Ci/GitHub actions

.coveragerc

@@ -0,0 +1,5 @@
+[run]
+omit = */tests/*
+
+[report]
+omit = */tests/*

.github/workflows/testsuite.yaml

@@ -0,0 +1,74 @@
+name: Test Suite
+on: [push, pull_request]
+
+
+jobs:
+  linter:
+    name: Linter
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        # Adding -l {0} helps ensure conda can be found properly.
+        shell: bash -l {0}
+    env:
+      PYTHON: 3.8
+      ENV_NAME: linting
+    steps:
+      - uses: actions/checkout@master
+        with:
+          fetch-depth: 1
+
+      - name: Setup Miniconda
+        uses: conda-incubator/setup-miniconda@v2.0.0
+        with:
+          auto-update-conda: true
+          miniconda-version: "latest"
+          python-version: ${{ env.PYTHON }}
+          environment-file: ci/${{ env.ENV_NAME }}.yaml
+          activate-environment: ${{ env.ENV_NAME }}
+
+      - name: Linting
+        run: |
+          pre-commit install
+          pre-commit run -a
+
+  tests:
+    name: Test Suite
+    runs-on: ${{ matrix.os }}
+    defaults:
+      run:
+        shell: bash -l {0}
+    env:
+      ENV_NAME: testing
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        python-version: [3.6, 3.7, 3.8]
+    steps:
+      - uses: actions/checkout@master
+        with:
+          fetch-depth: 1
+
+      - name: Setup Miniconda
+        uses: conda-incubator/setup-miniconda@v2.0.0
+        with:
+          auto-update-conda: true
+          python-version: ${{ matrix.python-version }}
+          environment-file: ci/${{ env.ENV_NAME }}.yaml
+          activate-environment: ${{ env.ENV_NAME }}
+
+      - name: Conda Info
+        run: |
+          conda info
+          python --version
+
+      - name: Run Tests
+        run: |
+          pip install .[test]
+          python -m pytest --cov=py21cmsense --cov-config=.coveragerc --cov-report xml:./coverage.xml --junitxml=test-reports/xunit.xml
+
+      - uses: codecov/codecov-action@v1.5.2
+        if: success()
+        with:
+          file: ./coverage.xml #optional

.gitignore

@@ -1,7 +1,7 @@
 
 \.idea/
 
-py21cmsense/__pycache__/
+__pycache__/
 
 py21cmsense\.egg-info/
 
@@ -13,3 +13,9 @@ pip-wheel-metadata/
 *.pkl
 *.npz
 *.png
+.coverage
+.coverage.*
+.cache
+coverage.xml
+*,cover
+.pytest_cache

CONTRIBUTING.rst

@@ -37,16 +37,19 @@ otherwise your changes will likely fail continuous integration.
 
     git clone git@github.com:your_name_here/21cmSense.git
 
-2. Create a branch for local development::
+2. Install `pre-commit <https://pre-commit.com/>`_ to do style checking automatically::
+
+    pre-commit install
+
+3. Create a branch for local development::
 
     git checkout -b name-of-your-bugfix-or-feature
 
-3. When you're done making changes, run all the checks, doc builder and spell checker
-   with `tox <http://tox.readthedocs.io/en/latest/install.html>`_ one command::
+4. When you're done making changes, run all the checks with `pytest <https://docs.pytest.org/en/latest/>`_::
 
-    tox
+    pytest
 
-4. Commit your changes and push your branch to GitHub::
+5. Commit your changes and push your branch to GitHub::
 
     git add .
     git commit -m "Your detailed description of your changes."
@@ -59,18 +62,3 @@ Pull Request Guidelines
 
 If you need some code review or feedback while you're developing the code just make the
 pull request. You can mark the PR as a draft until you are happy for it to be merged.
-
-Tips
-----
-
-To run a subset of tests::
-
-    tox -e envname -- py.test -k test_myfeature
-
-To run all the test environments in *parallel* with tox>=3.7::
-
-    tox -p
-
-For older versions of tox<3.7 (you need to ``pip install detox``)::
-
-    detox

ci/linting.yaml

@@ -0,0 +1,6 @@
+name: linting
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - pre-commit

ci/testing.yaml

@@ -0,0 +1,21 @@
+name: testing
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - astropy
+  - cached_property
+  - click
+  - future
+  - numpy
+  - pip
+  - pre-commit
+  - pyyaml
+  - pyuvdata
+  - pytest
+  - pytest-cov
+  - scipy
+  - tqdm
+  - matplotlib
+  - pip:
+    - methodtools

setup.py

@@ -23,10 +23,12 @@ def find_version(*file_paths):
 
 
 docs_req = ["sphinx>=1.3", "sphinx-rtd-theme", "numpydoc", "nbsphinx", "ipython"]
-dev_rq = docs_req + ["pre-commit", "pytest", "matplotlib", "tox"]
+test_req = ["pre-commit", "pytest", "matplotlib"]
+dev_rq = docs_req + test_req
 
 setup_args = {
     "name": "py21cmsense",
+    "data_files": [("", ["LICENSE.rst"]), ("", ["CHANGELOG.rst"])],
     "version": find_version("py21cmsense", "__init__.py"),
     "license": read("LICENSE.rst"),
     "long_description": "%s\n%s"
@@ -66,10 +68,7 @@ def find_version(*file_paths):
         "pyuvdata",
         "cached_property",
     ],
-    "extras_require": {
-        "docs": ["sphinx>=1.3", "sphinx-rtd-theme", "numpydoc", "nbsphinx", "ipython"],
-        "dev": dev_rq,
-    },
+    "extras_require": {"docs": docs_req, "test": test_req, "dev": dev_rq},
     "package_data": {"py21cmsense": ["data/*"]},
     "entry_points": {"console_scripts": ["sense = py21cmsense.cli:main"]},
 }