFile } from "./project-shared.ts";
 import { ensureGitignore } from "./project-gitignore.ts";
@@ -191,7 +191,7 @@ function projectMarkdownFile(
   dir: string,
   name: string,
   content: string,
-  engine: ExecutionEngine,
+  engine: ExecutionEngineDiscovery,
   kernel?: string,
   title?: string,
   noEngineContent?: boolean,
diff --git a/src/project/project-index.ts b/src/project/project-index.ts
index 641c26e3638..195d3282f64 100644
--- a/src/project/project-index.ts
+++ b/src/project/project-index.ts
@@ -7,6 +7,7 @@
 import { dirname, isAbsolute, join, relative } from "../deno_ral/path.ts";
 
 import * as ld from "../core/lodash.ts";
+import { inputTargetIndexCacheMetrics } from "./target-index-cache-metrics.ts";
 
 import {
   InputTarget,
@@ -213,11 +214,6 @@ export function inputTargetIsEmpty(index: InputTargetIndex) {
 }
 
 const inputTargetIndexCache = new Map<string, InputTargetIndex>();
-export const inputTargetIndexCacheMetrics = {
-  hits: 0,
-  misses: 0,
-  invalidations: 0,
-};
 
 function readInputTargetIndexIfStillCurrent(projectDir: string, input: string) {
   const inputFile = join(projectDir, input);
diff --git a/src/project/project-shared.ts b/src/project/project-shared.ts
index c137b5fc970..736e9745f44 100644
--- a/src/project/project-shared.ts
+++ b/src/project/project-shared.ts
@@ -37,7 +37,7 @@ import { MappedString, mappedStringFromFile } from "../core/mapped-text.ts";
 import { createTempContext } from "../core/temp.ts";
 import { RenderContext, RenderFlags } from "../command/render/types.ts";
 import { LanguageCellHandlerOptions } from "../core/handlers/types.ts";
-import { ExecutionEngine } from "../execute/types.ts";
+import { ExecutionEngineInstance } from "../execute/types.ts";
 import { InspectedMdCell } from "../inspect/inspect-types.ts";
 import { breakQuartoMd, QuartoMdCell } from "../core/lib/break-quarto-md.ts";
 import { partitionCellOptionsText } from "../core/lib/partition-cell-options.ts";
@@ -356,7 +356,7 @@ export async function directoryMetadataForInputFile(
 
 const mdForFile = async (
   _project: ProjectContext,
-  engine: ExecutionEngine | undefined,
+  engine: ExecutionEngineInstance | undefined,
   file: string,
 ): Promise<MappedString> => {
   if (engine) {
@@ -369,7 +369,7 @@ const mdForFile = async (
 
 export async function projectResolveCodeCellsForFile(
   project: ProjectContext,
-  engine: ExecutionEngine | undefined,
+  engine: ExecutionEngineInstance | undefined,
   file: string,
   markdown?: MappedString,
   force?: boolean,
@@ -461,7 +461,7 @@ export async function projectFileMetadata(
 
 export async function projectResolveFullMarkdownForFile(
   project: ProjectContext,
-  engine: ExecutionEngine | undefined,
+  engine: ExecutionEngineInstance | undefined,
   file: string,
   markdown?: MappedString,
   force?: boolean,
diff --git a/src/project/target-index-cache-metrics.ts b/src/project/target-index-cache-metrics.ts
new file mode 100644
index 00000000000..d5db1a67ebd
--- /dev/null
+++ b/src/project/target-index-cache-metrics.ts
@@ -0,0 +1,15 @@
+/*
+ * target-index-cache-metrics.ts
+ *
+ * Copyright (C) 2020-2023 Posit Software, PBC
+ */
+
+/**
+ * Performance metrics for the input target index cache
+ * Tracks cache efficiency for optional performance profiling
+ */
+export const inputTargetIndexCacheMetrics = {
+  hits: 0,
+  misses: 0,
+  invalidations: 0,
+};
diff --git a/src/project/types.ts b/src/project/types.ts
index ecf5c60ae83..bce78502f12 100644
--- a/src/project/types.ts
+++ b/src/project/types.ts
@@ -14,7 +14,11 @@ import {
 } from "../core/brand/brand.ts";
 import { MappedString } from "../core/mapped-text.ts";
 import { PartitionedMarkdown } from "../core/pandoc/types.ts";
-import { ExecutionEngine, ExecutionTarget } from "../execute/types.ts";
+import {
+  ExecutionEngineDiscovery,
+  ExecutionEngineInstance,
+  ExecutionTarget,
+} from "../execute/types.ts";
 import { InspectedMdCell } from "../inspect/inspect-types.ts";
 import { NotebookContext } from "../render/notebook/notebook-types.ts";
 import {
@@ -58,7 +62,7 @@ export type FileInformation = {
   fullMarkdown?: MappedString;
   includeMap?: FileInclusion[];
   codeCells?: InspectedMdCell[];
-  engine?: ExecutionEngine;
+  engine?: ExecutionEngineInstance;
   target?: ExecutionTarget;
   metadata?: Metadata;
   brand?: LightDarkBrandDarkFlag;
@@ -87,7 +91,7 @@ export interface ProjectContext extends Cloneable<ProjectContext> {
   // output file is always markdown, though, and it is cached in the project
 
   resolveFullMarkdownForFile: (
-    engine: ExecutionEngine | undefined,
+    engine: ExecutionEngineInstance | undefined,
     file: string,
     markdown?: MappedString,
     force?: boolean,
@@ -96,7 +100,7 @@ export interface ProjectContext extends Cloneable<ProjectContext> {
   fileExecutionEngineAndTarget: (
     file: string,
     force?: boolean,
-  ) => Promise<{ engine: ExecutionEngine; target: ExecutionTarget }>;
+  ) => Promise<{ engine: ExecutionEngineInstance; target: ExecutionTarget }>;
 
   fileMetadata: (
     file: string,
@@ -145,6 +149,64 @@ export const kProject404File = "404.html";
 
 export type LayoutBreak = "" | "sm" | "md" | "lg" | "xl" | "xxl";
 
+/**
+ * A restricted version of ProjectContext that only exposes
+ * functionality needed by execution engines.
+ */
+export interface EngineProjectContext {
+  /**
+   * Base directory of the project
+   */
+  dir: string;
+
+  /**
+   * Flag indicating if project consists of a single file
+   */
+  isSingleFile: boolean;
+
+  /**
+   * Config object containing project configuration
+   * Used primarily for config?.engines access
+   * Can contain arbitrary configuration properties
+   */
+  config?: {
+    engines?: string[];
+    project?: {
+      [kProjectOutputDir]?: string;
+    };
+    [key: string]: unknown;
+  };
+
+  /**
+   * For file information cache management
+   * Used for the transient notebook tracking in Jupyter
+   */
+  fileInformationCache: Map<string, FileInformation>;
+
+  /**
+   * Get the output directory for the project
+   *
+   * @returns Path to output directory
+   */
+  getOutputDirectory: () => string;
+
+  /**
+   * Resolves full markdown content for a file, including expanding includes
+   *
+   * @param engine - The execution engine
+   * @param file - Path to the file
+   * @param markdown - Optional existing markdown content
+   * @param force - Whether to force re-resolution even if cached
+   * @returns Promise resolving to mapped markdown string
+   */
+  resolveFullMarkdownForFile: (
+    engine: ExecutionEngineInstance | undefined,
+    file: string,
+    markdown?: MappedString,
+    force?: boolean,
+  ) => Promise<MappedString>;
+}
+
 export const kAriaLabel = "aria-label";
 export const kCollapseLevel = "collapse-level";
 export const kCollapseBelow = "collapse-below";
diff --git a/src/project/types/single-file/single-file.ts b/src/project/types/single-file/single-file.ts
index 9f4f415f431..aec26a0569a 100644
--- a/src/project/types/single-file/single-file.ts
+++ b/src/project/types/single-file/single-file.ts
@@ -11,12 +11,13 @@
 // single-file path look closer to a project.
 
 import { dirname } from "../../../deno_ral/path.ts";
+import { warning } from "../../../deno_ral/log.ts";
 import { normalizePath } from "../../../core/path.ts";
 import { NotebookContext } from "../../../render/notebook/notebook-types.ts";
 import { makeProjectEnvironmentMemoizer } from "../../project-environment.ts";
 import { ProjectContext } from "../../types.ts";
 import { renderFormats } from "../../../command/render/render-contexts.ts";
-import { RenderFlags } from "../../../command/render/types.ts";
+import { RenderFlags, RenderOptions } from "../../../command/render/types.ts";
 import { MappedString } from "../../../core/mapped-text.ts";
 import { fileExecutionEngineAndTarget } from "../../../execute/engine.ts";
 import {
@@ -26,15 +27,19 @@ import {
   projectResolveBrand,
   projectResolveFullMarkdownForFile,
 } from "../../project-shared.ts";
-import { ExecutionEngine } from "../../../execute/types.ts";
+import { ExecutionEngineInstance } from "../../../execute/types.ts";
 import { createProjectCache } from "../../../core/cache/cache.ts";
 import { globalTempContext } from "../../../core/temp.ts";
 import { once } from "../../../core/once.ts";
+import {
+  mergeExtensionMetadata,
+  resolveEngineExtensions,
+} from "../../project-context.ts";
 
