tibia_lmm.log.txt

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## GEMMA Version = 0.96
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## Command Line Input = ./gemma -p pheno.txt -c covar.txt -a map.txt -g geno.txt -notsnp -k tibia.cXX.txt -lmm 2 -outdir . -o tibia-lmm 
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## Date = Mon Apr 22 17:14:26 2019
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## Summary Statistics:
## number of total individuals = 1934
## number of analyzed individuals = 1712
## number of covariates = 3
## number of phenotypes = 1
## number of total SNPs = 353697
## number of analyzed SNPs = 353697
## REMLE log-likelihood in the null model = -800.334
## MLE log-likelihood in the null model = -800.074
## pve estimate in the null model = 0.344136
## se(pve) in the null model = 0.0360976
## vg estimate in the null model = 0.227194
## ve estimate in the null model = 0.109511
## beta estimate in the null model =   17.7127  0.0384163  0.0314971
## se(beta) =   0.0633294  0.0219584  0.00181497
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## Computation Time:
## total computation time = 48.7875 min 
## computation time break down: 
##      time on eigen-decomposition = 0.0308333 min 
##      time on calculating UtX = 3.36333 min 
##      time on optimization = 40.954 min 
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