From a7ff6ae011dda9940769d94a2132445878869a4c Mon Sep 17 00:00:00 2001 From: Peter Weber Date: Sat, 18 Feb 2023 22:10:24 +0100 Subject: [PATCH] es: task cli * Adds `es task` cli commands. * Adds `es index` `move` and `info` commands. * Adds dependencies for Flask 2 Co-Authored-by: Peter Weber --- docs/conf.py | 2 +- poetry.lock | 1366 +++++++++++++++----------- pyproject.toml | 28 +- rero_invenio_base/cli/es/__init__.py | 2 + rero_invenio_base/cli/es/index.py | 139 ++- rero_invenio_base/cli/es/task.py | 131 +++ run-tests.sh | 18 +- 7 files changed, 1065 insertions(+), 621 deletions(-) create mode 100644 rero_invenio_base/cli/es/task.py diff --git a/docs/conf.py b/docs/conf.py index 5832ff4..46ace9f 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -79,7 +79,7 @@ # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. -language = None +language = 'fr' # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: diff --git a/poetry.lock b/poetry.lock index 526882f..7b5313a 100644 --- a/poetry.lock +++ b/poetry.lock @@ -8,7 +8,7 @@ python-versions = ">=3.6" [[package]] name = "alembic" -version = "1.9.2" +version = "1.10.4" description = "A database migration tool for SQLAlchemy." category = "main" optional = false @@ -19,6 +19,7 @@ importlib-metadata = {version = "*", markers = "python_version < \"3.9\""} importlib-resources = {version = "*", markers = "python_version < \"3.9\""} Mako = "*" SQLAlchemy = ">=1.3.0" +typing-extensions = ">=4" [package.extras] tz = ["python-dateutil"] @@ -75,51 +76,43 @@ category = "main" optional = false python-versions = ">=3.6" -[[package]] -name = "atomicwrites" -version = "1.4.1" -description = "Atomic file writes." -category = "dev" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" - [[package]] name = "attrs" -version = "22.2.0" +version = "23.1.0" description = "Classes Without Boilerplate" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.extras] -cov = ["attrs[tests]", "coverage-enable-subprocess", "coverage[toml] (>=5.3)"] -dev = ["attrs[docs,tests]"] -docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope.interface"] -tests = ["attrs[tests-no-zope]", "zope.interface"] -tests-no-zope = ["cloudpickle", "cloudpickle", "hypothesis", "hypothesis", "mypy (>=0.971,<0.990)", "mypy (>=0.971,<0.990)", "pympler", "pympler", "pytest (>=4.3.0)", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-mypy-plugins", "pytest-xdist[psutil]", "pytest-xdist[psutil]"] +cov = ["attrs[tests]", "coverage[toml] (>=5.3)"] +dev = ["attrs[docs,tests]", "pre-commit"] +docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope-interface"] +tests = ["attrs[tests-no-zope]", "zope-interface"] +tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"] [[package]] name = "autoflake" -version = "1.7.8" +version = "2.1.1" description = "Removes unused imports and unused variables" category = "dev" optional = false python-versions = ">=3.7" [package.dependencies] -pyflakes = ">=1.1.0,<3" +pyflakes = ">=3.0.0" tomli = {version = ">=2.0.1", markers = "python_version < \"3.11\""} [[package]] name = "babel" -version = "2.11.0" +version = "2.12.1" description = "Internationalization utilities" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] -pytz = ">=2015.7" +pytz = {version = ">=2015.7", markers = "python_version < \"3.9\""} [[package]] name = "backcall" @@ -155,7 +148,7 @@ python-versions = "*" [[package]] name = "bleach" -version = "5.0.1" +version = "6.0.0" description = "An easy safelist-based HTML-sanitizing