 export async function singleFileProjectContext(
   source: string,
   notebookContext: NotebookContext,
-  flags?: RenderFlags,
+  renderOptions?: RenderOptions,
 ): Promise<ProjectContext> {
   const environmentMemoizer = makeProjectEnvironmentMemoizer(notebookContext);
   const temp = globalTempContext();
@@ -57,12 +62,12 @@ export async function singleFileProjectContext(
     ) => {
       return fileExecutionEngineAndTarget(
         file,
-        flags,
+        renderOptions?.flags,
         result,
       );
     },
     resolveFullMarkdownForFile: (
-      engine: ExecutionEngine | undefined,
+      engine: ExecutionEngineInstance | undefined,
       file: string,
       markdown?: MappedString,
       force?: boolean,
@@ -86,6 +91,37 @@ export async function singleFileProjectContext(
       result.diskCache.close();
     }),
   };
+  if (renderOptions) {
+    result.config = {
+      project: {},
+    };
+    // First resolve engine extensions
+    result.config = await resolveEngineExtensions(
+      renderOptions.services.extension,
+      result.config,
+      result.dir,
+    );
+    // Then merge extension metadata
+    await mergeExtensionMetadata(result, renderOptions);
+
+    // Check if extensions contributed output-dir metadata
+    // If so, set forceClean as if --output-dir specified on command line,
+    // to ensure proper cleanup
+    const outputDir = result.config?.project?.["output-dir"];
+    if (outputDir) {
+      const willForceClean = renderOptions.flags?.clean !== false;
+      warning(
+        `An extension contributed 'output-dir: ${outputDir}' metadata for single-file render.\n` +
+          `Output will go to that directory. The temporary .quarto directory will ${
+            willForceClean
+              ? "be cleaned up"
+              : "NOT be cleaned up (--no-clean specified)"
+          } after rendering.\n` +
+          "To suppress this warning, use --output-dir flag instead of extension metadata.",
+      );
+      renderOptions.forceClean = willForceClean;
+    }
+  }
   // because the single-file project is cleaned up with
   // the global text context, we don't need to register it
   // in the same way that we need to register the multi-file
diff --git a/src/resources/create/extensions/engine/.gitignore b/src/resources/create/extensions/engine/.gitignore
new file mode 100644
index 00000000000..075b2542afb
--- /dev/null
+++ b/src/resources/create/extensions/engine/.gitignore
@@ -0,0 +1 @@
+/.quarto/
diff --git a/src/resources/create/extensions/engine/README.ejs.md b/src/resources/create/extensions/engine/README.ejs.md
new file mode 100644
index 00000000000..10c1efc05a9
--- /dev/null
+++ b/src/resources/create/extensions/engine/README.ejs.md
@@ -0,0 +1,49 @@
+# <%= title %> Extension For Quarto
+
+_TODO_: Add a short description of your extension.
+
+## Installing
+
+_TODO_: Replace the `<github-organization>` with your GitHub organization.
+
+```bash
+quarto add <github-organization>/<%= filesafename %>
+```
+
+This will install the extension under the `_extensions` subdirectory.
+If you're using version control, you will want to check in this directory.
+
+## Developing
+
+This extension is written in TypeScript. The source code is in the `src/` directory.
+
+### Building
+
+To build the extension, you need to set up the build configuration and then run the build command:
+
+```bash
+# Build the TypeScript source to JavaScript
+quarto dev-call build-ts-extension
+```
+
+This will:
+
+- Type-check your TypeScript code against Quarto's API types
+- Bundle the extension into `_extensions/<%= filesafename %>/<%= filesafename %>.js`
+
+The built JavaScript file should be committed to version control along with the source.
+
+Optionally, you can create a deno.json to further customize the build:
+
+```bash
+# First time setup - creates deno.json with import map configuration
+quarto dev-call build-ts-extension --init-config
+```
+
+## Using
+
+_TODO_: Describe how to use your extension.
+
+## Example
+
+Here is the source code for a minimal example: [example.qmd](example.qmd).
diff --git a/src/resources/create/extensions/engine/_extensions/qstart-filesafename-qend/_extension.ejs.yml b/src/resources/create/extensions/engine/_extensions/qstart-filesafename-qend/_extension.ejs.yml
new file mode 100644
index 00000000000..83a13849ffe
--- /dev/null
+++ b/src/resources/create/extensions/engine/_extensions/qstart-filesafename-qend/_extension.ejs.yml
@@ -0,0 +1,7 @@
+title: <%= title %>
+author: <%= author %>
+version: <%= version %>
+quarto-required: ">=<%= quartoversion %>"
+contributes:
+  engines:
+    - path: <%= filesafename %>.js
diff --git a/src/resources/create/extensions/engine/example.ejs.qmd b/src/resources/create/extensions/engine/example.ejs.qmd
new file mode 100644
index 00000000000..102b0ed4336
--- /dev/null
+++ b/src/resources/create/extensions/engine/example.ejs.qmd
@@ -0,0 +1,30 @@
+---
+title: "<%= title %> Example"
+engine: <%= filesafename %>
+---
+
+## Example Content
+
+This demonstrates the `<%= filesafename %>` engine processing cells with the `<%= cellLanguage %>` language.
+
+```{<%= cellLanguage %>}
+# This cell will be processed by the <%= filesafename %> engine
+print("Hello from <%= filesafename %> engine!")
+```
+
+## Other Engines
+
+Currently there can only be one execution engine. 
+So this python code won't execute:
+
+```{python}
+print("Hello from Python!")
+```
+
+## More Example Cells
+
+```{<%= cellLanguage %>}
+# Another example cell
+x = 42
+print(f"The answer is {x}")
+```
diff --git a/src/resources/create/extensions/engine/src/qstart-filesafename-qend.ejs.ts b/src/resources/create/extensions/engine/src/qstart-filesafename-qend.ejs.ts
new file mode 100644
index 00000000000..516124c357d
--- /dev/null
+++ b/src/resources/create/extensions/engine/src/qstart-filesafename-qend.ejs.ts
@@ -0,0 +1,141 @@
+/*
+ * <%= filesafename %>.ts
+ *
+ * Example Quarto engine extension
+ *
+ * This is a minimal example based on the markdown engine.
+ * It demonstrates the basic structure of an execution engine.
+ */
+
+// Type imports from Quarto via import map
+import type {
+  DependenciesOptions,
+  EngineProjectContext,
+  ExecuteOptions,
+  ExecuteResult,
+  ExecutionEngineDiscovery,
+  ExecutionEngineInstance,
+  ExecutionTarget,
+  MappedString,
+  PostProcessOptions,
+  QuartoAPI,
+} from "@quarto/types";
+
+// Module-level quarto API reference
+let quarto: QuartoAPI;
+
+// Engine name constant
+const kEngineName = "<%= filesafename %>";
+const kCellLanguage = "<%= cellLanguage %>";
+
+/**
+ * Example engine implementation with discovery and launch capabilities
+ */
+const exampleEngineDiscovery: ExecutionEngineDiscovery = {
+  init: (quartoAPI: QuartoAPI) => {
+    quarto = quartoAPI;
+  },
+
+  name: kEngineName,
+  defaultExt: ".qmd",
+  defaultYaml: () => [],
+  defaultContent: () => [
+    "```{" + kCellLanguage + "}",
+    "# Example code cell",
+    "print('Hello from <%= filesafename %>!')",
+    "```",
+  ],
+  validExtensions: () => [],
+
+  claimsFile: (_file: string, _ext: string) => {
+    // Return true if this engine should handle the file based on extension
+    return false;
+  },
+
+  claimsLanguage: (language: string) => {
+    // This engine claims cells with its own language name
+    return language.toLowerCase() === kCellLanguage.toLowerCase();
+  },
+
+  canFreeze: false,
+  generatesFigures: false,
+
+  /**
+   * Launch a dynamic execution engine with project context
+   */
+  launch: (context: EngineProjectContext): ExecutionEngineInstance => {
+    return {
+      name: exampleEngineDiscovery.name,
+      canFreeze: exampleEngineDiscovery.canFreeze,
+
+      markdownForFile(file: string): Promise<MappedString> {
+        return Promise.resolve(quarto.mappedString.fromFile(file));
+      },
+
+      target: (file: string, _quiet?: boolean, markdown?: MappedString) => {
+        const md = markdown ?? quarto.mappedString.fromFile(file);
+        const target: ExecutionTarget = {
+          source: file,
+          input: file,
+          markdown: md,
+          metadata: quarto.markdownRegex.extractYaml(md.value),
+        };
+        return Promise.resolve(target);
+      },
+
+      partitionedMarkdown: (file: string) => {
+        return Promise.resolve(
+          quarto.markdownRegex.partition(Deno.readTextFileSync(file)),
+        );
+      },
+
+      execute: async (options: ExecuteOptions): Promise<ExecuteResult> => {
+        // Break markdown into cells to process code blocks individually
+        const chunks = await quarto.markdownRegex.breakQuartoMd(
+          options.target.markdown,
+        );
+
+        // Process each cell
+        const processedCells: string[] = [];
+        for (const cell of chunks.cells) {
+          if (
+            typeof cell.cell_type === "object" &&
+            cell.cell_type.language === kCellLanguage
+          ) {
+            // CHANGE THIS: Add your custom processing here
+            // This example adds the cell language name three times at the start of the cell
+            const processed =
+              [kCellLanguage, kCellLanguage, kCellLanguage].join(" ") +
+              "\n" +
+              cell.source.value;
+            processedCells.push(
+              cell.sourceVerbatim.value.replace(cell.source.value, processed),
+            );
+          } else {
+            // Not our language - pass through unchanged
+            processedCells.push(cell.sourceVerbatim.value);
+          }
+        }
+
+        const processedMarkdown = processedCells.join("");
+
+        return {
+          engine: kEngineName,
+          markdown: processedMarkdown,
+          supporting: [],
+          filters: [],
+        };
+      },
+
+      dependencies: (_options: DependenciesOptions) => {
+        return Promise.resolve({
+          includes: {},
+        });
+      },
+
+      postprocess: (_options: PostProcessOptions) => Promise.resolve(),
+    };
+  },
+};
+
+export default exampleEngineDiscovery;
diff --git a/src/resources/editor/tools/vs-code.mjs b/src/resources/editor/tools/vs-code.mjs
index 71f38043173..3c36d50e791 100644
--- a/src/resources/editor/tools/vs-code.mjs
+++ b/src/resources/editor/tools/vs-code.mjs
@@ -8724,6 +8724,25 @@ var require_yaml_intelligence_resources = __commonJS({
             ]
           }
         },
+        {
+          id: "external-engine",
+          schema: {
+            object: {
+              closed: true,
+              properties: {
+                path: {
+                  path: {
+                    description: "Path to the TypeScript module for the execution engine"
+                  }
+                }
+              },
+              required: [
+                "path"
+              ]
+            },
+            description: "An execution engine not pre-loaded in Quarto"
+          }
+        },
         {
           id: "document-comments-configuration",
           anyOf: [
@@ -20200,6 +20219,16 @@ var require_yaml_intelligence_resources = __commonJS({
                 },
                 formats: {
                   schema: "object"
+                },
+                engines: {
+                  arrayOf: {
+                    anyOf: [
+                      "string",
+                      {
+                        ref: "external-engine"
+                      }
+                    ]
+                  }
                 }
               }
             }
@@ -20638,7 +20667,14 @@ var require_yaml_intelligence_resources = __commonJS({
         {
           name: "engines",
           schema: {
-            arrayOf: "string"
+            arrayOf: {
+              anyOf: [
+                "string",
+                {
+                  ref: "external-engine"
+                }
+              ]
+            }
           },
           description: "List execution engines you want to give priority when determining which engine should render a notebook. If two engines have support for a notebook, the one listed earlier will be chosen. Quarto's default order is 'knitr', 'jupyter', 'markdown', 'julia'."
         }
@@ -22560,6 +22596,10 @@ var require_yaml_intelligence_resources = __commonJS({
         "Specify a default profile and profile groups",
         "Default profile to apply if QUARTO_PROFILE is not defined.",
         "Define a profile group for which at least one profile is always\nactive.",
+        "Control when tests should run",
+        "Run tests on CI (true = run, false = skip)",
+        "Run tests ONLY on these platforms (whitelist)",
+        "Don\u2019t run tests on these platforms (blacklist)",
         "The path to the locally referenced notebook.",
         "The title of the notebook when viewed.",
         "The url to use when viewing this notebook.",
@@ -24808,7 +24848,9 @@ var require_yaml_intelligence_resources = __commonJS({
         "Disambiguating year suffix in author-date styles (e.g.&nbsp;\u201Ca\u201D in \u201CDoe,\n1999a\u201D).",
         "Manuscript configuration",
         "internal-schema-hack",
-        "List execution engines you want to give priority when determining\nwhich engine should render a notebook. If two engines have support for a\nnotebook, the one listed earlier will be chosen. Quarto\u2019s default order\nis \u2018knitr\u2019, \u2018jupyter\u2019, \u2018markdown\u2019, \u2018julia\u2019."
+        "List execution engines you want to give priority when determining\nwhich engine should render a notebook. If two engines have support for a\nnotebook, the one listed earlier will be chosen. Quarto\u2019s default order\nis \u2018knitr\u2019, \u2018jupyter\u2019, \u2018markdown\u2019, \u2018julia\u2019.",
+        "An execution engine not pre-loaded in Quarto",
+        "Path to the TypeScript module for the execution engine"
       ],
       "schema/external-schemas.yml": [
         {
@@ -25037,12 +25079,12 @@ var require_yaml_intelligence_resources = __commonJS({
         mermaid: "%%"
       },
       "handlers/mermaid/schema.yml": {
-        _internalId: 197523,
+        _internalId: 197564,
         type: "object",
         description: "be an object",
         properties: {
           "mermaid-format": {
-            _internalId: 197515,
+            _internalId: 197556,
             type: "enum",
             enum: [
               "png",
@@ -25058,7 +25100,7 @@ var require_yaml_intelligence_resources = __commonJS({
             exhaustiveCompletions: true
           },
           theme: {
-            _internalId: 197522,
+            _internalId: 197563,
             type: "anyOf",
             anyOf: [
               {
diff --git a/src/resources/editor/tools/yaml/all-schema-definitions.json b/src/resources/editor/tools/yaml/all-schema-definitions.json
index e8280e20908..a18ca7d7c8f 100644
--- a/src/resources/editor/tools/yaml/all-schema-definitions.json
+++ b/src/resources/editor/tools/yaml/all-schema-definitions.json
@@ -1 +1 @@
-{"date":{"_internalId":19,"type":"anyOf","anyOf":[{"type":"string","description":"be a string"},{"_internalId":18,"type":"object","description":"be an object","properties":{"value":{"type":"string","description":"be a string"},"format":{"type":"string","description":"be a string"}},"patternProperties":{},"required":["value"]}],"description":"be at least one of: a string, an object","$id":"date"},"date-format":{"type":"string","description":"be a string","$id":"date-format"},"math-methods":{"_internalId":26,"type":"enum","enum":["plain","webtex","gladtex","mathml","mathjax","katex"],"description":"be one of: `plain`, `webtex`, `gladtex`, `mathml`, `mathjax`, `katex`","completions":["plain","webtex","gladtex","mathml","mathjax","katex"],"exhaustiveCompletions":true,"$id":"math-methods"},"pandoc-format-request-headers":{"_internalId":34,"type":"array","description":"be an array of values, where each element must be an array of values, where each element must be a string","items":{"_internalId":33,"type":"array","description":"be an array of values, where each element must be a string","items":{"type":"string","description":"be a string"}},"$id":"pandoc-format-request-headers"},"pandoc-format-output-file":{"_internalId":42,"type":"anyOf","anyOf":[{"type":"string","description":"be a string"},{"_internalId":41,"type":"enum","enum":[null],"description":"be 'null'","completions":[],"exhaustiveCompletions":true,"tags":{"hidden":true}}],"description":"be at least one of: a string, 'null'","$id":"pandoc-format-output-file"},"pandoc-format-filters":{"_internalId":73,"type":"array","description":"be an array of values, where each element must be at least one of: a string, an object, an object, an object","items":{"_internalId":72,"type":"anyOf","anyOf":[{"type":"string","description":"be a string"},{"_internalId":55,"type":"object","description":"be an object","properties":{"type":{"type":"string","description":"be a string"},"path":{"type":"string","description":"be a string"}},"patternProperties":{},"required":["path"]},{"_internalId":65,"type":"object","description":"be an object","properties":{"type":{"type":"string","description":"be a string"},"path":{"type":"string","description":"be a string"},"at":{"_internalId":64,"type":"enum","enum":["pre-ast","post-ast","pre-quarto","post-quarto","pre-render","post-render"],"description":"be one of: `pre-ast`, `post-ast`, `pre-quarto`, `post-quarto`, `pre-render`, `post-render`","completions":["pre-ast","post-ast","pre-quarto","post-quarto","pre-render","post-render"],"exhaustiveCompletions":true}},"patternProperties":{},"required":["path","at"]},{"_internalId":71,"type":"object","description":"be an object","properties":{"type":{"_internalId":70,"type":"enum","enum":["citeproc"],"description":"be 'citeproc'","completions":["citeproc"],"exhaustiveCompletions":true}},"patternProperties":{},"required":["type"],"closed":true}],"description":"be at least one of: a string, an object, an object, an object"},"$id":"pandoc-format-filters"},"pandoc-shortcodes":{"_internalId":78,"type":"array","description":"be an array of values, where each element must be a string","items":{"type":"string","description":"be a string"},"$id":"pandoc-shortcodes"},"page-column":{"_internalId":81,"type":"enum","enum":["body","body-outset","body-outset-left","body-outset-right","page","page-left","page-right","page-inset","page-inset-left","page-inset-right","screen","screen-left","screen-right","screen-inset","screen-inset-shaded","screen-inset-left","screen-inset-right","margin"],"description":"be one of: `body`, `body-outset`, `body-outset-left`, `body-outset-right`, `page`, `page-left`, `page-right`, `page-inset`, `page-inset-left`, `page-inset-right`, `screen`, `screen-left`, `screen-right`, `screen-inset`, `screen-inset-shaded`, `screen-inset-left`, `screen-inset-right`, `margin`","completions":["body","body-outset","body-outset-left","body-outset-right","page","page-left","page-right","page-inset","page-inset-left","page-inset-right","screen","screen-left","screen-right","screen-inset","screen-inset-shaded","screen-inset-left","screen-inset-right","margin"],"exhaustiveCompletions":true,"$id":"page-column"},"contents-auto":{"_internalId":95,"type":"object","description":"be an object","properties":{"auto":{"_internalId":94,"type":"anyOf","anyOf":[{"type":"boolean","description":"be `true` or `false`","completions":["true","false"],"exhaustiveCompletions":true},{"_internalId":93,"type":"anyOf","anyOf":[{"type":"string","description":"be a string"},{"_internalId":92,"type":"array","description":"be an array of values, where each element must be a string","items":{"type":"string","description":"be a string"}}],"description":"be at least one of: a string, an array of values, where each element must be a string","tags":{"complete-from":["anyOf",0]}}],"description":"be at least one of: `true` or `false`, at least one of: a string, an array of values, where each element must be a string","tags":{"description":{"short":"Automatically generate sidebar contents.","long":"Automatically generate sidebar contents. Pass `true` to include all documents\nin the site, a directory name to include only documents in that directory, \nor a glob (or list of globs) to include documents based on a pattern. \n\nSubdirectories will create sections (use an `index.qmd` in the directory to\nprovide its title). Order will be alphabetical unless a numeric `order` field\nis provided in document metadata.\n"}},"documentation":"Automatically generate sidebar contents."}},"patternProperties":{},"$id":"contents-auto"},"navigation-item":{"_internalId":103,"type":"anyOf","anyOf":[{"type":"string","description":"be a string"},{"_internalId":102,"type":"ref","$ref":"navigation-item-object","description":"be navigation-item-object"}],"description":"be at least one of: a string, navigation-item-object","$id":"navigation-item"},"navigation-item-object":{"_internalId":132,"type":"object","description":"be an object","properties":{"aria-label":{"type":"string","description":"be a string","tags":{"description":"Accessible label for the item."},"documentation":"Accessible label for the item."},"file":{"type":"string","description":"be a string","tags":{"description":"Alias for href\n","hidden":true},"documentation":"Alias for href","completions":[]},"href":{"type":"string","description":"be a string","tags":{"description":"Link to file contained with the project or external URL\n"},"documentation":"Link to file contained with the project or external URL"},"icon":{"type":"string","description":"be a string","tags":{"description":{"short":"Name of bootstrap icon (e.g. `github`, `bluesky`, `share`)","long":"Name of bootstrap icon (e.g. `github`, `bluesky`, `share`)\nSee <https://icons.getbootstrap.com/> for a list of available icons\n"}},"documentation":"Name of bootstrap icon (e.g.&nbsp;<code>github</code>,\n<code>twitter</code>, <code>share</code>)"},"id":{"type":"string","description":"be a string","completions":[],"tags":{"hidden":true}},"menu":{"_internalId":123,"type":"array","description":"be an array of values, where each element must be navigation-item","items":{"_internalId":122,"type":"ref","$ref":"navigation-item","description":"be navigation-item"}},"text":{"type":"string","description":"be a string","tags":{"description":"Text to display for item (defaults to the\ndocument title if not provided)\n"},"documentation":"Text to display for item (defaults to the document title if not\nprovided)"},"url":{"type":"string","description":"be a string","tags":{"description":"Alias for href\n","hidden":true},"documentation":"Alias for href","completions":[]},"rel":{"type":"string","description":"be a string","tags":{"description":"Value for rel attribute. Multiple space-separated values are permitted.\nSee <https://developer.mozilla.org/en-US/docs/Web/HTML/Attributes/rel>\nfor a details.\n"},"documentation":"Value for rel attribute. Multiple space-separated values are\npermitted. See <a href=\"https://developer.mozilla.org/en-US/docs/Web/HTML/Attributes/rel\" class=\"uri\">https://developer.mozilla.org/en-US/docs/Web/HTML/Attributes/rel</a>\nfor a details."},"target":{"type":"string","description":"be a string","tags":{"description":"Value for target attribute.\nSee <https://developer.mozilla.org/en-US/docs/Web/HTML/Element/a#attr-target>\nfor details.\n"},"documentation":"Value for target attribute. See <a href=\"https://developer.mozilla.org/en-US/docs/Web/HTML/Element/a#attr-target\" class=\"uri\">https://developer.mozilla.org/en-US/docs/Web/HTML/Element/a#attr-target</a>\nfor details."}},"patternProperties":{},"closed":true,"$id":"navigation-item-object"},"giscus-themes":{"_internalId":135,"type":"enum","enum":["light","light_high_contrast","light_protanopia","light_tritanopia","dark","dark_high_contrast","dark_protanopia","dark_tritanopia","dark_dimmed","transparent_dark","cobalt","purple_dark","noborder_light","noborder_dark","noborder_gray","preferred_color_scheme"],"description":"be one of: `light`, `light_high_contrast`, `light_protanopia`, `light_tritanopia`, `dark`, `dark_high_contrast`, `dark_protanopia`, `dark_tritanopia`, `dark_dimmed`, `transparent_dark`, `cobalt`, `purple_dark`, `noborder_light`, `noborder_dark`, `noborder_gray`, `preferred_color_scheme`","completions":["light","light_high_contrast","light_protanopia","light_tritanopia","dark","dark_high_contrast","dark_protanopia","dark_tritanopia","dark_dimmed","transparent_dark","cobalt","purple_dark","noborder_light","noborder_dark","noborder_gray","preferred_color_scheme"],"exhaustiveCompletions":true,"$id":"giscus-themes"},"giscus-configuration":{"_internalId":192,"type":"object","description":"be an object","properties":{"repo":{"type":"string","description":"be a string","tags":{"description":{"short":"The Github repo that will be used to store comments.","long":"The Github repo that will be used to store comments.\n\nIn order to work correctly, the repo must be public, with the giscus app installed, and \nthe discussions feature must be enabled.\n"}},"documentation":"The Github repo that will be used to store comments."},"repo-id":{"type":"string","description":"be a string","tags":{"description":{"short":"The Github repository identifier.","long":"The Github repository identifier.\n\nYou can quickly find this by using the configuration tool at [https://giscus.app](https://giscus.app).\nIf this is not provided, Quarto will attempt to discover it at render time.\n"}},"documentation":"The Github repository identifier."},"category":{"type":"string","description":"be a string","tags":{"description":{"short":"The discussion category where new discussions will be created.","long":"The discussion category where new discussions will be created. It is recommended \nto use a category with the **Announcements** type so that new discussions \ncan only be created by maintainers and giscus.\n"}},"documentation":"The discussion category where new discussions will be created."},"category-id":{"type":"string","description":"be a string","tags":{"description":{"short":"The Github category identifier.","long":"The Github category identifier.\n\nYou can quickly find this by using the configuration tool at [https://giscus.app](https://giscus.app).\nIf this is not provided, Quarto will attempt to discover it at render time.\n"}},"documentation":"The Github category identifier."},"mapping":{"_internalId":154,"type":"anyOf","anyOf":[{"type":"string","description":"be a string"},{"type":"number","description":"be a number"}],"description":"be at least one of: a string, a number","completions":["pathname","url","title","og:title"],"tags":{"description":{"short":"The mapping between the page and the embedded discussion.","long":"The mapping between the page and the embedded discussion. \n\n- `pathname`: The discussion title contains the page path\n- `url`: The discussion title contains the page url\n- `title`: The discussion title contains the page title\n- `og:title`: The discussion title contains the `og:title` metadata value\n- any other string or number: Any other strings will be passed through verbatim and a discussion title\ncontaining that value will be used. 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\ No newline at end of file
diff --git a/src/resources/editor/tools/yaml/web-worker.js b/src/resources/editor/tools/yaml/web-worker.js
index d04267a8287..f305eba8877 100644
--- a/src/resources/editor/tools/yaml/web-worker.js
+++ b/src/resources/editor/tools/yaml/web-worker.js
@@ -8725,6 +8725,25 @@ try {
               ]
             }
           },
+          {
+            id: "external-engine",
+            schema: {
+              object: {
+                closed: true,
+                properties: {
+                  path: {
+                    path: {
+                      description: "Path to the TypeScript module for the execution engine"
+                    }
+                  }
+                },
+                required: [
+                  "path"
+                ]
+              },
+              description: "An execution engine not pre-loaded in Quarto"
+            }
+          },
           {
             id: "document-comments-configuration",
             anyOf: [
@@ -20201,6 +20220,16 @@ try {
                   },
                   formats: {
                     schema: "object"
+                  },
+                  engines: {
+                    arrayOf: {
+                      anyOf: [
+                        "string",
+                        {
+                          ref: "external-engine"
+                        }
+                      ]
+                    }
                   }
                 }
               }
@@ -20639,7 +20668,14 @@ try {
           {
             name: "engines",
             schema: {
-              arrayOf: "string"
+              arrayOf: {
+                anyOf: [
+                  "string",
+                  {
+                    ref: "external-engine"
+                  }
+                ]
+              }
             },
             description: "List execution engines you want to give priority when determining which engine should render a notebook. If two engines have support for a notebook, the one listed earlier will be chosen. Quarto's default order is 'knitr', 'jupyter', 'markdown', 'julia'."
           }
@@ -22561,6 +22597,10 @@ try {
           "Specify a default profile and profile groups",
           "Default profile to apply if QUARTO_PROFILE is not defined.",
           "Define a profile group for which at least one profile is always\nactive.",
+          "Control when tests should run",
+          "Run tests on CI (true = run, false = skip)",
+          "Run tests ONLY on these platforms (whitelist)",
+          "Don\u2019t run tests on these platforms (blacklist)",
           "The path to the locally referenced notebook.",
           "The title of the notebook when viewed.",
           "The url to use when viewing this notebook.",
@@ -24809,7 +24849,9 @@ try {
           "Disambiguating year suffix in author-date styles (e.g.&nbsp;\u201Ca\u201D in \u201CDoe,\n1999a\u201D).",
           "Manuscript configuration",
           "internal-schema-hack",
-          "List execution engines you want to give priority when determining\nwhich engine should render a notebook. If two engines have support for a\nnotebook, the one listed earlier will be chosen. Quarto\u2019s default order\nis \u2018knitr\u2019, \u2018jupyter\u2019, \u2018markdown\u2019, \u2018julia\u2019."
+          "List execution engines you want to give priority when determining\nwhich engine should render a notebook. If two engines have support for a\nnotebook, the one listed earlier will be chosen. Quarto\u2019s default order\nis \u2018knitr\u2019, \u2018jupyter\u2019, \u2018markdown\u2019, \u2018julia\u2019.",
+          "An execution engine not pre-loaded in Quarto",
+          "Path to the TypeScript module for the execution engine"
         ],
         "schema/external-schemas.yml": [
           {
@@ -25038,12 +25080,12 @@ try {
           mermaid: "%%"
         },
         "handlers/mermaid/schema.yml": {
-          _internalId: 197523,
+          _internalId: 197564,
           type: "object",
           description: "be an object",
           properties: {
             "mermaid-format": {
-              _internalId: 197515,
+              _internalId: 197556,
               type: "enum",
               enum: [
                 "png",
@@ -25059,7 +25101,7 @@ try {
               exhaustiveCompletions: true
             },
             theme: {
-              _internalId: 197522,
+              _internalId: 197563,
               type: "anyOf",
               anyOf: [
                 {
diff --git a/src/resources/editor/tools/yaml/yaml-intelligence-resources.json b/src/resources/editor/tools/yaml/yaml-intelligence-resources.json
index 344806ac739..a6711811c9d 100644
--- a/src/resources/editor/tools/yaml/yaml-intelligence-resources.json
+++ b/src/resources/editor/tools/yaml/yaml-intelligence-resources.json
@@ -1696,6 +1696,25 @@
         ]
       }
     },
+    {
+      "id": "external-engine",
+      "schema": {
+        "object": {
+          "closed": true,
+          "properties": {
+            "path": {
+              "path": {
+                "description": "Path to the TypeScript module for the execution engine"
+              }
+            }
+          },
+          "required": [
+            "path"
+          ]
+        },
+        "description": "An execution engine not pre-loaded in Quarto"
+      }
+    },
     {
       "id": "document-comments-configuration",
       "anyOf": [
@@ -13172,6 +13191,16 @@
             },
             "formats": {
               "schema": "object"
+            },
+            "engines": {
+              "arrayOf": {
+                "anyOf": [
+                  "string",
+                  {
+                    "ref": "external-engine"
+                  }
+                ]
+              }
             }
           }
         }
@@ -13610,7 +13639,14 @@
     {
       "name": "engines",
       "schema": {
-        "arrayOf": "string"
+        "arrayOf": {
+          "anyOf": [
+            "string",
+            {
+              "ref": "external-engine"
+            }
+          ]
+        }
       },
       "description": "List execution engines you want to give priority when determining which engine should render a notebook. If two engines have support for a notebook, the one listed earlier will be chosen. Quarto's default order is 'knitr', 'jupyter', 'markdown', 'julia'."
     }
@@ -15532,6 +15568,10 @@
     "Specify a default profile and profile groups",
     "Default profile to apply if QUARTO_PROFILE is not defined.",
     "Define a profile group for which at least one profile is always\nactive.",
+    "Control when tests should run",
+    "Run tests on CI (true = run, false = skip)",
+    "Run tests ONLY on these platforms (whitelist)",
+    "Don’t run tests on these platforms (blacklist)",
     "The path to the locally referenced notebook.",
     "The title of the notebook when viewed.",
     "The url to use when viewing this notebook.",
@@ -17780,7 +17820,9 @@
     "Disambiguating year suffix in author-date styles (e.g.&nbsp;“a” in “Doe,\n1999a”).",
     "Manuscript configuration",
     "internal-schema-hack",
-    "List execution engines you want to give priority when determining\nwhich engine should render a notebook. If two engines have support for a\nnotebook, the one listed earlier will be chosen. Quarto’s default order\nis ‘knitr’, ‘jupyter’, ‘markdown’, ‘julia’."
+    "List execution engines you want to give priority when determining\nwhich engine should render a notebook. If two engines have support for a\nnotebook, the one listed earlier will be chosen. Quarto’s default order\nis ‘knitr’, ‘jupyter’, ‘markdown’, ‘julia’.",
+    "An execution engine not pre-loaded in Quarto",
+    "Path to the TypeScript module for the execution engine"
   ],
   "schema/external-schemas.yml": [
     {
@@ -18009,12 +18051,12 @@
     "mermaid": "%%"
   },
   "handlers/mermaid/schema.yml": {
-    "_internalId": 197523,
+    "_internalId": 197564,
     "type": "object",
     "description": "be an object",
     "properties": {
       "mermaid-format": {
-        "_internalId": 197515,
+        "_internalId": 197556,
         "type": "enum",
         "enum": [
           "png",
@@ -18030,7 +18072,7 @@
         "exhaustiveCompletions": true
       },
       "theme": {
-        "_internalId": 197522,
+        "_internalId": 197563,
         "type": "anyOf",
         "anyOf": [
           {
diff --git a/src/resources/extension-build/README.md b/src/resources/extension-build/README.md
new file mode 100644
index 00000000000..86ff288fc00
--- /dev/null
+++ b/src/resources/extension-build/README.md
@@ -0,0 +1,27 @@
+# Extension Build Resources
+
+This directory contains default configuration files for TypeScript execution engine extensions.
+
+## Files
+
+- **deno.json** - Default TypeScript compiler configuration
+- **import-map.json** - Import mappings for @quarto/types and Deno standard library
+- **quarto-types.d.ts** - Type definitions (copied from packages/quarto-types/dist/ during packaging)
+
+## Usage
+
+These files are used by `quarto dev-call build-ts-extension` when a user project doesn't have its own `deno.json`.
+
+**Dev mode:** Accessed via `resourcePath("extension-build/")`
+- `import-map.json` points to `../../../packages/quarto-types/dist/index.d.ts`
+- This relative path works from `src/resources/extension-build/`
+
+**Distribution mode:** Copied to `share/extension-build/` during packaging
+- `import-map.json` is transformed by `updateImportMap()` in prepare-dist.ts
+- `@quarto/types` path changed to `./quarto-types.d.ts`
+- Deno std versions updated from `src/import_map.json`
+
+## Updating Versions
+
+Deno std library versions are automatically synced from `src/import_map.json` during packaging.
+No manual updates needed to this directory's import-map.json versions.
diff --git a/src/resources/extension-build/deno.json b/src/resources/extension-build/deno.json
new file mode 100644
index 00000000000..f590ca177b8
--- /dev/null
+++ b/src/resources/extension-build/deno.json
@@ -0,0 +1,7 @@
+{
+  "compilerOptions": {
+    "strict": true,
+    "lib": ["deno.ns", "DOM", "ES2021"]
+  },
+  "importMap": "./import-map.json"
+}
diff --git a/src/resources/extension-build/import-map.json b/src/resources/extension-build/import-map.json
new file mode 100644
index 00000000000..56b6312f6a6
--- /dev/null
+++ b/src/resources/extension-build/import-map.json
@@ -0,0 +1,11 @@
+{
+  "imports": {
+    "@quarto/types": "../../../packages/quarto-types/dist/index.d.ts",
+    "path": "jsr:@std/path@1.0.8",
+    "path/posix": "jsr:@std/path@1.0.8/posix",
+    "log": "jsr:/@std/log@0.224.0",
+    "log/": "jsr:/@std/log@0.224.0/",
+    "fs/": "jsr:/@std/fs@1.0.16/",
+    "encoding/": "jsr:/@std/encoding@1.0.9/"
+  }
+}
diff --git a/src/resources/extension-subtrees/julia-engine/.gitignore b/src/resources/extension-subtrees/julia-engine/.gitignore
new file mode 100644
index 00000000000..844b2d77f92
--- /dev/null
+++ b/src/resources/extension-subtrees/julia-engine/.gitignore
@@ -0,0 +1,6 @@
+example.html
+example_files/
+.quarto/
+
+/.quarto/
+**/*.quarto_ipynb
diff --git a/src/resources/extension-subtrees/julia-engine/Manifest.toml b/src/resources/extension-subtrees/julia-engine/Manifest.toml
new file mode 100644
index 00000000000..a7afb0a8f1e
--- /dev/null
+++ b/src/resources/extension-subtrees/julia-engine/Manifest.toml
@@ -0,0 +1,1571 @@
+# This file is machine-generated - editing it directly is not advised
+
+julia_version = "1.12.1"
+manifest_format = "2.0"
+project_hash = "8551d9d97d1c74b8788a9cb955d4fe3906e3f1e7"
+
+[[deps.AbstractFFTs]]
+deps = ["LinearAlgebra"]
+git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef"
+uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c"
+version = "1.5.0"
+weakdeps = ["ChainRulesCore", "Test"]
+
+    [deps.AbstractFFTs.extensions]
+    AbstractFFTsChainRulesCoreExt = "ChainRulesCore"
+    AbstractFFTsTestExt = "Test"
+
+[[deps.Adapt]]
+deps = ["LinearAlgebra", "Requires"]
+git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0"
+uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
+version = "4.4.0"
+weakdeps = ["SparseArrays", "StaticArrays"]
+
+    [deps.Adapt.extensions]
+    AdaptSparseArraysExt = "SparseArrays"
+    AdaptStaticArraysExt = "StaticArrays"
+
+[[deps.AliasTables]]
+deps = ["PtrArrays", "Random"]
+git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff"
+uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8"
+version = "1.1.3"
+
+[[deps.ArgTools]]
+uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
+version = "1.1.2"
+
+[[deps.Arpack]]
+deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"]
+git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436"
+uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97"
+version = "0.5.4"
+
+[[deps.Arpack_jll]]
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"]
+git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e"
+uuid = "68821587-b530-5797-8361-c406ea357684"
+version = "3.5.1+1"
+
+[[deps.Artifacts]]
+uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
+version = "1.11.0"
+
+[[deps.AxisAlgorithms]]
+deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"]
+git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712"
+uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950"
+version = "1.1.0"
+
+[[deps.Base64]]
+uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
+version = "1.11.0"
+
+[[deps.BitFlags]]
+git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d"
+uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35"
+version = "0.1.9"
+
+[[deps.Bzip2_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e"
+uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0"
+version = "1.0.9+0"
+
+[[deps.CSV]]
+deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"]
+git-tree-sha1 = "deddd8725e5e1cc49ee205a1964256043720a6c3"
+uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
+version = "0.10.15"
+
+[[deps.Cairo_jll]]
+deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"]
+git-tree-sha1 = "fde3bf89aead2e723284a8ff9cdf5b551ed700e8"
+uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a"
+version = "1.18.5+0"
+
+[[deps.CategoricalArrays]]
+deps = ["DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"]
+git-tree-sha1 = "5084cc1a28976dd1642c9f337b28a3cb03e0f7d2"
+uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597"
+version = "0.10.7"
+
+[[deps.ChainRulesCore]]
+deps = ["Compat", "LinearAlgebra"]
+git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607"
+uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
+version = "1.26.0"
+weakdeps = ["SparseArrays"]
+
+    [deps.ChainRulesCore.extensions]
+    ChainRulesCoreSparseArraysExt = "SparseArrays"
+
+[[deps.Clustering]]
+deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"]
+git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94"
+uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5"
+version = "0.15.8"
+
+[[deps.CodecZlib]]
+deps = ["TranscodingStreams", "Zlib_jll"]
+git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9"
+uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
+version = "0.7.8"
+
+[[deps.ColorSchemes]]
+deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
+git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34"
+uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4"
+version = "3.31.0"
+
+[[deps.ColorTypes]]
+deps = ["FixedPointNumbers", "Random"]
+git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe"
+uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f"
+version = "0.12.1"
+weakdeps = ["StyledStrings"]
+
+    [deps.ColorTypes.extensions]
+    StyledStringsExt = "StyledStrings"
+
+[[deps.ColorVectorSpace]]
+deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"]
+git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1"
+uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4"
+version = "0.11.0"
+weakdeps = ["SpecialFunctions"]
+
+    [deps.ColorVectorSpace.extensions]
+    SpecialFunctionsExt = "SpecialFunctions"
+
+[[deps.Colors]]
+deps = ["ColorTypes", "FixedPointNumbers", "Reexport"]
+git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74"
+uuid = "5ae59095-9a9b-59fe-a467-6f913c188581"
+version = "0.13.1"
+
+[[deps.Compat]]
+deps = ["TOML", "UUIDs"]
+git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad"
+uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
+version = "4.18.1"
+weakdeps = ["Dates", "LinearAlgebra"]
+
+    [deps.Compat.extensions]
+    CompatLinearAlgebraExt = "LinearAlgebra"
+
+[[deps.CompilerSupportLibraries_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
+version = "1.3.0+1"
+
+[[deps.ConcurrentUtilities]]
+deps = ["Serialization", "Sockets"]
+git-tree-sha1 = "d9d26935a0bcffc87d2613ce14c527c99fc543fd"
+uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
+version = "2.5.0"
+
+[[deps.Contour]]
+git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8"
+uuid = "d38c429a-6771-53c6-b99e-75d170b6e991"
+version = "0.6.3"
+
+[[deps.Crayons]]
+git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15"
+uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
+version = "4.1.1"
+
+[[deps.DataAPI]]
+git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe"
+uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
+version = "1.16.0"
+
+[[deps.DataFrames]]
+deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
+git-tree-sha1 = "d8928e9169ff76c6281f39a659f9bca3a573f24c"
+uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
+version = "1.8.1"
+
+[[deps.DataStructures]]
+deps = ["OrderedCollections"]
+git-tree-sha1 = "6c72198e6a101cccdd4c9731d3985e904ba26037"
+uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
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+
+[[deps.DataValueInterfaces]]
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+
+[[deps.Dates]]
+deps = ["Printf"]
+uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
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+
+[[deps.Dbus_jll]]
+deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd"
+uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab"
+version = "1.16.2+0"
+
+[[deps.DelimitedFiles]]
+deps = ["Mmap"]
+git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae"
+uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"
+version = "1.9.1"
+
+[[deps.Distances]]
+deps = ["LinearAlgebra", "Statistics", "StatsAPI"]
+git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d"
+uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
+version = "0.10.12"
+weakdeps = ["ChainRulesCore", "SparseArrays"]
+
+    [deps.Distances.extensions]
+    DistancesChainRulesCoreExt = "ChainRulesCore"
+    DistancesSparseArraysExt = "SparseArrays"
+
+[[deps.Distributed]]
+deps = ["Random", "Serialization", "Sockets"]
+uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
+version = "1.11.0"
+
+[[deps.Distributions]]
+deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"]
+git-tree-sha1 = "3bc002af51045ca3b47d2e1787d6ce02e68b943a"
+uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
+version = "0.25.122"
+
+    [deps.Distributions.extensions]
+    DistributionsChainRulesCoreExt = "ChainRulesCore"
+    DistributionsDensityInterfaceExt = "DensityInterface"
+    DistributionsTestExt = "Test"
+
+    [deps.Distributions.weakdeps]
+    ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
+    DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d"
+    Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[[deps.DocStringExtensions]]
+git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c"
+uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
+version = "0.9.5"
+
+[[deps.Downloads]]
+deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
+uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
+version = "1.6.0"
+
+[[deps.EpollShim_jll]]
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+
+[[deps.ExceptionUnwrapping]]
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+
+[[deps.Expat_jll]]
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+uuid = "2e619515-83b5-522b-bb60-26c02a35a201"
+version = "2.7.3+0"
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+git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499"
+uuid = "36db933b-70db-51c0-b978-0f229ee0e533"
+version = "1.28.1+0"
+
+[[deps.libpng_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
+git-tree-sha1 = "07b6a107d926093898e82b3b1db657ebe33134ec"
+uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
+version = "1.6.50+0"
+
+[[deps.libvorbis_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"]
+git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5"
+uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a"
+version = "1.3.8+0"
+
+[[deps.mtdev_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1"
+uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e"
+version = "1.1.7+0"
+
+[[deps.nghttp2_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
+version = "1.64.0+1"
+
+[[deps.oneTBB_jll]]
+deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"]
+git-tree-sha1 = "1350188a69a6e46f799d3945beef36435ed7262f"
+uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e"
+version = "2022.0.0+1"
+
+[[deps.p7zip_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
+version = "17.5.0+2"
+
+[[deps.x264_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7"
+uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a"
+version = "10164.0.1+0"
+
+[[deps.x265_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3"
+uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76"
+version = "4.1.0+0"
+
+[[deps.xkbcommon_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"]
+git-tree-sha1 = "fbf139bce07a534df0e699dbb5f5cc9346f95cc1"
+uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd"
+version = "1.9.2+0"
diff --git a/src/resources/extension-subtrees/julia-engine/Project.toml b/src/resources/extension-subtrees/julia-engine/Project.toml
new file mode 100644
index 00000000000..f7efb7ebea7
--- /dev/null
+++ b/src/resources/extension-subtrees/julia-engine/Project.toml
@@ -0,0 +1,4 @@
+[deps]
+Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
+RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b"
+StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd"
diff --git a/src/resources/extension-subtrees/julia-engine/README.md b/src/resources/extension-subtrees/julia-engine/README.md
new file mode 100644
index 00000000000..c443f447251
--- /dev/null
+++ b/src/resources/extension-subtrees/julia-engine/README.md
@@ -0,0 +1,31 @@
+# engine extension for julia in quarto
+
+Quarto will introduce engine extensions in 1.9, and this is an experimental port of Quarto's Julia engine to the new architecture.
+
+Install it with
+
+```
+quarto add gordonwoodhull/quarto-julia-engine
+```
+
+You'll need the `feature/engine-extension` branch of Quarto, until it's merged.
+
+## Development
+
+To build the TypeScript engine extension:
+
+```bash
+quarto call build-ts-extension
+```
+
+This bundles `src/julia-engine.ts` into `_extensions/julia-engine/julia-engine.js`.
+
+## Implementation notes
+
+A few system utilities are replaced with small Deno wrappers at the top of `src/julia-engine.ts`. Deno has a better `delay` but it's not in Quarto's export map currently; it also uses `setTimeout()`.
+
+There is a new Quarto API for the more significant utilities, such as Jupyter and Markdown functions. Quarto passes the API down in `ExecutionEngineDiscovery.init()` - this may get called multiple times but it will always pass the same Quarto API object.
+
+The delay in `readTransportFile()` was not awaited previously, so it wasn't effective. Fixing it required making its caller functions async.
+
+String constants are defined in `src/constants.ts`.
diff --git a/src/resources/extension-subtrees/julia-engine/_extensions/julia-engine/_extension.yml b/src/resources/extension-subtrees/julia-engine/_extensions/julia-engine/_extension.yml
new file mode 100644
index 00000000000..d97f9d81777
--- /dev/null
+++ b/src/resources/extension-subtrees/julia-engine/_extensions/julia-engine/_extension.yml
@@ -0,0 +1,6 @@
+title: Quarto Julia Engine Extension
+version: 0.1.0
+quarto-required: ">=1.9.0"
+contributes:
+  engines:
+    - path: julia-engine.js
diff --git a/src/resources/extension-subtrees/julia-engine/_extensions/julia-engine/julia-engine.js b/src/resources/extension-subtrees/julia-engine/_extensions/julia-engine/julia-engine.js
new file mode 100644
index 00000000000..04c4f0a11d3
--- /dev/null
+++ b/src/resources/extension-subtrees/julia-engine/_extensions/julia-engine/julia-engine.js
@@ -0,0 +1,1197 @@
+// deno:https://jsr.io/@std/path/1.0.8/_os.ts
+var isWindows = globalThis.Deno?.build.os === "windows" || globalThis.navigator?.platform?.startsWith("Win") || globalThis.process?.platform?.startsWith("win") || false;
+
+// deno:https://jsr.io/@std/path/1.0.8/_common/assert_path.ts
+function assertPath(path) {
+  if (typeof path !== "string") {
+    throw new TypeError(`Path must be a string, received "${JSON.stringify(path)}"`);
+  }
+}
+
+// deno:https://jsr.io/@std/path/1.0.8/_common/constants.ts
+var CHAR_UPPERCASE_A = 65;
+var CHAR_LOWERCASE_A = 97;
+var CHAR_UPPERCASE_Z = 90;
+var CHAR_LOWERCASE_Z = 122;
+var CHAR_DOT = 46;
+var CHAR_FORWARD_SLASH = 47;
+var CHAR_BACKWARD_SLASH = 92;
+var CHAR_COLON = 58;
+
+// deno:https://jsr.io/@std/path/1.0.8/posix/_util.ts
+function isPosixPathSeparator(code) {
+  return code === CHAR_FORWARD_SLASH;
+}
+
+// deno:https://jsr.io/@std/path/1.0.8/windows/_util.ts
+function isPathSeparator(code) {
+  return code === CHAR_FORWARD_SLASH || code === CHAR_BACKWARD_SLASH;
+}
+function isWindowsDeviceRoot(code) {
+  return code >= CHAR_LOWERCASE_A && code <= CHAR_LOWERCASE_Z || code >= CHAR_UPPERCASE_A && code <= CHAR_UPPERCASE_Z;
+}
+
+// deno:https://jsr.io/@std/path/1.0.8/_common/normalize.ts
+function assertArg4(path) {
+  assertPath(path);
+  if (path.length === 0) return ".";
+}
+
+// deno:https://jsr.io/@std/path/1.0.8/_common/normalize_string.ts
+function normalizeString(path, allowAboveRoot, separator, isPathSeparator2) {
+  let res = "";
+  let lastSegmentLength = 0;
+  let lastSlash = -1;
+  let dots = 0;
+  let code;
+  for (let i = 0; i <= path.length; ++i) {
+    if (i < path.length) code = path.charCodeAt(i);
+    else if (isPathSeparator2(code)) break;
+    else code = CHAR_FORWARD_SLASH;
+    if (isPathSeparator2(code)) {
+      if (lastSlash === i - 1 || dots === 1) {
+      } else if (lastSlash !== i - 1 && dots === 2) {
+        if (res.length < 2 || lastSegmentLength !== 2 || res.charCodeAt(res.length - 1) !== CHAR_DOT || res.charCodeAt(res.length - 2) !== CHAR_DOT) {
+          if (res.length > 2) {
+            const lastSlashIndex = res.lastIndexOf(separator);
+            if (lastSlashIndex === -1) {
+              res = "";
+              lastSegmentLength = 0;
+            } else {
+              res = res.slice(0, lastSlashIndex);
+              lastSegmentLength = res.length - 1 - res.lastIndexOf(separator);
+            }
+            lastSlash = i;
+            dots = 0;
+            continue;
+          } else if (res.length === 2 || res.length === 1) {
+            res = "";
+            lastSegmentLength = 0;
+            lastSlash = i;
+            dots = 0;
+            continue;
+          }
+        }
+        if (allowAboveRoot) {
+          if (res.length > 0) res += `${separator}..`;
+          else res = "..";
+          lastSegmentLength = 2;
+        }
+      } else {
+        if (res.length > 0) res += separator + path.slice(lastSlash + 1, i);
+        else res = path.slice(lastSlash + 1, i);
+        lastSegmentLength = i - lastSlash - 1;
+      }
+      lastSlash = i;
+      dots = 0;
+    } else if (code === CHAR_DOT && dots !== -1) {
+      ++dots;
+    } else {
+      dots = -1;
+    }
+  }
+  return res;
+}
+
+// deno:https://jsr.io/@std/path/1.0.8/posix/normalize.ts
+function normalize(path) {
+  assertArg4(path);
+  const isAbsolute3 = isPosixPathSeparator(path.charCodeAt(0));
+  const trailingSeparator = isPosixPathSeparator(path.charCodeAt(path.length - 1));
+  path = normalizeString(path, !isAbsolute3, "/", isPosixPathSeparator);
+  if (path.length === 0 && !isAbsolute3) path = ".";
+  if (path.length > 0 && trailingSeparator) path += "/";
+  if (isAbsolute3) return `/${path}`;
+  return path;
+}
+
+// deno:https://jsr.io/@std/path/1.0.8/posix/join.ts
+function join(...paths) {
+  if (paths.length === 0) return ".";
+  paths.forEach((path) => assertPath(path));
+  const joined = paths.filter((path) => path.length > 0).join("/");
+  return joined === "" ? "." : normalize(joined);
+}
+
+// deno:https://jsr.io/@std/path/1.0.8/windows/normalize.ts
+function normalize2(path) {
+  assertArg4(path);
+  const len = path.length;
+  let rootEnd = 0;
+  let device;
+  let isAbsolute3 = false;
+  const code = path.charCodeAt(0);
+  if (len > 1) {
+    if (isPathSeparator(code)) {
+      isAbsolute3 = true;
+      if (isPathSeparator(path.charCodeAt(1))) {
+        let j = 2;
+        let last = j;
+        for (; j < len; ++j) {
+          if (isPathSeparator(path.charCodeAt(j))) break;
+        }
+        if (j < len && j !== last) {
+          const firstPart = path.slice(last, j);
+          last = j;
+          for (; j < len; ++j) {
+            if (!isPathSeparator(path.charCodeAt(j))) break;
+          }
+          if (j < len && j !== last) {
+            last = j;
+            for (; j < len; ++j) {
+              if (isPathSeparator(path.charCodeAt(j))) break;
+            }
+            if (j === len) {
+              return `\\\\${firstPart}\\${path.slice(last)}\\`;
+            } else if (j !== last) {
+              device = `\\\\${firstPart}\\${path.slice(last, j)}`;
+              rootEnd = j;
+            }
+          }
+        }
+      } else {
+        rootEnd = 1;
+      }
+    } else if (isWindowsDeviceRoot(code)) {
+      if (path.charCodeAt(1) === CHAR_COLON) {
+        device = path.slice(0, 2);
+        rootEnd = 2;
+        if (len > 2) {
+          if (isPathSeparator(path.charCodeAt(2))) {
+            isAbsolute3 = true;
+            rootEnd = 3;
+          }
+        }
+      }
+    }
+  } else if (isPathSeparator(code)) {
+    return "\\";
+  }
+  let tail;
+  if (rootEnd < len) {
+    tail = normalizeString(path.slice(rootEnd), !isAbsolute3, "\\", isPathSeparator);
+  } else {
+    tail = "";
+  }
+  if (tail.length === 0 && !isAbsolute3) tail = ".";
+  if (tail.length > 0 && isPathSeparator(path.charCodeAt(len - 1))) {
+    tail += "\\";
+  }
+  if (device === void 0) {
+    if (isAbsolute3) {
+      if (tail.length > 0) return `\\${tail}`;
+      else return "\\";
+    }
+    return tail;
+  } else if (isAbsolute3) {
+    if (tail.length > 0) return `${device}\\${tail}`;
+    else return `${device}\\`;
+  }
+  return device + tail;
+}
+
+// deno:https://jsr.io/@std/path/1.0.8/windows/join.ts
+function join2(...paths) {
+  paths.forEach((path) => assertPath(path));
+  paths = paths.filter((path) => path.length > 0);
+  if (paths.length === 0) return ".";
+  let needsReplace = true;
+  let slashCount = 0;
+  const firstPart = paths[0];
+  if (isPathSeparator(firstPart.charCodeAt(0))) {
+    ++slashCount;
+    const firstLen = firstPart.length;
+    if (firstLen > 1) {
+      if (isPathSeparator(firstPart.charCodeAt(1))) {
+        ++slashCount;
+        if (firstLen > 2) {
+          if (isPathSeparator(firstPart.charCodeAt(2))) ++slashCount;
+          else {
+            needsReplace = false;
+          }
+        }
+      }
+    }
+  }
+  let joined = paths.join("\\");
+  if (needsReplace) {
+    for (; slashCount < joined.length; ++slashCount) {
+      if (!isPathSeparator(joined.charCodeAt(slashCount))) break;
+    }
+    if (slashCount >= 2) joined = `\\${joined.slice(slashCount)}`;
+  }
+  return normalize2(joined);
+}
+
+// deno:https://jsr.io/@std/path/1.0.8/join.ts
+function join3(...paths) {
+  return isWindows ? join2(...paths) : join(...paths);
+}
+
+// deno:https://jsr.io/@std/path/1.0.8/posix/resolve.ts
+function resolve(...pathSegments) {
+  let resolvedPath = "";
+  let resolvedAbsolute = false;
+  for (let i = pathSegments.length - 1; i >= -1 && !resolvedAbsolute; i--) {
+    let path;
+    if (i >= 0) path = pathSegments[i];
+    else {
+      const { Deno: Deno2 } = globalThis;
+      if (typeof Deno2?.cwd !== "function") {
+        throw new TypeError("Resolved a relative path without a current working directory (CWD)");
+      }
+      path = Deno2.cwd();
+    }
+    assertPath(path);
+    if (path.length === 0) {
+      continue;
+    }
+    resolvedPath = `${path}/${resolvedPath}`;
+    resolvedAbsolute = isPosixPathSeparator(path.charCodeAt(0));
+  }
+  resolvedPath = normalizeString(resolvedPath, !resolvedAbsolute, "/", isPosixPathSeparator);
+  if (resolvedAbsolute) {
+    if (resolvedPath.length > 0) return `/${resolvedPath}`;
+    else return "/";
+  } else if (resolvedPath.length > 0) return resolvedPath;
+  else return ".";
+}
+
+// deno:https://jsr.io/@std/path/1.0.8/windows/resolve.ts
+function resolve2(...pathSegments) {
+  let resolvedDevice = "";
+  let resolvedTail = "";
+  let resolvedAbsolute = false;
+  for (let i = pathSegments.length - 1; i >= -1; i--) {
+    let path;
+    const { Deno: Deno2 } = globalThis;
+    if (i >= 0) {
+      path = pathSegments[i];
+    } else if (!resolvedDevice) {
+      if (typeof Deno2?.cwd !== "function") {
+        throw new TypeError("Resolved a drive-letter-less path without a current working directory (CWD)");
+      }
+      path = Deno2.cwd();
+    } else {
+      if (typeof Deno2?.env?.get !== "function" || typeof Deno2?.cwd !== "function") {
+        throw new TypeError("Resolved a relative path without a current working directory (CWD)");
+      }
+      path = Deno2.cwd();
+      if (path === void 0 || path.slice(0, 3).toLowerCase() !== `${resolvedDevice.toLowerCase()}\\`) {
+        path = `${resolvedDevice}\\`;
+      }
+    }
+    assertPath(path);
+    const len = path.length;
+    if (len === 0) continue;
+    let rootEnd = 0;
+    let device = "";
+    let isAbsolute3 = false;
+    const code = path.charCodeAt(0);
+    if (len > 1) {
+      if (isPathSeparator(code)) {
+        isAbsolute3 = true;
+        if (isPathSeparator(path.charCodeAt(1))) {
+          let j = 2;
+          let last = j;
+          for (; j < len; ++j) {
+            if (isPathSeparator(path.charCodeAt(j))) break;
+          }
+          if (j < len && j !== last) {
+            const firstPart = path.slice(last, j);
+            last = j;
+            for (; j < len; ++j) {
+              if (!isPathSeparator(path.charCodeAt(j))) break;
+            }
+            if (j < len && j !== last) {
+              last = j;
+              for (; j < len; ++j) {
+                if (isPathSeparator(path.charCodeAt(j))) break;
+              }
+              if (j === len) {
+                device = `\\\\${firstPart}\\${path.slice(last)}`;
+                rootEnd = j;
+              } else if (j !== last) {
+                device = `\\\\${firstPart}\\${path.slice(last, j)}`;
+                rootEnd = j;
+              }
+            }
+          }
+        } else {
+          rootEnd = 1;
+        }
+      } else if (isWindowsDeviceRoot(code)) {
+        if (path.charCodeAt(1) === CHAR_COLON) {
+          device = path.slice(0, 2);
+          rootEnd = 2;
+          if (len > 2) {
+            if (isPathSeparator(path.charCodeAt(2))) {
+              isAbsolute3 = true;
+              rootEnd = 3;
+            }
+          }
+        }
+      }
+    } else if (isPathSeparator(code)) {
+      rootEnd = 1;
+      isAbsolute3 = true;
+    }
+    if (device.length > 0 && resolvedDevice.length > 0 && device.toLowerCase() !== resolvedDevice.toLowerCase()) {
+      continue;
+    }
+    if (resolvedDevice.length === 0 && device.length > 0) {
+      resolvedDevice = device;
+    }
+    if (!resolvedAbsolute) {
+      resolvedTail = `${path.slice(rootEnd)}\\${resolvedTail}`;
+      resolvedAbsolute = isAbsolute3;
+    }
+    if (resolvedAbsolute && resolvedDevice.length > 0) break;
+  }
+  resolvedTail = normalizeString(resolvedTail, !resolvedAbsolute, "\\", isPathSeparator);
+  return resolvedDevice + (resolvedAbsolute ? "\\" : "") + resolvedTail || ".";
+}
+
+// deno:https://jsr.io/@std/path/1.0.8/resolve.ts
+function resolve3(...pathSegments) {
+  return isWindows ? resolve2(...pathSegments) : resolve(...pathSegments);
+}
+
+// deno:https://jsr.io/@std/fs/1.0.16/exists.ts
+function existsSync(path, options) {
+  try {
+    const stat = Deno.statSync(path);
+    if (options && (options.isReadable || options.isDirectory || options.isFile)) {
+      if (options.isDirectory && options.isFile) {
+        throw new TypeError("ExistsOptions.options.isDirectory and ExistsOptions.options.isFile must not be true together");
+      }
+      if (options.isDirectory && !stat.isDirectory || options.isFile && !stat.isFile) {
+        return false;
+      }
+      if (options.isReadable) {
+        return fileIsReadable(stat);
+      }
+    }
+    return true;
+  } catch (error) {
+    if (error instanceof Deno.errors.NotFound) {
+      return false;
+    }
+    if (error instanceof Deno.errors.PermissionDenied) {
+      if (Deno.permissions.querySync({
+        name: "read",
+        path
+      }).state === "granted") {
+        return !options?.isReadable;
+      }
+    }
+    throw error;
+  }
+}
+function fileIsReadable(stat) {
+  if (stat.mode === null) {
+    return true;
+  } else if (Deno.uid() === stat.uid) {
+    return (stat.mode & 256) === 256;
+  } else if (Deno.gid() === stat.gid) {
+    return (stat.mode & 32) === 32;
+  }
+  return (stat.mode & 4) === 4;
+}
+
+// deno:https://jsr.io/@std/encoding/1.0.9/_common64.ts
+var padding = "=".charCodeAt(0);
+var alphabet = {
+  Base64: new TextEncoder().encode("ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789+/"),
+  Base64Url: new TextEncoder().encode("ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789-_")
+};
+var rAlphabet = {
+  Base64: new Uint8Array(128).fill(64),
+  Base64Url: new Uint8Array(128).fill(64)
+};
+alphabet.Base64.forEach((byte, i) => rAlphabet.Base64[byte] = i);
+alphabet.Base64Url.forEach((byte, i) => rAlphabet.Base64Url[byte] = i);
+function calcSizeBase64(originalSize) {
+  return ((originalSize + 2) / 3 | 0) * 4;
+}
+function encode(buffer, i, o, alphabet3, padding3) {
+  i += 2;
+  for (; i < buffer.length; i += 3) {
+    const x = buffer[i - 2] << 16 | buffer[i - 1] << 8 | buffer[i];
+    buffer[o++] = alphabet3[x >> 18];
+    buffer[o++] = alphabet3[x >> 12 & 63];
+    buffer[o++] = alphabet3[x >> 6 & 63];
+    buffer[o++] = alphabet3[x & 63];
+  }
+  switch (i) {
+    case buffer.length + 1: {
+      const x = buffer[i - 2] << 16;
+      buffer[o++] = alphabet3[x >> 18];
+      buffer[o++] = alphabet3[x >> 12 & 63];
+      buffer[o++] = padding3;
+      buffer[o++] = padding3;
+      break;
+    }
+    case buffer.length: {
+      const x = buffer[i - 2] << 16 | buffer[i - 1] << 8;
+      buffer[o++] = alphabet3[x >> 18];
+      buffer[o++] = alphabet3[x >> 12 & 63];
+      buffer[o++] = alphabet3[x >> 6 & 63];
+      buffer[o++] = padding3;
+      break;
+    }
+  }
+  return o;
+}
+
+// deno:https://jsr.io/@std/encoding/1.0.9/_common_detach.ts
+function detach(buffer, maxSize) {
+  const originalSize = buffer.length;
+  if (buffer.byteOffset) {
+    const b = new Uint8Array(buffer.buffer);
+    b.set(buffer);
+    buffer = b.subarray(0, originalSize);
+  }
+  buffer = new Uint8Array(buffer.buffer.transfer(maxSize));
+  buffer.set(buffer.subarray(0, originalSize), maxSize - originalSize);
+  return [
+    buffer,
+    maxSize - originalSize
+  ];
+}
+
+// deno:https://jsr.io/@std/encoding/1.0.9/base64.ts
+var padding2 = "=".charCodeAt(0);
+var alphabet2 = new TextEncoder().encode("ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789+/");
+var rAlphabet2 = new Uint8Array(128).fill(64);
+alphabet2.forEach((byte, i) => rAlphabet2[byte] = i);
+function encodeBase64(data) {
+  if (typeof data === "string") {
+    data = new TextEncoder().encode(data);
+  } else if (data instanceof ArrayBuffer) data = new Uint8Array(data).slice();
+  else data = data.slice();
+  const [output, i] = detach(data, calcSizeBase64(data.length));
+  encode(output, i, 0, alphabet2, padding2);
+  return new TextDecoder().decode(output);
+}
+
+// src/constants.ts
+var kJuliaEngine = "julia";
+var kExecuteDaemon = "daemon";
+var kExecuteDaemonRestart = "daemon-restart";
+var kExecuteDebug = "debug";
+var kFigDpi = "fig-dpi";
+var kFigFormat = "fig-format";
+var kFigPos = "fig-pos";
+var kIpynbProduceSourceNotebook = "produce-source-notebook";
+var kKeepHidden = "keep-hidden";
+
+// src/julia-engine.ts
+var isWindows2 = Deno.build.os === "windows";
+var quarto;
+function safeRemoveSync(file, options = {}) {
+  try {
+    Deno.removeSync(file, options);
+  } catch (e) {
+    if (existsSync(file)) {
+      throw e;
+    }
+  }
+}
+var delay = (ms) => new Promise((resolve4) => setTimeout(resolve4, ms));
+var juliaEngineDiscovery = {
+  init: (quartoAPI) => {
+    quarto = quartoAPI;
+  },
+  name: kJuliaEngine,
+  defaultExt: ".qmd",
+  defaultYaml: () => [],
+  defaultContent: () => [
+    "```{julia}",
+    "1 + 1",
+    "```"
+  ],
+  validExtensions: () => [],
+  claimsFile: (file, _ext) => {
+    return quarto.jupyter.isPercentScript(file, [
+      ".jl"
+    ]);
+  },
+  claimsLanguage: (language) => {
+    return language.toLowerCase() === "julia";
+  },
+  canFreeze: true,
+  generatesFigures: true,
+  ignoreDirs: () => {
+    return [];
+  },
+  /**
+   * Populate engine-specific CLI commands
+   */
+  populateCommand: (command) => populateJuliaEngineCommand(command),
+  /**
+   * Check Julia installation
+   */
+  checkInstallation: async () => {
+    await quarto.console.withSpinner({
+      message: "Checking Julia installation..."
+    }, async () => {
+      await delay(3e3);
+    });
+  },
+  /**
+   * Launch a dynamic execution engine with project context
+   */
+  launch: (context) => {
+    return {
+      name: juliaEngineDiscovery.name,
+      canFreeze: juliaEngineDiscovery.canFreeze,
+      partitionedMarkdown: (file) => {
+        return Promise.resolve(quarto.markdownRegex.partition(Deno.readTextFileSync(file)));
+      },
+      // TODO: ask dragonstyle what to do here
+      executeTargetSkipped: () => false,
+      // TODO: just return dependencies from execute and this can do nothing
+      dependencies: (_options) => {
+        const includes = {};
+        return Promise.resolve({
+          includes
+        });
+      },
+      // TODO: this can also probably do nothing
+      postprocess: (_options) => {
+        return Promise.resolve();
+      },
+      canKeepSource: (_target) => {
+        return true;
+      },
+      markdownForFile(file) {
+        if (quarto.jupyter.isPercentScript(file, [
+          ".jl"
+        ])) {
+          return Promise.resolve(quarto.mappedString.fromString(quarto.jupyter.percentScriptToMarkdown(file)));
+        } else {
+          return Promise.resolve(quarto.mappedString.fromFile(file));
+        }
+      },
+      execute: async (options) => {
+        options.target.source;
+        let executeDaemon = options.format.execute[kExecuteDaemon];
+        if (executeDaemon === null || executeDaemon === void 0) {
+          executeDaemon = quarto.system.isInteractiveSession() && !quarto.system.runningInCI();
+        }
+        const execOptions = {
+          ...options,
+          target: {
+            ...options.target,
+            input: quarto.path.absolute(options.target.input)
+          }
+        };
+        const juliaExecOptions = {
+          oneShot: !executeDaemon,
+          ...execOptions
+        };
+        const nb = await executeJulia(juliaExecOptions);
+        if (!nb) {
+          quarto.console.error("Execution of notebook returned undefined");
+          return Promise.reject();
+        }
+        nb.metadata.kernelspec = {
+          display_name: "Julia",
+          name: "julia",
+          language: "julia"
+        };
+        const assets = quarto.jupyter.assets(options.target.input, options.format.pandoc.to);
+        const result = await quarto.jupyter.toMarkdown(nb, {
+          executeOptions: options,
+          language: nb.metadata.kernelspec.language.toLowerCase(),
+          assets,
+          execute: options.format.execute,
+          keepHidden: options.format.render[kKeepHidden],
+          toHtml: quarto.format.isHtmlCompatible(options.format),
+          toLatex: quarto.format.isLatexOutput(options.format.pandoc),
+          toMarkdown: quarto.format.isMarkdownOutput(options.format),
+          toIpynb: quarto.format.isIpynbOutput(options.format.pandoc),
+          toPresentation: quarto.format.isPresentationOutput(options.format.pandoc),
+          figFormat: options.format.execute[kFigFormat],
+          figDpi: options.format.execute[kFigDpi],
+          figPos: options.format.render[kFigPos],
+          // preserveCellMetadata,
+          preserveCodeCellYaml: options.format.render[kIpynbProduceSourceNotebook] === true
+        });
+        let includes;
+        let engineDependencies;
+        if (options.dependencies) {
+          includes = quarto.jupyter.resultIncludes(options.tempDir, result.dependencies);
+        } else {
+          const dependencies = quarto.jupyter.resultEngineDependencies(result.dependencies);
+          if (dependencies) {
+            engineDependencies = {
+              [kJuliaEngine]: dependencies
+            };
+          }
+        }
+        const outputs = result.cellOutputs.map((output) => output.markdown);
+        if (result.notebookOutputs) {
+          if (result.notebookOutputs.prefix) {
+            outputs.unshift(result.notebookOutputs.prefix);
+          }
+          if (result.notebookOutputs.suffix) {
+            outputs.push(result.notebookOutputs.suffix);
+          }
+        }
+        const markdown = outputs.join("");
+        return {
+          engine: kJuliaEngine,
+          markdown,
+          supporting: [
+            join3(assets.base_dir, assets.supporting_dir)
+          ],
+          filters: [],
+          pandoc: result.pandoc,
+          includes,
+          engineDependencies,
+          preserve: result.htmlPreserve,
+          postProcess: result.htmlPreserve && Object.keys(result.htmlPreserve).length > 0
+        };
+      },
+      target: (file, _quiet, markdown) => {
+        if (markdown === void 0) {
+          markdown = quarto.mappedString.fromFile(file);
+        }
+        const target = {
+          source: file,
+          input: file,
+          markdown,
+          metadata: quarto.markdownRegex.extractYaml(markdown.value)
+        };
+        return Promise.resolve(target);
+      }
+    };
+  }
+};
+var julia_engine_default = juliaEngineDiscovery;
+function juliaCmd() {
+  return Deno.env.get("QUARTO_JULIA") ?? "julia";
+}
+function powershell_argument_list_to_string(...args) {
+  const inner = args.map((arg) => `"${arg}"`).join(" ");
+  return `'${inner}'`;
+}
+async function startOrReuseJuliaServer(options) {
+  const transportFile = juliaTransportFile();
+  if (!existsSync(transportFile)) {
+    trace(options, `Transport file ${transportFile} doesn't exist`);
+    quarto.console.info("Starting julia control server process. This might take a while...");
+    let juliaProject = Deno.env.get("QUARTO_JULIA_PROJECT");
+    if (juliaProject === void 0) {
+      await ensureQuartoNotebookRunnerEnvironment(options);
+      juliaProject = quarto.path.runtime("julia");
+    } else {
+      juliaProject = quarto.path.toForwardSlashes(juliaProject);
+      trace(options, `Custom julia project set via QUARTO_JULIA_PROJECT="${juliaProject}". Checking if QuartoNotebookRunner can be loaded.`);
+      const qnrTestCommand = new Deno.Command(juliaCmd(), {
+        args: [
+          "--startup-file=no",
+          `--project=${juliaProject}`,
+          "-e",
+          "using QuartoNotebookRunner"
+        ],
+        env: {
+          // ignore the main env
+          "JULIA_LOAD_PATH": isWindows2 ? "@;@stdlib" : "@:@stdlib"
+        }
+      });
+      const qnrTestProc = qnrTestCommand.spawn();
+      const result = await qnrTestProc.output();
+      if (!result.success) {
+        throw Error(`Executing \`using QuartoNotebookRunner\` failed with QUARTO_JULIA_PROJECT="${juliaProject}". Ensure that this project exists, has QuartoNotebookRunner installed and is instantiated correctly.`);
+      }
+      trace(options, `QuartoNotebookRunner could be loaded successfully.`);
+    }
+    if (isWindows2) {
+      const command = new Deno.Command("PowerShell", {
+        args: [
+          "-Command",
+          "Start-Process",
+          juliaCmd(),
+          "-ArgumentList",
+          powershell_argument_list_to_string("--startup-file=no", `--project=${juliaProject}`, quarto.path.resource("julia", "quartonotebookrunner.jl"), transportFile, juliaServerLogFile()),
+          "-WindowStyle",
+          "Hidden"
+        ],
+        env: {
+          "JULIA_LOAD_PATH": "@;@stdlib"
+        }
+      });
+      trace(options, "Starting detached julia server through powershell, once transport file exists, server should be running.");
+      const result = command.outputSync();
+      if (!result.success) {
+        throw new Error(new TextDecoder().decode(result.stderr));
+      }
+    } else {
+      const command = new Deno.Command(juliaCmd(), {
+        args: [
+          "--startup-file=no",
+          quarto.path.resource("julia", "start_quartonotebookrunner_detached.jl"),
+          juliaCmd(),
+          juliaProject,
+          quarto.path.resource("julia", "quartonotebookrunner.jl"),
+          transportFile,
+          juliaServerLogFile()
+        ],
+        env: {
+          "JULIA_LOAD_PATH": "@:@stdlib"
+        }
+      });
+      trace(options, "Starting detached julia server through julia, once transport file exists, server should be running.");
+      const result = command.outputSync();
+      if (!result.success) {
+        throw new Error(new TextDecoder().decode(result.stderr));
+      }
+    }
+  } else {
+    trace(options, `Transport file ${transportFile} exists, reusing server.`);
+    return {
+      reused: true
+    };
+  }
+  return {
+    reused: false
+  };
+}
+async function ensureQuartoNotebookRunnerEnvironment(options) {
+  const runtimeDir = quarto.path.runtime("julia");
+  const projectTomlTemplate = quarto.path.resource("julia", "Project.toml");
+  const projectToml = join3(runtimeDir, "Project.toml");
+  Deno.writeFileSync(projectToml, Deno.readFileSync(projectTomlTemplate));
+  const command = new Deno.Command(juliaCmd(), {
+    args: [
+      "--startup-file=no",
+      `--project=${runtimeDir}`,
+      quarto.path.resource("julia", "ensure_environment.jl")
+    ]
+  });
+  const proc = command.spawn();
+  const { success } = await proc.output();
+  if (!success) {
+    throw new Error("Ensuring an updated julia server environment failed");
+  }
+  return Promise.resolve();
+}
+async function pollTransportFile(options) {
+  const transportFile = juliaTransportFile();
+  for (let i = 0; i < 15; i++) {
+    if (existsSync(transportFile)) {
+      const transportOptions = await readTransportFile(transportFile);
+      trace(options, "Transport file read successfully.");
+      return transportOptions;
+    }
+    trace(options, "Transport file did not exist, yet.");
+    await delay(i * 100);
+  }
+  return Promise.reject();
+}
+async function readTransportFile(transportFile) {
+  let content = Deno.readTextFileSync(transportFile);
+  let i = 0;
+  while (i < 20 && !content.endsWith("\n")) {
+    await delay(100);
+    content = Deno.readTextFileSync(transportFile);
+    i += 1;
+  }
+  if (!content.endsWith("\n")) {
+    throw "Read invalid transport file that did not end with a newline";
+  }
+  return JSON.parse(content);
+}
+async function getReadyServerConnection(transportOptions, executeOptions) {
+  const conn = await Deno.connect({
+    port: transportOptions.port
+  });
+  const isready = writeJuliaCommand(conn, {
+    type: "isready",
+    content: {}
+  }, transportOptions.key, executeOptions);
+  const timeoutMilliseconds = 1e4;
+  const timeout = new Promise((accept, _) => setTimeout(() => {
+    accept(`Timed out after getting no response for ${timeoutMilliseconds} milliseconds.`);
+  }, timeoutMilliseconds));
+  const result = await Promise.race([
+    isready,
+    timeout
+  ]);
+  if (typeof result === "string") {
+    return result;
+  } else if (result !== true) {
+    conn.close();
+    return `Expected isready command to return true, returned ${isready} instead. Closing connection.`;
+  } else {
+    return conn;
+  }
+}
+async function getJuliaServerConnection(options) {
+  const { reused } = await startOrReuseJuliaServer(options);
+  let transportOptions;
+  try {
+    transportOptions = await pollTransportFile(options);
+  } catch (err) {
+    if (!reused) {
+      quarto.console.info("No transport file was found after the timeout. This is the log from the server process:");
+      quarto.console.info("#### BEGIN LOG ####");
+      printJuliaServerLog();
+      quarto.console.info("#### END LOG ####");
+    }
+    throw err;
+  }
+  if (!reused) {
+    quarto.console.info("Julia server process started.");
+  }
+  trace(options, `Connecting to server at port ${transportOptions.port}, pid ${transportOptions.pid}`);
+  try {
+    const conn = await getReadyServerConnection(transportOptions, options);
+    if (typeof conn === "string") {
+      throw new Error(conn);
+    } else {
+      return conn;
+    }
+  } catch (e) {
+    if (reused) {
+      trace(options, "Connecting to server failed, a transport file was reused so it might be stale. Delete transport file and retry.");
+      safeRemoveSync(juliaTransportFile());
+      return await getJuliaServerConnection(options);
+    } else {
+      quarto.console.error("Connecting to server failed. A transport file was successfully created by the server process, so something in the server process might be broken.");
+      throw e;
+    }
+  }
+}
+function firstSignificantLine(str, n) {
+  const lines = str.split("\n");
+  for (const line of lines) {
+    const trimmedLine = line.trim();
+    if (!trimmedLine.startsWith("#|") && trimmedLine !== "") {
+      if (trimmedLine.length <= n) {
+        return trimmedLine;
+      } else {
+        return trimmedLine.substring(0, n - 1) + "\u2026";
+      }
+    }
+  }
+  return "";
+}
+function getConsoleColumns() {
+  try {
+    return Deno.consoleSize().columns ?? null;
+  } catch (_error) {
+    return null;
+  }
+}
+function buildSourceRanges(markdown) {
+  const lines = quarto.mappedString.splitLines(markdown);
+  const sourceRanges = [];
+  let currentRange = null;
+  lines.forEach((line, index) => {
+    const mapResult = line.map(0, true);
+    if (mapResult) {
+      const { originalString } = mapResult;
+      const lineCol = quarto.mappedString.indexToLineCol(originalString, mapResult.index);
+      const fileName = originalString.fileName ? resolve3(originalString.fileName) : void 0;
+      const sourceLineNum = lineCol.line;
+      if (currentRange && currentRange.file === fileName && fileName !== void 0 && currentRange.sourceLines && currentRange.sourceLines[1] === sourceLineNum) {
+        currentRange.lines[1] = index + 1;
+        currentRange.sourceLines[1] = sourceLineNum + 1;
+      } else {
+        if (currentRange) {
+          sourceRanges.push(currentRange);
+        }
+        currentRange = {
+          lines: [
+            index + 1,
+            index + 1
+          ]
+        };
+        if (fileName !== void 0) {
+          currentRange.file = fileName;
+          currentRange.sourceLines = [
+            sourceLineNum + 1,
+            sourceLineNum + 1
+          ];
+        }
+      }
+    } else {
+      if (currentRange) {
+        sourceRanges.push(currentRange);
+        currentRange = null;
+      }
+    }
+  });
+  if (currentRange) {
+    sourceRanges.push(currentRange);
+  }
+  return sourceRanges;
+}
+async function executeJulia(options) {
+  const conn = await getJuliaServerConnection(options);
+  const transportOptions = await pollTransportFile(options);
+  const file = options.target.input;
+  if (options.oneShot || options.format.execute[kExecuteDaemonRestart]) {
+    const isopen = await writeJuliaCommand(conn, {
+      type: "isopen",
+      content: {
+        file
+      }
+    }, transportOptions.key, options);
+    if (isopen) {
+      await writeJuliaCommand(conn, {
+        type: "close",
+        content: {
+          file
+        }
+      }, transportOptions.key, options);
+    }
+  }
+  const sourceRanges = buildSourceRanges(options.target.markdown);
+  const response = await writeJuliaCommand(conn, {
+    type: "run",
+    content: {
+      file,
+      options,
+      sourceRanges
+    }
+  }, transportOptions.key, options, (update) => {
+    const n = update.nChunks.toString();
+    const i = update.chunkIndex.toString();
+    const i_padded = `${" ".repeat(n.length - i.length)}${i}`;
+    const ncols = getConsoleColumns() ?? 80;
+    const firstPart = `Running [${i_padded}/${n}] at line ${update.line}:  `;
+    const firstPartLength = firstPart.length;
+    const sigLine = firstSignificantLine(update.source, Math.max(0, ncols - firstPartLength));
+    quarto.console.info(`${firstPart}${sigLine}`);
+  });
+  if (options.oneShot) {
+    await writeJuliaCommand(conn, {
+      type: "close",
+      content: {
+        file
+      }
+    }, transportOptions.key, options);
+  }
+  return response.notebook;
+}
+function isProgressUpdate(data) {
+  return data && data.type === "progress_update";
+}
+function isServerCommandError(data) {
+  return data && typeof data.error === "string";
+}
+async function writeJuliaCommand(conn, command, secret, options, onProgressUpdate) {
+  const payload = JSON.stringify(command);
+  const key = await crypto.subtle.importKey("raw", new TextEncoder().encode(secret), {
+    name: "HMAC",
+    hash: "SHA-256"
+  }, true, [
+    "sign"
+  ]);
+  const canonicalRequestBytes = new TextEncoder().encode(payload);
+  const signatureArrayBuffer = await crypto.subtle.sign("HMAC", key, canonicalRequestBytes);
+  const signatureBytes = new Uint8Array(signatureArrayBuffer);
+  const hmac = encodeBase64(signatureBytes);
+  const message = JSON.stringify({
+    hmac,
+    payload
+  }) + "\n";
+  const messageBytes = new TextEncoder().encode(message);
+  trace(options, `write command "${command.type}" to socket server`);
+  const bytesWritten = await conn.write(messageBytes);
+  if (bytesWritten !== messageBytes.length) {
+    throw new Error("Internal Error");
+  }
+  let restOfPreviousResponse = new Uint8Array(512);
+  let restLength = 0;
+  while (true) {
+    const respArray = [];
+    let respLength = 0;
+    let response = "";
+    const newlineAt = restOfPreviousResponse.indexOf(10);
+    if (newlineAt !== -1 && newlineAt < restLength) {
+      response = new TextDecoder().decode(restOfPreviousResponse.slice(0, newlineAt));
+      restOfPreviousResponse.set(restOfPreviousResponse.slice(newlineAt + 1, restLength));
+      restLength -= newlineAt + 1;
+    } else {
+      respArray.push(restOfPreviousResponse.slice(0, restLength));
+      respLength += restLength;
+      while (true) {
+        const buffer = new Uint8Array(512);
+        const bytesRead = await conn.read(buffer);
+        if (bytesRead === null) {
+          break;
+        }
+        if (bytesRead > 0) {
+          const bufferNewlineAt = buffer.indexOf(10);
+          if (bufferNewlineAt === -1 || bufferNewlineAt >= bytesRead) {
+            respArray.push(buffer.slice(0, bytesRead));
+            restLength = 0;
+            respLength += bytesRead;
+          } else {
+            respArray.push(buffer.slice(0, bufferNewlineAt));
+            respLength += bufferNewlineAt;
+            restOfPreviousResponse.set(buffer.slice(bufferNewlineAt + 1, bytesRead));
+            restLength = bytesRead - bufferNewlineAt - 1;
+            let respBuffer = new Uint8Array(respLength);
+            let offset = 0;
+            respArray.forEach((item) => {
+              respBuffer.set(item, offset);
+              offset += item.length;
+            });
+            response = new TextDecoder().decode(respBuffer);
+            break;
+          }
+        }
+      }
+    }
+    trace(options, "received server response");
+    const json = response.split("\n")[0];
+    const responseData = JSON.parse(json);
+    if (isServerCommandError(responseData)) {
+      const data2 = responseData;
+      let errorMessage = `Julia server returned error after receiving "${command.type}" command:
+
+${data2.error}`;
+      if (data2.juliaError) {
+        errorMessage += `
+
+The underlying Julia error was:
+
+${data2.juliaError}`;
+      }
+      throw new Error(errorMessage);
+    }
+    let data;
+    if (command.type === "run") {
+      const data_or_update = responseData;
+      if (isProgressUpdate(data_or_update)) {
+        const update = data_or_update;
+        trace(options, "received progress update response, listening for further responses");
+        if (onProgressUpdate !== void 0) {
+          onProgressUpdate(update);
+        }
+        continue;
+      } else {
+        data = data_or_update;
+      }
+    } else {
+      data = responseData;
+    }
+    return data;
+  }
+}
+function juliaRuntimeDir() {
+  try {
+    return quarto.path.runtime("julia");
+  } catch (e) {
+    quarto.console.error("Could not create julia runtime directory.");
+    quarto.console.error("This is possibly a permission issue in the environment Quarto is running in.");
+    quarto.console.error("Please consult the following documentation for more information:");
+    quarto.console.error("https://github.com/quarto-dev/quarto-cli/issues/4594#issuecomment-1619177667");
+    throw e;
+  }
+}
+function juliaTransportFile() {
+  return join3(juliaRuntimeDir(), "julia_transport.txt");
+}
+function juliaServerLogFile() {
+  return join3(juliaRuntimeDir(), "julia_server_log.txt");
+}
+function trace(options, msg) {
+  if (options.format?.execute[kExecuteDebug] === true) {
+    quarto.console.info("- " + msg, {
+      bold: true
+    });
+  }
+}
+function populateJuliaEngineCommand(command) {
+  command.command("status", "Status").description("Get status information on the currently running Julia server process.").action(logStatus).command("kill", "Kill server").description("Kill the control server if it is currently running. This will also kill all notebook worker processes.").action(killJuliaServer).command("log", "Print julia server log").description("Print the content of the julia server log file if it exists which can be used to diagnose problems.").action(printJuliaServerLog).command("close", "Close the worker for a given notebook. If it is currently running, it will not be interrupted.").arguments("<file:string>").option("-f, --force", "Force closing. This will terminate the worker if it is running.", {
+    default: false
+  }).action(async (options, file) => {
+    await closeWorker(file, options.force);
+  }).command("stop", "Stop the server").description("Send a message to the server that it should close all notebooks and exit. This will fail if any notebooks are not idle.").action(stopServer);
+  return;
+}
+async function logStatus() {
+  const transportFile = juliaTransportFile();
+  if (!existsSync(transportFile)) {
+    quarto.console.info("Julia control server is not running.");
+    return;
+  }
+  const transportOptions = await readTransportFile(transportFile);
+  const conn = await getReadyServerConnection(transportOptions, {});
+  const successfullyConnected = typeof conn !== "string";
+  if (successfullyConnected) {
+    const status = await writeJuliaCommand(conn, {
+      type: "status",
+      content: {}
+    }, transportOptions.key, {});
+    Deno.stdout.writeSync(new TextEncoder().encode(status));
+    conn.close();
+  } else {
+    quarto.console.info(`Found transport file but can't connect to control server.`);
+  }
+}
+async function killJuliaServer() {
+  const transportFile = juliaTransportFile();
+  if (!existsSync(transportFile)) {
+    quarto.console.info("Julia control server is not running.");
+    return;
+  }
+  const transportOptions = await readTransportFile(transportFile);
+  Deno.kill(transportOptions.pid, "SIGTERM");
+  quarto.console.info("Sent SIGTERM to server process");
+}
+function printJuliaServerLog() {
+  if (existsSync(juliaServerLogFile())) {
+    Deno.stdout.writeSync(Deno.readFileSync(juliaServerLogFile()));
+  } else {
+    quarto.console.info("Server log file doesn't exist");
+  }
+  return;
+}
+async function connectAndWriteJuliaCommandToRunningServer(command) {
+  const transportFile = juliaTransportFile();
+  if (!existsSync(transportFile)) {
+    throw new Error("Julia control server is not running.");
+  }
+  const transportOptions = await readTransportFile(transportFile);
+  const conn = await getReadyServerConnection(transportOptions, {});
+  const successfullyConnected = typeof conn !== "string";
+  if (successfullyConnected) {
+    const result = await writeJuliaCommand(conn, command, transportOptions.key, {});
+    conn.close();
+    return result;
+  } else {
+    throw new Error(`Found transport file but can't connect to control server.`);
+  }
+}
+async function closeWorker(file, force) {
+  const absfile = quarto.path.absolute(file);
+  await connectAndWriteJuliaCommandToRunningServer({
+    type: force ? "forceclose" : "close",
+    content: {
+      file: absfile
+    }
+  });
+  quarto.console.info(`Worker ${force ? "force-" : ""}closed successfully.`);
+}
+async function stopServer() {
+  const result = await connectAndWriteJuliaCommandToRunningServer({
+    type: "stop",
+    content: {}
+  });
+  quarto.console.info(result.message);
+}
+export {
+  julia_engine_default as default,
+  juliaEngineDiscovery,
+  juliaServerLogFile,
+  juliaTransportFile
+};
diff --git a/src/resources/extension-subtrees/julia-engine/_quarto.yml b/src/resources/extension-subtrees/julia-engine/_quarto.yml
new file mode 100644
index 00000000000..b8bae5830fa
--- /dev/null
+++ b/src/resources/extension-subtrees/julia-engine/_quarto.yml
@@ -0,0 +1,2 @@
+project:
+  type: default
diff --git a/src/resources/extension-subtrees/julia-engine/example.qmd b/src/resources/extension-subtrees/julia-engine/example.qmd
new file mode 100644
index 00000000000..449ad1232eb
--- /dev/null
+++ b/src/resources/extension-subtrees/julia-engine/example.qmd
@@ -0,0 +1,80 @@
+---
+title: "Julia Violin Plots Example"
+author: us.anthropic.claude-sonnet-4-5-20250929-v1:0
+format:
+  html:
+    code-fold: true
+    fig-width: 7
+    fig-height: 5
+    fig-format: svg
+    fig-responsive: true
+    html-math-method: katex
+    code-tools: true
+engine: julia
+---
+
+## Iris Dataset Visualization
+
+This example demonstrates how to create violin plots with Julia. We'll visualize the famous Iris dataset which contains measurements for three species of iris flowers.
+
+```{julia}
+#| label: fig-violin-grid
+# Load required packages
+using RDatasets
+using Plots
+using StatsPlots
+
+# Load the Iris dataset
+iris = dataset("datasets", "iris")
+
+# Create four violin plots - one for each measurement
+p1 = @df iris violin(:Species, :SepalLength,
+                legend=false,
+                ylabel="Sepal Length (cm)",
+                fillalpha=0.7,
+                title="Sepal Length",
+                size=(300, 250))
+
+p2 = @df iris violin(:Species, :SepalWidth,
+                legend=false,
+                ylabel="Sepal Width (cm)",
+                fillalpha=0.7,
+                color=:green,
+                title="Sepal Width",
+                size=(300, 250))
+
+p3 = @df iris violin(:Species, :PetalLength,
+                legend=false,
+                ylabel="Petal Length (cm)",
+                fillalpha=0.7,
+                color=:orange,
+                title="Petal Length",
+                size=(300, 250))
+
+p4 = @df iris violin(:Species, :PetalWidth,
+                legend=false,
+                ylabel="Petal Width (cm)",
+                fillalpha=0.7,
+                color=:red,
+                title="Petal Width",
+                size=(300, 250))
+
+plot(p1, p2, p3, p4,
+     layout=(2,2),
+     size=(800, 800),
+     titlefontsize=10,
+     guidefontsize=9,
+     tickfontsize=7)
+```
+
+::: {.callout-note}
+## What is a violin plot?
+
+A violin plot shows the distribution of data across categories. The width of each "violin" represents the density of data points at that value, making it easy to compare distributions between groups.
+
+In this example, we can see that:
+
+- *Setosa* has the shortest petals but widest sepals
+- *Virginica* has the longest petals and sepals
+- *Versicolor* falls between the other two species for most measurements
+:::
\ No newline at end of file
diff --git a/src/resources/extension-subtrees/julia-engine/src/constants.ts b/src/resources/extension-subtrees/julia-engine/src/constants.ts
new file mode 100644
index 00000000000..1664bf2c2fe
--- /dev/null
+++ b/src/resources/extension-subtrees/julia-engine/src/constants.ts
@@ -0,0 +1,15 @@
+/*
+ * constants.ts
+ *
+ * Constants for Julia engine extension
+ */
+
+export const kJuliaEngine = "julia";
+export const kExecuteDaemon = "daemon";
+export const kExecuteDaemonRestart = "daemon-restart";
+export const kExecuteDebug = "debug";
+export const kFigDpi = "fig-dpi";
+export const kFigFormat = "fig-format";
+export const kFigPos = "fig-pos";
+export const kIpynbProduceSourceNotebook = "produce-source-notebook";
+export const kKeepHidden = "keep-hidden";
diff --git a/src/execute/julia.ts b/src/resources/extension-subtrees/julia-engine/src/julia-engine.ts
similarity index 69%
rename from src/execute/julia.ts
rename to src/resources/extension-subtrees/julia-engine/src/julia-engine.ts
index f8af297f9bd..df2b164dcbe 100644
--- a/src/execute/julia.ts
+++ b/src/resources/extension-subtrees/julia-engine/src/julia-engine.ts
@@ -1,25 +1,32 @@
-import { error, info } from "../deno_ral/log.ts";
-import { join } from "../deno_ral/path.ts";
-import { MappedString, mappedStringFromFile } from "../core/mapped-text.ts";
-import { partitionMarkdown } from "../core/pandoc/pandoc-partition.ts";
-import { readYamlFromMarkdown } from "../core/yaml.ts";
-import {
-  asMappedString,
-  mappedIndexToLineCol,
-  mappedLines,
-} from "../core/lib/mapped-text.ts";
-import { ProjectContext } from "../project/types.ts";
-import {
+/*
+ * julia-engine.ts
+ *
+ * Quarto engine extension for Julia
+ */
+
+// Standard library imports
+import { join, resolve } from "path";
+import { existsSync } from "fs/exists";
+import { encodeBase64 } from "encoding/base64";
+
+// Type imports from Quarto via import map
+import type {
+  Command,
   DependenciesOptions,
+  EngineProjectContext,
   ExecuteOptions,
   ExecuteResult,
-  ExecutionEngine,
+  ExecutionEngineDiscovery,
+  ExecutionEngineInstance,
   ExecutionTarget,
-  kJuliaEngine,
+  JupyterNotebook,
+  MappedString,
   PandocIncludes,
   PostProcessOptions,
-} from "./types.ts";
-import { jupyterAssets, jupyterToMarkdown } from "../core/jupyter/jupyter.ts";
+  QuartoAPI,
+} from "@quarto/types";
+
+// Constants for this engine
 import {
   kExecuteDaemon,
   kExecuteDaemonRestart,
@@ -28,35 +35,29 @@ import {
   kFigFormat,
   kFigPos,
   kIpynbProduceSourceNotebook,
+  kJuliaEngine,
   kKeepHidden,
-} from "../config/constants.ts";
-import {
-  isHtmlCompatible,
-  isIpynbOutput,
-  isLatexOutput,
-  isMarkdownOutput,
-  isPresentationOutput,
-} from "../config/format.ts";
-import { resourcePath } from "../core/resources.ts";
-import { quartoRuntimeDir } from "../core/appdirs.ts";
-import { normalizePath, pathWithForwardSlashes } from "../core/path.ts";
-import { isInteractiveSession } from "../core/platform.ts";
-import { runningInCI } from "../core/ci-info.ts";
-import { sleep } from "../core/async.ts";
-import { JupyterNotebook } from "../core/jupyter/types.ts";
-import { existsSync, safeRemoveSync } from "../deno_ral/fs.ts";
-import { encodeBase64 } from "encoding/base64";
-import {
-  executeResultEngineDependencies,
-  executeResultIncludes,
-} from "./jupyter/jupyter.ts";
-import { isWindows } from "../deno_ral/platform.ts";
-import { Command } from "cliffy/command/mod.ts";
-import {
-  isJupyterPercentScript,
-  markdownFromJupyterPercentScript,
-} from "./jupyter/percent.ts";
-import { resolve } from "path";
+} from "./constants.ts";
+
+// Platform detection
+const isWindows = Deno.build.os === "windows";
+
+// Module-level quarto API reference
+let quarto: QuartoAPI;
+
+// Safe file removal helper
+function safeRemoveSync(file: string, options: Deno.RemoveOptions = {}) {
+  try {
+    Deno.removeSync(file, options);
+  } catch (e) {
+    if (existsSync(file)) {
+      throw e;
+    }
+  }
+}
+
+// Simple async delay helper (equivalent to Deno std's delay)
+const delay = (ms: number) => new Promise((resolve) => setTimeout(resolve, ms));
 
 export interface SourceRange {
   lines: [number, number];
@@ -68,11 +69,11 @@ export interface JuliaExecuteOptions extends ExecuteOptions {
   oneShot: boolean; // if true, the file's worker process is closed before and after running
 }
 
-function isJuliaPercentScript(file: string) {
-  return isJupyterPercentScript(file, [".jl"]);
-}
+export const juliaEngineDiscovery: ExecutionEngineDiscovery = {
+  init: (quartoAPI: QuartoAPI) => {
+    quarto = quartoAPI;
+  },
 
-export const juliaEngine: ExecutionEngine = {
   name: kJuliaEngine,
 
   defaultExt: ".qmd",
@@ -88,33 +89,13 @@ export const juliaEngine: ExecutionEngine = {
   validExtensions: () => [],
 
   claimsFile: (file: string, _ext: string) => {
-    return isJuliaPercentScript(file);
+    return quarto.jupyter.isPercentScript(file, [".jl"]);
   },
 
   claimsLanguage: (language: string) => {
     return language.toLowerCase() === "julia";
   },
 
-  partitionedMarkdown: async (file: string) => {
-    return partitionMarkdown(Deno.readTextFileSync(file));
-  },
-
-  // TODO: ask dragonstyle what to do here
-  executeTargetSkipped: () => false,
-
-  // TODO: just return dependencies from execute and this can do nothing
-  dependencies: (_options: DependenciesOptions) => {
-    const includes: PandocIncludes = {};
-    return Promise.resolve({
-      includes,
-    });
-  },
-
-  // TODO: this can also probably do nothing
-  postprocess: (_options: PostProcessOptions) => {
-    return Promise.resolve();
-  },
-
   canFreeze: true,
 
   generatesFigures: true,
@@ -123,156 +104,216 @@ export const juliaEngine: ExecutionEngine = {
     return [];
   },
 
-  canKeepSource: (_target: ExecutionTarget) => {
-    return true;
+  /**
+   * Populate engine-specific CLI commands
+   */
+  populateCommand: (command) =>
+    populateJuliaEngineCommand(command),
+
+  /**
+   * Check Julia installation
+   */
+  checkInstallation: async () => {
+    await quarto.console.withSpinner(
+      { message: "Checking Julia installation..." },
+      async () => {
+        // Simulate checking Julia installation by waiting 3 seconds
+        await delay(3000);
+      },
+    );
   },
 
-  markdownForFile(file: string): Promise<MappedString> {
-    if (isJuliaPercentScript(file)) {
-      return Promise.resolve(
-        asMappedString(markdownFromJupyterPercentScript(file)),
-      );
-    } else {
-      return Promise.resolve(mappedStringFromFile(file));
-    }
-  },
+  /**
+   * Launch a dynamic execution engine with project context
+   */
+  launch: (context: EngineProjectContext): ExecutionEngineInstance => {
+    return {
+      name: juliaEngineDiscovery.name,
+      canFreeze: juliaEngineDiscovery.canFreeze,
 
-  execute: async (options: ExecuteOptions): Promise<ExecuteResult> => {
-    options.target.source;
+      partitionedMarkdown: (file: string) => {
+        return Promise.resolve(
+          quarto.markdownRegex.partition(Deno.readTextFileSync(file)),
+        );
+      },
 
-    // use daemon by default if we are in an interactive session (terminal
-    // or rstudio) and not running in a CI system.
-    let executeDaemon = options.format.execute[kExecuteDaemon];
-    if (executeDaemon === null || executeDaemon === undefined) {
-      executeDaemon = isInteractiveSession() && !runningInCI();
-    }
+      // TODO: ask dragonstyle what to do here
+      executeTargetSkipped: () => false,
 
-    const execOptions = {
-      ...options,
-      target: {
-        ...options.target,
-        input: normalizePath(options.target.input),
+      // TODO: just return dependencies from execute and this can do nothing
+      dependencies: (_options: DependenciesOptions) => {
+        const includes: PandocIncludes = {};
+        return Promise.resolve({
+          includes,
+        });
       },
-    };
 
-    const juliaExecOptions: JuliaExecuteOptions = {
-      oneShot: !executeDaemon,
-      ...execOptions,
-    };
+      // TODO: this can also probably do nothing
+      postprocess: (_options: PostProcessOptions) => {
+        return Promise.resolve();
+      },
 
-    // TODO: executeDaemon can take a number for timeout of kernels, but
-    // QuartoNotebookRunner currently doesn't support that
-    const nb = await executeJulia(juliaExecOptions);
+      canKeepSource: (_target: ExecutionTarget) => {
+        return true;
+      },
 
-    if (!nb) {
-      error("Execution of notebook returned undefined");
-      return Promise.reject();
-    }
+      markdownForFile(file: string): Promise<MappedString> {
+        if (quarto.jupyter.isPercentScript(file, [".jl"])) {
+          return Promise.resolve(
+            quarto.mappedString.fromString(
+              quarto.jupyter.percentScriptToMarkdown(file),
+            ),
+          );
+        } else {
+          return Promise.resolve(quarto.mappedString.fromFile(file));
+        }
+      },
 
-    // NOTE: the following is all mostly copied from the jupyter kernel file
+      execute: async (options: ExecuteOptions): Promise<ExecuteResult> => {
+        options.target.source;
 
-    // there isn't really a "kernel" as we don't execute via Jupyter
-    // but this seems to be needed later to assign the correct language markers to code cells etc.)
-    nb.metadata.kernelspec = {
-      display_name: "Julia",
-      name: "julia",
-      language: "julia",
-    };
+        // use daemon by default if we are in an interactive session (terminal
+        // or rstudio) and not running in a CI system.
+        let executeDaemon = options.format.execute[kExecuteDaemon];
+        if (executeDaemon === null || executeDaemon === undefined) {
+          executeDaemon = quarto.system.isInteractiveSession() &&
+            !quarto.system.runningInCI();
+        }
 
-    const assets = jupyterAssets(
-      options.target.input,
-      options.format.pandoc.to,
-    );
+        const execOptions = {
+          ...options,
+          target: {
+            ...options.target,
+            input: quarto.path.absolute(options.target.input),
+          },
+        };
 
-    // NOTE: for perforance reasons the 'nb' is mutated in place
-    // by jupyterToMarkdown (we don't want to make a copy of a
-    // potentially very large notebook) so should not be relied
-    // on subseuqent to this call
-
-    const result = await jupyterToMarkdown(
-      nb,
-      {
-        executeOptions: options,
-        language: nb.metadata.kernelspec.language.toLowerCase(),
-        assets,
-        execute: options.format.execute,
-        keepHidden: options.format.render[kKeepHidden],
-        toHtml: isHtmlCompatible(options.format),
-        toLatex: isLatexOutput(options.format.pandoc),
-        toMarkdown: isMarkdownOutput(options.format),
-        toIpynb: isIpynbOutput(options.format.pandoc),
-        toPresentation: isPresentationOutput(options.format.pandoc),
-        figFormat: options.format.execute[kFigFormat],
-        figDpi: options.format.execute[kFigDpi],
-        figPos: options.format.render[kFigPos],
-        // preserveCellMetadata,
-        preserveCodeCellYaml:
-          options.format.render[kIpynbProduceSourceNotebook] === true,
-      },
-    );
+        const juliaExecOptions: JuliaExecuteOptions = {
+          oneShot: !executeDaemon,
+          ...execOptions,
+        };
 
-    // return dependencies as either includes or raw dependencies
-    let includes: PandocIncludes | undefined;
-    let engineDependencies: Record<string, Array<unknown>> | undefined;
-    if (options.dependencies) {
-      includes = executeResultIncludes(options.tempDir, result.dependencies);
-    } else {
-      const dependencies = executeResultEngineDependencies(result.dependencies);
-      if (dependencies) {
-        engineDependencies = {
-          [kJuliaEngine]: dependencies,
+        // TODO: executeDaemon can take a number for timeout of kernels, but
+        // QuartoNotebookRunner currently doesn't support that
+        const nb = await executeJulia(juliaExecOptions);
+
+        if (!nb) {
+          quarto.console.error("Execution of notebook returned undefined");
+          return Promise.reject();
+        }
+
+        // NOTE: the following is all mostly copied from the jupyter kernel file
+
+        // there isn't really a "kernel" as we don't execute via Jupyter
+        // but this seems to be needed later to assign the correct language markers to code cells etc.)
+        nb.metadata.kernelspec = {
+          display_name: "Julia",
+          name: "julia",
+          language: "julia",
         };
-      }
-    }
 
-    // Create markdown from the result
-    const outputs = result.cellOutputs.map((output) => output.markdown);
-    if (result.notebookOutputs) {
-      if (result.notebookOutputs.prefix) {
-        outputs.unshift(result.notebookOutputs.prefix);
-      }
-      if (result.notebookOutputs.suffix) {
-        outputs.push(result.notebookOutputs.suffix);
-      }
-    }
-    const markdown = outputs.join("");
+        const assets = quarto.jupyter.assets(
+          options.target.input,
+          options.format.pandoc.to,
+        );
 
-    // return results
-    return {
-      engine: kJuliaEngine,
-      markdown: markdown,
-      supporting: [join(assets.base_dir, assets.supporting_dir)],
-      filters: [],
-      pandoc: result.pandoc,
-      includes,
-      engineDependencies,
-      preserve: result.htmlPreserve,
-      postProcess: result.htmlPreserve &&
-        (Object.keys(result.htmlPreserve).length > 0),
-    };
-  },
+        // NOTE: for perforance reasons the 'nb' is mutated in place
+        // by jupyterToMarkdown (we don't want to make a copy of a
+        // potentially very large notebook) so should not be relied
+        // on subseuqent to this call
+
+        const result = await quarto.jupyter.toMarkdown(
+          nb,
+          {
+            executeOptions: options,
+            language: nb.metadata.kernelspec.language.toLowerCase(),
+            assets,
+            execute: options.format.execute,
+            keepHidden: options.format.render[kKeepHidden] as boolean | undefined,
+            toHtml: quarto.format.isHtmlCompatible(options.format),
+            toLatex: quarto.format.isLatexOutput(options.format.pandoc),
+            toMarkdown: quarto.format.isMarkdownOutput(options.format),
+            toIpynb: quarto.format.isIpynbOutput(options.format.pandoc),
+            toPresentation: quarto.format.isPresentationOutput(
+              options.format.pandoc,
+            ),
+            figFormat: options.format.execute[kFigFormat] as string | undefined,
+            figDpi: options.format.execute[kFigDpi] as number | undefined,
+            figPos: options.format.render[kFigPos] as string | undefined,
+            // preserveCellMetadata,
+            preserveCodeCellYaml:
+              options.format.render[kIpynbProduceSourceNotebook] === true,
+          },
+        );
 
-  target: async (
-    file: string,
-    _quiet?: boolean,
-    markdown?: MappedString,
-    _project?: ProjectContext,
-  ): Promise<ExecutionTarget | undefined> => {
-    if (markdown === undefined) {
-      markdown = mappedStringFromFile(file);
-    }
-    const target: ExecutionTarget = {
-      source: file,
-      input: file,
-      markdown,
-      metadata: readYamlFromMarkdown(markdown.value),
+        // return dependencies as either includes or raw dependencies
+        let includes: PandocIncludes | undefined;
+        let engineDependencies: Record<string, Array<unknown>> | undefined;
+        if (options.dependencies) {
+          includes = quarto.jupyter.resultIncludes(
+            options.tempDir,
+            result.dependencies,
+          );
+        } else {
+          const dependencies = quarto.jupyter.resultEngineDependencies(
+            result.dependencies,
+          );
+          if (dependencies) {
+            engineDependencies = {
+              [kJuliaEngine]: dependencies,
+            };
+          }
+        }
+
+        // Create markdown from the result
+        const outputs = result.cellOutputs.map((output) => output.markdown);
+        if (result.notebookOutputs) {
+          if (result.notebookOutputs.prefix) {
+            outputs.unshift(result.notebookOutputs.prefix);
+          }
+          if (result.notebookOutputs.suffix) {
+            outputs.push(result.notebookOutputs.suffix);
+          }
+        }
+        const markdown = outputs.join("");
+
+        // return results
+        return {
+          engine: kJuliaEngine,
+          markdown: markdown,
+          supporting: [join(assets.base_dir, assets.supporting_dir)],
+          filters: [],
+          pandoc: result.pandoc,
+          includes,
+          engineDependencies,
+          preserve: result.htmlPreserve,
+          postProcess: result.htmlPreserve &&
+            (Object.keys(result.htmlPreserve).length > 0),
+        };
+      },
+
+      target: (
+        file: string,
+        _quiet?: boolean,
+        markdown?: MappedString,
+      ): Promise<ExecutionTarget | undefined> => {
+        if (markdown === undefined) {
+          markdown = quarto.mappedString.fromFile(file);
+        }
+        const target: ExecutionTarget = {
+          source: file,
+          input: file,
+          markdown,
+          metadata: quarto.markdownRegex.extractYaml(markdown.value),
+        };
+        return Promise.resolve(target);
+      },
     };
-    return Promise.resolve(target);
   },
-
-  populateCommand: populateJuliaEngineCommand,
 };
 
+export default juliaEngineDiscovery;
+
 function juliaCmd() {
   return Deno.env.get("QUARTO_JULIA") ?? "julia";
 }
@@ -292,15 +333,15 @@ async function startOrReuseJuliaServer(
       options,
       `Transport file ${transportFile} doesn't exist`,
     );
-    info("Starting julia control server process. This might take a while...");
+    quarto.console.info("Starting julia control server process. This might take a while...");
 
     let juliaProject = Deno.env.get("QUARTO_JULIA_PROJECT");
 
     if (juliaProject === undefined) {
       await ensureQuartoNotebookRunnerEnvironment(options);
-      juliaProject = juliaRuntimeDir();
+      juliaProject = quarto.path.runtime("julia");
     } else {
-      juliaProject = pathWithForwardSlashes(juliaProject);
+      juliaProject = quarto.path.toForwardSlashes(juliaProject);
       trace(
         options,
         `Custom julia project set via QUARTO_JULIA_PROJECT="${juliaProject}". Checking if QuartoNotebookRunner can be loaded.`,
@@ -349,7 +390,7 @@ async function startOrReuseJuliaServer(
             powershell_argument_list_to_string(
               "--startup-file=no",
               `--project=${juliaProject}`,
-              resourcePath("julia/quartonotebookrunner.jl"),
+              quarto.path.resource("julia", "quartonotebookrunner.jl"),
               transportFile,
               juliaServerLogFile(),
             ),
@@ -373,10 +414,13 @@ async function startOrReuseJuliaServer(
       const command = new Deno.Command(juliaCmd(), {
         args: [
           "--startup-file=no",
-          resourcePath("julia/start_quartonotebookrunner_detached.jl"),
+          quarto.path.resource(
+            "julia",
+            "start_quartonotebookrunner_detached.jl",
+          ),
           juliaCmd(),
           juliaProject,
-          resourcePath("julia/quartonotebookrunner.jl"),
+          quarto.path.resource("julia", "quartonotebookrunner.jl"),
           transportFile,
           juliaServerLogFile(),
         ],
@@ -406,14 +450,18 @@ async function startOrReuseJuliaServer(
 async function ensureQuartoNotebookRunnerEnvironment(
   options: JuliaExecuteOptions,
 ) {
-  const projectTomlTemplate = juliaResourcePath("Project.toml");
-  const projectToml = join(juliaRuntimeDir(), "Project.toml");
+  const runtimeDir = quarto.path.runtime("julia");
+  const projectTomlTemplate = quarto.path.resource(
+    "julia",
+    "Project.toml",
+  );
+  const projectToml = join(runtimeDir, "Project.toml");
   Deno.writeFileSync(projectToml, Deno.readFileSync(projectTomlTemplate));
   const command = new Deno.Command(juliaCmd(), {
     args: [
       "--startup-file=no",
-      `--project=${juliaRuntimeDir()}`,
-      juliaResourcePath("ensure_environment.jl"),
+      `--project=${runtimeDir}`,
+      quarto.path.resource("julia", "ensure_environment.jl"),
     ],
   });
   const proc = command.spawn();
@@ -424,10 +472,6 @@ async function ensureQuartoNotebookRunnerEnvironment(
   return Promise.resolve();
 }
 
-function juliaResourcePath(...parts: string[]) {
-  return join(resourcePath("julia"), ...parts);
-}
-
 interface JuliaTransportFile {
   port: number;
   pid: number;
@@ -444,17 +488,19 @@ async function pollTransportFile(
 
   for (let i = 0; i < 15; i++) {
     if (existsSync(transportFile)) {
-      const transportOptions = readTransportFile(transportFile);
+      const transportOptions = await readTransportFile(transportFile);
       trace(options, "Transport file read successfully.");
       return transportOptions;
     }
     trace(options, "Transport file did not exist, yet.");
-    await sleep(i * 100);
+    await delay(i * 100);
   }
   return Promise.reject();
 }
 
-function readTransportFile(transportFile: string): JuliaTransportFile {
+async function readTransportFile(
+  transportFile: string,
+): Promise<JuliaTransportFile> {
   // As we know the json file ends with \n but we might accidentally read
   // it too quickly once it exists, for example when not the whole string
   // has been written to it, yet, we just repeat reading until the string
@@ -462,7 +508,7 @@ function readTransportFile(transportFile: string): JuliaTransportFile {
   let content = Deno.readTextFileSync(transportFile);
   let i = 0;
   while (i < 20 && !content.endsWith("\n")) {
-    sleep(100);
+    await delay(100);
     content = Deno.readTextFileSync(transportFile);
     i += 1;
   }
@@ -514,18 +560,18 @@ async function getJuliaServerConnection(
     transportOptions = await pollTransportFile(options);
   } catch (err) {
     if (!reused) {
-      info(
+      quarto.console.info(
         "No transport file was found after the timeout. This is the log from the server process:",
       );
-      info("#### BEGIN LOG ####");
+      quarto.console.info("#### BEGIN LOG ####");
       printJuliaServerLog();
-      info("#### END LOG ####");
+      quarto.console.info("#### END LOG ####");
     }
     throw err;
   }
 
   if (!reused) {
-    info("Julia server process started.");
+    quarto.console.info("Julia server process started.");
   }
 
   trace(
@@ -550,7 +596,7 @@ async function getJuliaServerConnection(
       safeRemoveSync(juliaTransportFile());
       return await getJuliaServerConnection(options);
     } else {
-      error(
+      quarto.console.error(
         "Connecting to server failed. A transport file was successfully created by the server process, so something in the server process might be broken.",
       );
       throw e;
@@ -589,8 +635,10 @@ function getConsoleColumns(): number | null {
   }
 }
 
-function buildSourceRanges(markdown: MappedString): Array<SourceRange> {
-  const lines = mappedLines(markdown);
+function buildSourceRanges(
+  markdown: MappedString,
+): Array<SourceRange> {
+  const lines = quarto.mappedString.splitLines(markdown);
   const sourceRanges: Array<SourceRange> = [];
   let currentRange: SourceRange | null = null;
 
@@ -599,8 +647,10 @@ function buildSourceRanges(markdown: MappedString): Array<SourceRange> {
     const mapResult = line.map(0, true);
     if (mapResult) {
       const { originalString } = mapResult;
-      const lineColFunc = mappedIndexToLineCol(originalString);
-      const lineCol = lineColFunc(mapResult.index);
+      const lineCol = quarto.mappedString.indexToLineCol(
+        originalString,
+        mapResult.index,
+      );
       const fileName = originalString.fileName
         ? resolve(originalString.fileName) // resolve to absolute path using cwd
         : undefined;
@@ -688,7 +738,7 @@ async function executeJulia(
         update.source,
         Math.max(0, ncols - firstPartLength),
       );
-      info(`${firstPart}${sigLine}`);
+      quarto.console.info(`${firstPart}${sigLine}`);
     },
   );
 
@@ -896,16 +946,16 @@ async function writeJuliaCommand<T extends ServerCommand["type"]>(
 
 function juliaRuntimeDir(): string {
   try {
-    return quartoRuntimeDir("julia");
+    return quarto.path.runtime("julia");
   } catch (e) {
-    error("Could not create julia runtime directory.");
-    error(
+    quarto.console.error("Could not create julia runtime directory.");
+    quarto.console.error(
       "This is possibly a permission issue in the environment Quarto is running in.",
     );
-    error(
+    quarto.console.error(
       "Please consult the following documentation for more information:",
     );
-    error(
+    quarto.console.error(
       "https://github.com/quarto-dev/quarto-cli/issues/4594#issuecomment-1619177667",
     );
     throw e;
@@ -922,7 +972,7 @@ export function juliaServerLogFile() {
 
 function trace(options: ExecuteOptions, msg: string) {
   if (options.format?.execute[kExecuteDebug] === true) {
-    info("- " + msg, { bold: true });
+    quarto.console.info("- " + msg, { bold: true });
   }
 }
 
@@ -952,7 +1002,7 @@ function populateJuliaEngineCommand(command: Command) {
       "Force closing. This will terminate the worker if it is running.",
       { default: false },
     )
-    .action(async (options, file) => {
+    .action(async (options: { force: boolean }, file: string) => {
       await closeWorker(file, options.force);
     })
     .command("stop", "Stop the server")
@@ -966,10 +1016,10 @@ function populateJuliaEngineCommand(command: Command) {
 async function logStatus() {
   const transportFile = juliaTransportFile();
   if (!existsSync(transportFile)) {
-    info("Julia control server is not running.");
+    quarto.console.info("Julia control server is not running.");
     return;
   }
-  const transportOptions = readTransportFile(transportFile);
+  const transportOptions = await readTransportFile(transportFile);
 
   const conn = await getReadyServerConnection(
     transportOptions,
@@ -989,26 +1039,26 @@ async function logStatus() {
 
     conn.close();
   } else {
-    info(`Found transport file but can't connect to control server.`);
+    quarto.console.info(`Found transport file but can't connect to control server.`);
   }
 }
 
-function killJuliaServer() {
+async function killJuliaServer() {
   const transportFile = juliaTransportFile();
   if (!existsSync(transportFile)) {
-    info("Julia control server is not running.");
+    quarto.console.info("Julia control server is not running.");
     return;
   }
-  const transportOptions = readTransportFile(transportFile);
+  const transportOptions = await readTransportFile(transportFile);
   Deno.kill(transportOptions.pid, "SIGTERM");
-  info("Sent SIGTERM to server process");
+  quarto.console.info("Sent SIGTERM to server process");
 }
 
 function printJuliaServerLog() {
   if (existsSync(juliaServerLogFile())) {
     Deno.stdout.writeSync(Deno.readFileSync(juliaServerLogFile()));
   } else {
-    info("Server log file doesn't exist");
+    quarto.console.info("Server log file doesn't exist");
   }
   return;
 }
@@ -1026,7 +1076,7 @@ async function connectAndWriteJuliaCommandToRunningServer<
   if (!existsSync(transportFile)) {
     throw new Error("Julia control server is not running.");
   }
-  const transportOptions = readTransportFile(transportFile);
+  const transportOptions = await readTransportFile(transportFile);
 
   const conn = await getReadyServerConnection(
     transportOptions,
@@ -1051,12 +1101,12 @@ async function connectAndWriteJuliaCommandToRunningServer<
 }
 
 async function closeWorker(file: string, force: boolean) {
-  const absfile = normalizePath(file);
+  const absfile = quarto.path.absolute(file);
   await connectAndWriteJuliaCommandToRunningServer({
     type: force ? "forceclose" : "close",
     content: { file: absfile },
   });
-  info(`Worker ${force ? "force-" : ""}closed successfully.`);
+  quarto.console.info(`Worker ${force ? "force-" : ""}closed successfully.`);
 }
 
 async function stopServer() {
@@ -1064,5 +1114,5 @@ async function stopServer() {
     type: "stop",
     content: {},
   });
-  info(result.message);
+  quarto.console.info(result.message);
 }
diff --git a/src/resources/schema/definitions.yml b/src/resources/schema/definitions.yml
index 5eafecc819b..3aaa43e278d 100644
--- a/src/resources/schema/definitions.yml
+++ b/src/resources/schema/definitions.yml
@@ -287,6 +287,17 @@
           description: The language that should be used when displaying the commenting interface.
     required: [repo]
 
+- id: external-engine
+  schema:
+    object:
+      closed: true
+      properties:
+        path:
+          path:
+            description: Path to the TypeScript module for the execution engine
+      required: [path]
+    description: An execution engine not pre-loaded in Quarto
+
 - id: document-comments-configuration
   anyOf:
     - enum: [false]
diff --git a/src/resources/schema/extension.yml b/src/resources/schema/extension.yml
index 25c3ec5e50b..0f0ce39ef15 100644
--- a/src/resources/schema/extension.yml
+++ b/src/resources/schema/extension.yml
@@ -25,3 +25,8 @@
           arrayOf: path
         formats:
           schema: object
+        engines:
+          arrayOf:
+            anyOf:
+              - string
+              - ref: external-engine
diff --git a/src/resources/schema/json-schemas.json b/src/resources/schema/json-schemas.json
index 29079c8fc91..ebcf0c70cd2 100644
--- a/src/resources/schema/json-schemas.json
+++ b/src/resources/schema/json-schemas.json
@@ -324,6 +324,15 @@
         }
       }
     },
+    "ExternalEngine": {
+      "object": {
+        "properties": {
+          "path": {
+            "type": "string"
+          }
+        }
+      }
+    },
     "DocumentCommentsConfiguration": {
       "anyOf": [
         {
diff --git a/src/resources/schema/project.yml b/src/resources/schema/project.yml
index c4f8928603c..311a2d360c6 100644
--- a/src/resources/schema/project.yml
+++ b/src/resources/schema/project.yml
@@ -92,5 +92,8 @@
 
 - name: engines
   schema:
-    arrayOf: string
+    arrayOf:
+      anyOf:
+        - string
+        - ref: external-engine
   description: "List execution engines you want to give priority when determining which engine should render a notebook. If two engines have support for a notebook, the one listed earlier will be chosen. Quarto's default order is 'knitr', 'jupyter', 'markdown', 'julia'."
diff --git a/src/resources/types/schema-types.ts b/src/resources/types/schema-types.ts
index e6d9e1a6236..5424a911241 100644
--- a/src/resources/types/schema-types.ts
+++ b/src/resources/types/schema-types.ts
@@ -154,6 +154,10 @@ website:
 ``` */
 };
 
+export type ExternalEngine = {
+  path: string; /* Path to the TypeScript module for the execution engine */
+}; /* An execution engine not pre-loaded in Quarto */
+
 export type DocumentCommentsConfiguration = false | {
   giscus?: GiscusConfiguration;
   hypothesis?: boolean | {
diff --git a/src/resources/types/zod/schema-types.ts b/src/resources/types/zod/schema-types.ts
index 8066c424b40..65eec066ce1 100644
--- a/src/resources/types/zod/schema-types.ts
+++ b/src/resources/types/zod/schema-types.ts
@@ -135,6 +135,9 @@ export const ZodGiscusConfiguration = z.object({
   language: z.string(),
 }).strict().partial().required({ repo: true });
 
+export const ZodExternalEngine = z.object({ path: z.string() }).strict()
+  .partial().required({ path: true });
+
 export const ZodDocumentCommentsConfiguration = z.union([
   z.literal(false),
   z.object({
@@ -1838,6 +1841,8 @@ export type GiscusThemes = z.infer<typeof ZodGiscusThemes>;
 
 export type GiscusConfiguration = z.infer<typeof ZodGiscusConfiguration>;
 
+export type ExternalEngine = z.infer<typeof ZodExternalEngine>;
+
 export type DocumentCommentsConfiguration = z.infer<
   typeof ZodDocumentCommentsConfiguration
 >;
@@ -2072,6 +2077,7 @@ export const Zod = {
   NavigationItemObject: ZodNavigationItemObject,
   GiscusThemes: ZodGiscusThemes,
   GiscusConfiguration: ZodGiscusConfiguration,
+  ExternalEngine: ZodExternalEngine,
   DocumentCommentsConfiguration: ZodDocumentCommentsConfiguration,
   SocialMetadata: ZodSocialMetadata,
   PageFooterRegion: ZodPageFooterRegion,
diff --git a/tests/docs/call/engine/julia/_quarto.yml b/tests/docs/call/engine/julia/_quarto.yml
new file mode 100644
index 00000000000..5d28962fff4
--- /dev/null
+++ b/tests/docs/call/engine/julia/_quarto.yml
@@ -0,0 +1,3 @@
+project:
+  type: default
+
diff --git a/tests/docs/project/book/.gitignore b/tests/docs/project/book/.gitignore
index f2a47e616ed..a3071ae5755 100644
--- a/tests/docs/project/book/.gitignore
+++ b/tests/docs/project/book/.gitignore
@@ -1,2 +1,4 @@
 /.quarto/
 *_cache/
+
+**/*.quarto_ipynb
diff --git a/tests/smoke/build-ts-extension/README.md b/tests/smoke/build-ts-extension/README.md
new file mode 100644
index 00000000000..56f417497e9
--- /dev/null
+++ b/tests/smoke/build-ts-extension/README.md
@@ -0,0 +1,44 @@
+# Build TypeScript Extension Test
+
+This is a minimal test extension for the `quarto dev-call build-ts-extension` command.
+
+## Structure
+
+- `src/test-engine.ts` - TypeScript source implementing ExecutionEngineDiscovery
+- `deno.json` - Configuration with quartoExtension options and inline imports
+- `_extensions/test-engine/` - Output directory for built extension
+- `_extensions/test-engine/_extension.yml` - Extension metadata
+
+## Testing
+
+Prerequisites:
+```bash
+# Build quarto-types first
+cd packages/quarto-types
+npm run build
+cd ../..
+```
+
+To build the test extension:
+```bash
+cd tests/smoke/build-ts-extension
+quarto dev-call build-ts-extension
+```
+
+To type-check only:
+```bash
+quarto dev-call build-ts-extension --check
+```
+
+## Expected Output
+
+After building, you should see:
+- `_extensions/test-engine/test-engine.js` - Bundled JavaScript file
+- Type checking passes with no errors
+- Success message indicating build completion
+
+## Notes
+
+- This test uses inline `imports` in deno.json pointing directly to `packages/quarto-types/dist/index.d.ts`
+- In a real extension project, you would typically use the default config from Quarto's `share/extension-build/` directory
+- The default config is available at `src/resources/extension-build/` in dev mode
diff --git a/tests/smoke/build-ts-extension/_extensions/test-engine/_extension.yml b/tests/smoke/build-ts-extension/_extensions/test-engine/_extension.yml
new file mode 100644
index 00000000000..4e73897fe10
--- /dev/null
+++ b/tests/smoke/build-ts-extension/_extensions/test-engine/_extension.yml
@@ -0,0 +1,7 @@
+title: Test Engine
+author: Quarto Dev Team
+version: 1.0.0
+quarto-required: ">=1.6.0"
+contributes:
+  engines:
+    - test-engine.js
diff --git a/tests/smoke/build-ts-extension/build-ts-extension.test.ts b/tests/smoke/build-ts-extension/build-ts-extension.test.ts
new file mode 100644
index 00000000000..46e0f713acb
--- /dev/null
+++ b/tests/smoke/build-ts-extension/build-ts-extension.test.ts
@@ -0,0 +1,49 @@
+import { noErrorsOrWarnings } from "../../verify.ts";
+import { testQuartoCmd, Verify } from "../../test.ts";
+import { assert } from "testing/asserts";
+import { existsSync } from "../../../src/deno_ral/fs.ts";
+
+const verifyBundleCreated: Verify = {
+  name: "Verify bundled JS file was created",
+  verify: async () => {
+    const bundlePath = "_extensions/test-engine/test-engine.js";
+    assert(
+      existsSync(bundlePath),
+      `Expected bundled file not found: ${bundlePath}`,
+    );
+  },
+};
+
+const verifyImportBundled: Verify = {
+  name: "Verify import from import map was bundled",
+  verify: async () => {
+    const bundlePath = "_extensions/test-engine/test-engine.js";
+    const content = Deno.readTextFileSync(bundlePath);
+
+    // Check that the file is substantial (contains bundled dependencies, not just source)
+    assert(
+      content.length > 1000,
+      `Bundle file seems too small (${content.length} bytes), dependencies may not be bundled`,
+    );
+
+    // Check that extname function declaration is in the bundle (lightweight check)
+    assert(
+      content.includes("function extname"),
+      "Bundle does not contain 'function extname' - import may not have been bundled",
+    );
+  },
+};
+
+testQuartoCmd(
+  "call",
+  ["build-ts-extension"],
+  [
+    noErrorsOrWarnings,
+    verifyBundleCreated,
+    verifyImportBundled,
+  ],
+  {
+    cwd: () => "smoke/build-ts-extension",
+  },
+  "build-ts-extension creates bundled engine",
+);
diff --git a/tests/smoke/build-ts-extension/src/test-engine.ts b/tests/smoke/build-ts-extension/src/test-engine.ts
new file mode 100644
index 00000000000..b25aa736007
--- /dev/null
+++ b/tests/smoke/build-ts-extension/src/test-engine.ts
@@ -0,0 +1,101 @@
+import type {
+  ExecutionEngineDiscovery,
+  ExecutionEngineInstance,
+  QuartoAPI,
+  EngineProjectContext,
+  MappedString,
+  ExecutionTarget,
+  ExecuteOptions,
+  ExecuteResult,
+  DependenciesOptions,
+  DependenciesResult,
+  PostProcessOptions,
+  PartitionedMarkdown,
+} from "@quarto/types";
+import { extname } from "path";
+
+let quarto: QuartoAPI;
+
+const testEngineDiscovery: ExecutionEngineDiscovery = {
+  init: (quartoAPI: QuartoAPI) => {
+    quarto = quartoAPI;
+  },
+
+  name: "test",
+
+  defaultExt: ".qmd",
+
+  defaultYaml: () => ["engine: test"],
+
+  defaultContent: () => ["# Test Engine Document", "", "This is a test."],
+
+  validExtensions: () => [".qmd"],
+
+  claimsFile: (_file: string, _ext: string) => false,
+
+  claimsLanguage: (language: string) => language === "test",
+
+  canFreeze: false,
+
+  generatesFigures: false,
+
+  launch: (context: EngineProjectContext): ExecutionEngineInstance => {
+    return {
+      name: "test",
+      canFreeze: false,
+
+      markdownForFile: async (file: string): Promise<MappedString> => {
+        return quarto.mappedString.fromFile(file);
+      },
+
+      target: async (
+        file: string,
+        _quiet?: boolean,
+        markdown?: MappedString,
+      ): Promise<ExecutionTarget | undefined> => {
+        if (!markdown) {
+          markdown = await quarto.mappedString.fromFile(file);
+        }
+        const metadata = quarto.markdownRegex.extractYaml(markdown.value);
+        return {
+          source: file,
+          input: file,
+          markdown,
+          metadata,
+        };
+      },
+
+      partitionedMarkdown: async (
+        file: string,
+      ): Promise<PartitionedMarkdown> => {
+        const markdown = await quarto.mappedString.fromFile(file);
+        return quarto.markdownRegex.partition(markdown.value);
+      },
+
+      execute: async (options: ExecuteOptions): Promise<ExecuteResult> => {
+        // Simple passthrough - no actual execution
+        // Use extname to ensure it gets bundled
+        const _ext = extname(options.target.input);
+        return {
+          markdown: options.target.markdown.value,
+          supporting: [],
+          filters: [],
+        };
+      },
+
+      dependencies: async (
+        _options: DependenciesOptions,
+      ): Promise<DependenciesResult> => {
+        return {
+          includes: {},
+        };
+      },
+
+      postprocess: async (_options: PostProcessOptions): Promise<void> => {
+        // No post-processing needed
+      },
+    };
+  },
+};
+
+export default testEngineDiscovery;
diff --git a/tests/smoke/call/engine/julia/julia.test.ts b/tests/smoke/call/engine/julia/julia.test.ts
index 330b5f9e23b..351a2061e72 100644
--- a/tests/smoke/call/engine/julia/julia.test.ts
+++ b/tests/smoke/call/engine/julia/julia.test.ts
@@ -1,11 +1,13 @@
 import { assert, assertStringIncludes } from "testing/asserts";
 import { docs, quartoDevCmd } from "../../../../utils.ts";
 import { existsSync } from "fs/exists";
-import { juliaServerLogFile, juliaTransportFile } from "../../../../../src/execute/julia.ts";
 import { sleep } from "../../../../../src/core/wait.ts";
+import { quartoRuntimeDir } from "../../../../../src/core/appdirs.ts";
+import { join } from "../../../../../src/deno_ral/path.ts";
 
-const sleepQmd = docs("call/engine/julia/sleep.qmd");
-assert(existsSync(sleepQmd));
+const juliaTestDir = docs("call/engine/julia");
+const sleepQmd = "sleep.qmd";
+assert(existsSync(docs("call/engine/julia/sleep.qmd")));
 
 function assertSuccess(output: Deno.CommandOutput) {
   if (!output.success) {
@@ -23,144 +25,174 @@ function assertStderrIncludes(output: Deno.CommandOutput, str: string) {
   assertStringIncludes(new TextDecoder().decode(output.stderr), str);
 }
 
-// make sure we don't have a server process running by sending a kill command
-// and then also try to remove the transport file in case one still exists
-const killcmd = new Deno.Command(
-  quartoDevCmd(),
-  {args: ["call", "engine", "julia", "kill"]}
-).outputSync();
-assertSuccess(killcmd);
-try {
-  await Deno.remove(juliaTransportFile());
-} catch {
-}
-
-Deno.test("kill without server running", () => {
-  const output = new Deno.Command(
+Deno.test("julia engine", async (t) => {
+  // Setup: Clean up any leftover server state before running tests
+  const killcmd = new Deno.Command(
     quartoDevCmd(),
-    {args: ["call", "engine", "julia", "kill"]}
+    { args: ["call", "engine", "julia", "kill"], cwd: juliaTestDir },
   ).outputSync();
-  assertSuccess(output);
-  assertStderrIncludes(output, "Julia control server is not running.");
-});
-
-Deno.test("status without server running", () => {
-  const output = new Deno.Command(
-    quartoDevCmd(),
-    {args: ["call", "engine", "julia", "status"]}
-  ).outputSync();
-  assertSuccess(output);
-  assertStderrIncludes(output, "Julia control server is not running.");
-});
+  assertSuccess(killcmd);
 
-try {
-  await Deno.remove(juliaServerLogFile());
-} catch {
-}
+  const transportFile = join(quartoRuntimeDir("julia"), "julia_transport.txt");
+  const logFile = join(quartoRuntimeDir("julia"), "julia_server_log.txt");
 
-Deno.test("log file doesn't exist", () => {
-  const log_output = new Deno.Command(
-    quartoDevCmd(),
-    {args: ["call", "engine", "julia", "log"]}
-  ).outputSync();
-  assertSuccess(log_output);
-  assertStderrIncludes(log_output, "Server log file doesn't exist");
-});
-
-Deno.test("status with server and worker running", () => {
-  const render_output = new Deno.Command(
-    quartoDevCmd(),
-    {args: ["render", sleepQmd, "-P", "sleep_duration:0", "--execute-daemon", "60"]}
-  ).outputSync();
-  assertSuccess(render_output);
-
-  const status_output = new Deno.Command(
-    quartoDevCmd(),
-    {args: ["call", "engine", "julia", "status"]}
-  ).outputSync();
-  assertSuccess(status_output);
-  assertStdoutIncludes(status_output, "workers active: 1");
-});
-
-Deno.test("closing an idling worker", () => {
-  const close_output = new Deno.Command(
-    quartoDevCmd(),
-    {args: ["call", "engine", "julia", "close", sleepQmd]}
-  ).outputSync();
-  assertSuccess(close_output);
-  assertStderrIncludes(close_output, "Worker closed successfully");
-
-  const status_output = new Deno.Command(
-    quartoDevCmd(),
-    {args: ["call", "engine", "julia", "status"]}
-  ).outputSync();
-  assertSuccess(status_output);
-  assertStdoutIncludes(status_output, "workers active: 0");
-});
-
-Deno.test("force-closing a running worker", async () => {
-  // spawn a long-running command
-  const render_cmd = new Deno.Command(
-    quartoDevCmd(),
-    {args: ["render", sleepQmd, "-P", "sleep_duration:30"]}
-  ).output();
-
-  await sleep(3000);
-
-  const close_output = new Deno.Command(
-    quartoDevCmd(),
-    {args: ["call", "engine", "julia", "close", sleepQmd]}
-  ).outputSync();
-  assertStderrIncludes(close_output, "worker is busy");
-
-  const status_output = new Deno.Command(
-    quartoDevCmd(),
-    {args: ["call", "engine", "julia", "status"]}
-  ).outputSync();
-  assertSuccess(status_output);
-  assertStdoutIncludes(status_output, "workers active: 1");
-
-  const force_close_output = new Deno.Command(
-    quartoDevCmd(),
-    {args: ["call", "engine", "julia", "close", "--force", sleepQmd]}
-  ).outputSync();
-  assertSuccess(force_close_output);
-  assertStderrIncludes(force_close_output, "Worker force-closed successfully");
-
-  const status_output_2 = new Deno.Command(
-    quartoDevCmd(),
-    {args: ["call", "engine", "julia", "status"]}
-  ).outputSync();
-  assertSuccess(status_output_2);
-  assertStdoutIncludes(status_output_2, "workers active: 0");
-
-  const render_output = await render_cmd;
-  assertStderrIncludes(render_output, "File was force-closed during run")
-});
-
-Deno.test("log exists", () => {
-  const log_output = new Deno.Command(
-    quartoDevCmd(),
-    {args: ["call", "engine", "julia", "log"]}
-  ).outputSync();
-  assertSuccess(log_output);
-  assertStdoutIncludes(log_output, "Log started at");
-});
-
-Deno.test("stop the idling server", async () => {
-  const stop_output = new Deno.Command(
-    quartoDevCmd(),
-    {args: ["call", "engine", "julia", "stop"]}
-  ).outputSync();
-  assertSuccess(stop_output);
-  assertStderrIncludes(stop_output, "Server stopped");
+  try {
+    await Deno.remove(transportFile);
+  } catch {
+    // File might not exist, that's okay
+  }
 
-  await sleep(2000); // allow a little bit of time for the server to stop and the log message to be written
+  try {
+    await Deno.remove(logFile);
+  } catch {
+    // File might not exist, that's okay
+  }
 
-  const log_output = new Deno.Command(
-    quartoDevCmd(),
-    {args: ["call", "engine", "julia", "log"]}
-  ).outputSync();
-  assertSuccess(log_output);
-  assertStdoutIncludes(log_output, "Server stopped");
+  // Now run all the actual tests as steps
+  await t.step("kill without server running", () => {
+    const output = new Deno.Command(
+      quartoDevCmd(),
+      { args: ["call", "engine", "julia", "kill"], cwd: juliaTestDir },
+    ).outputSync();
+    assertSuccess(output);
+    assertStderrIncludes(output, "Julia control server is not running.");
+  });
+
+  await t.step("status without server running", () => {
+    const output = new Deno.Command(
+      quartoDevCmd(),
+      { args: ["call", "engine", "julia", "status"], cwd: juliaTestDir },
+    ).outputSync();
+    assertSuccess(output);
+    assertStderrIncludes(output, "Julia control server is not running.");
+  });
+
+  await t.step("log file doesn't exist", () => {
+    const log_output = new Deno.Command(
+      quartoDevCmd(),
+      { args: ["call", "engine", "julia", "log"], cwd: juliaTestDir },
+    ).outputSync();
+    assertSuccess(log_output);
+    assertStderrIncludes(log_output, "Server log file doesn't exist");
+  });
+
+  await t.step("status with server and worker running", () => {
+    const render_output = new Deno.Command(
+      quartoDevCmd(),
+      {
+        args: [
+          "render",
+          sleepQmd,
+          "-P",
+          "sleep_duration:0",
+          "--execute-daemon",
+          "60",
+        ],
+        cwd: juliaTestDir,
+      },
+    ).outputSync();
+    assertSuccess(render_output);
+
+    const status_output = new Deno.Command(
+      quartoDevCmd(),
+      { args: ["call", "engine", "julia", "status"], cwd: juliaTestDir },
+    ).outputSync();
+    assertSuccess(status_output);
+    assertStdoutIncludes(status_output, "workers active: 1");
+  });
+
+  await t.step("closing an idling worker", () => {
+    const close_output = new Deno.Command(
+      quartoDevCmd(),
+      {
+        args: ["call", "engine", "julia", "close", sleepQmd],
+        cwd: juliaTestDir,
+      },
+    ).outputSync();
+    assertSuccess(close_output);
+    assertStderrIncludes(close_output, "Worker closed successfully");
+
+    const status_output = new Deno.Command(
+      quartoDevCmd(),
+      { args: ["call", "engine", "julia", "status"], cwd: juliaTestDir },
+    ).outputSync();
+    assertSuccess(status_output);
+    assertStdoutIncludes(status_output, "workers active: 0");
+  });
+
+  await t.step("force-closing a running worker", async () => {
+    // spawn a long-running command
+    const render_cmd = new Deno.Command(
+      quartoDevCmd(),
+      {
+        args: ["render", sleepQmd, "-P", "sleep_duration:30"],
+        cwd: juliaTestDir,
+      },
+    ).output();
+
+    await sleep(3000);
+
+    const close_output = new Deno.Command(
+      quartoDevCmd(),
+      {
+        args: ["call", "engine", "julia", "close", sleepQmd],
+        cwd: juliaTestDir,
+      },
+    ).outputSync();
+    assertStderrIncludes(close_output, "worker is busy");
+
+    const status_output = new Deno.Command(
+      quartoDevCmd(),
+      { args: ["call", "engine", "julia", "status"], cwd: juliaTestDir },
+    ).outputSync();
+    assertSuccess(status_output);
+    assertStdoutIncludes(status_output, "workers active: 1");
+
+    const force_close_output = new Deno.Command(
+      quartoDevCmd(),
+      {
+        args: ["call", "engine", "julia", "close", "--force", sleepQmd],
+        cwd: juliaTestDir,
+      },
+    ).outputSync();
+    assertSuccess(force_close_output);
+    assertStderrIncludes(force_close_output, "Worker force-closed successfully");
+
+    const status_output_2 = new Deno.Command(
+      quartoDevCmd(),
+      { args: ["call", "engine", "julia", "status"], cwd: juliaTestDir },
+    ).outputSync();
+    assertSuccess(status_output_2);
+    assertStdoutIncludes(status_output_2, "workers active: 0");
+
+    const render_output = await render_cmd;
+    assertStderrIncludes(render_output, "File was force-closed during run");
+  });
+
+  await t.step("log exists", () => {
+    const log_output = new Deno.Command(
+      quartoDevCmd(),
+      { args: ["call", "engine", "julia", "log"], cwd: juliaTestDir },
+    ).outputSync();
+    assertSuccess(log_output);
+    assertStdoutIncludes(log_output, "Log started at");
+  });
+
+  await t.step("stop the idling server", async () => {
+    const stop_output = new Deno.Command(
+      quartoDevCmd(),
+      { args: ["call", "engine", "julia", "stop"], cwd: juliaTestDir },
+    ).outputSync();
+    assertSuccess(stop_output);
+    assertStderrIncludes(stop_output, "Server stopped");
+
+    await sleep(2000); // allow a little bit of time for the server to stop and the log message to be written
+
+    const log_output = new Deno.Command(
+      quartoDevCmd(),
+      { args: ["call", "engine", "julia", "log"], cwd: juliaTestDir },
+    ).outputSync();
+    assertSuccess(log_output);
+    assertStdoutIncludes(log_output, "Server stopped");
+  });
 });
diff --git a/tests/smoke/create/create.test.ts b/tests/smoke/create/create.test.ts
index 8d898d24208..56f644871d2 100644
--- a/tests/smoke/create/create.test.ts
+++ b/tests/smoke/create/create.test.ts
@@ -22,6 +22,7 @@ const kCreateTypes: Record<string, string[]> = {
     "format:pdf",
     "format:docx",
     "format:revealjs",
+    "engine",
   ],
 };
 
@@ -69,6 +70,19 @@ for (const type of Object.keys(kCreateTypes)) {
           `Artifact ${type} ${template} failed to produce any files to open.`,
         );
 
+        // Build engine extensions before rendering
+        if (template === "engine") {
+          const buildCmd = [quartoDevCmd(), "call", "build-ts-extension"];
+          const buildProcess = await execProcess({
+            cmd: buildCmd[0],
+            args: buildCmd.slice(1),
+            cwd: path,
+            stdout: "piped",
+            stderr: "piped",
+          });
+          assert(buildProcess.success, buildProcess.stderr);
+        }
+
         for (const file of openfiles) {
           if (file.endsWith(".qmd")) {
             // provide a step name and function
diff --git a/tests/smoke/inspect/inspect-extensions.test.ts b/tests/smoke/inspect/inspect-extensions.test.ts
index 82084bfe671..bbf4820e118 100644
--- a/tests/smoke/inspect/inspect-extensions.test.ts
+++ b/tests/smoke/inspect/inspect-extensions.test.ts
@@ -25,8 +25,9 @@ import { assert, assertEquals } from "testing/asserts";
         verify: async (outputs: ExecuteOutput[]) => {
           assert(existsSync(output));
           const json = JSON.parse(Deno.readTextFileSync(output));
-          assert(json.extensions.length === 1);
-          assertEquals(json.extensions[0].title, "Auto Dark Mode");
+          assert(json.extensions.length === 2);
+          // 0 is julia-engine
+          assertEquals(json.extensions[1].title, "Auto Dark Mode");
         }
       }
     ],
diff --git a/tools/bundle-bug-finder/_prelude.js b/tools/bundle-bug-finder/_prelude.js
index 6098fe81da5..0fca50b99e0 100644
--- a/tools/bundle-bug-finder/_prelude.js
+++ b/tools/bundle-bug-finder/_prelude.js
@@ -5,6 +5,12 @@
 // tracking on https://github.com/b-fuze/deno-dom/issues/151
 /*global i, l, result */
 
+// esbuild bundler bug: when using dynamic imports to break async initialization chains,
+// esbuild fails to properly hoist variable declarations from conditional blocks in some
+// modules (e.g., util module's b, w, v2 variables declared inside if blocks).
+// The variables exist at runtime but eslint can't see their declarations.
+/*global b, w, v2 */
+
 /* deno-dom browser-only codepath: */
 /*global document, Element, Document, DocumentFragment */