tool." category = "main" optional = false @@ -167,15 +160,14 @@ webencodings = "*" [package.extras] css = ["tinycss2 (>=1.1.0,<1.2)"] -dev = ["Sphinx (==4.3.2)", "black (==22.3.0)", "build (==0.8.0)", "flake8 (==4.0.1)", "hashin (==0.17.0)", "mypy (==0.961)", "pip-tools (==6.6.2)", "pytest (==7.1.2)", "tox (==3.25.0)", "twine (==4.0.1)", "wheel (==0.37.1)"] [[package]] name = "blinker" -version = "1.5" +version = "1.6.2" description = "Fast, simple object-to-object and broadcast signaling" category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=3.7" [[package]] name = "build" @@ -258,11 +250,11 @@ python-versions = ">=3.6" [[package]] name = "charset-normalizer" -version = "3.0.1" +version = "3.1.0" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." category = "dev" optional = false -python-versions = "*" +python-versions = ">=3.7.0" [[package]] name = "check-manifest" @@ -359,27 +351,41 @@ category = "dev" optional = false python-versions = ">=3.5" +[[package]] +name = "dictdiffer" +version = "0.9.0" +description = "Dictdiffer is a library that helps you to diff and patch dictionaries." +category = "main" +optional = false +python-versions = "*" + +[package.extras] +all = ["Sphinx (>=3)", "check-manifest (>=0.42)", "mock (>=1.3.0)", "numpy (>=1.13.0)", "numpy (>=1.15.0)", "numpy (>=1.18.0)", "numpy (>=1.20.0)", "pytest (==5.4.3)", "pytest (>=6)", "pytest-cov (>=2.10.1)", "pytest-isort (>=1.2.0)", "pytest-pycodestyle (>=2)", "pytest-pycodestyle (>=2.2.0)", "pytest-pydocstyle (>=2)", "pytest-pydocstyle (>=2.2.0)", "sphinx (>=3)", "sphinx-rtd-theme (>=0.2)", "tox (>=3.7.0)"] +docs = ["Sphinx (>=3)", "sphinx-rtd-theme (>=0.2)"] +numpy = ["numpy (>=1.13.0)", "numpy (>=1.15.0)", "numpy (>=1.18.0)", "numpy (>=1.20.0)"] +tests = ["check-manifest (>=0.42)", "mock (>=1.3.0)", "pytest (==5.4.3)", "pytest (>=6)", "pytest-cov (>=2.10.1)", "pytest-isort (>=1.2.0)", "pytest-pycodestyle (>=2)", "pytest-pycodestyle (>=2.2.0)", "pytest-pydocstyle (>=2)", "pytest-pydocstyle (>=2.2.0)", "sphinx (>=3)", "tox (>=3.7.0)"] + [[package]] name = "docker-services-cli" -version = "0.4.2" -description = "\"Python module to ease the creation and management of external services.\"" -category = "dev" +version = "0.6.1" +description = "Python module to ease the creation and management of external services." +category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.6" [package.dependencies] click = ">=7.0" [package.extras] -tests = ["check-manifest (>=0.42)", "pytest (>=6,<7)", "pytest-black (==0.3.9)", "pytest-cov (>=2.10.1)", "pytest-isort (>=1.2.0)", "pytest-pydocstyle (>=2.2.0)", "sphinx (>=4.5)"] +tests = ["check-manifest (>=0.42)", "pytest (>=6,<7.2.0)", "pytest-black (>=0.3.0)", "pytest-cov (>=3.0.0)", "pytest-isort (>=3.0.0)", "pytest-pycodestyle (>=2.2.0)", "pytest-pydocstyle (>=2.2.3)", "sphinx (>=4.5)"] [[package]] name = "docutils" -version = "0.17.1" +version = "0.19" description = "Docutils -- Python Documentation Utilities" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=3.7" [[package]] name = "dparse" @@ -417,7 +423,7 @@ requests = ["requests (>=2.4.0,<3.0.0)"] [[package]] name = "elasticsearch-dsl" -version = "7.4.0" +version = "7.4.1" description = "Python client for Elasticsearch" category = "main" optional = false @@ -444,7 +450,7 @@ tests = ["asttokens", "littleutils", "pytest", "rich"] [[package]] name = "flask" -version = "2.2.2" +version = "2.2.4" description = "A simple framework for building complex web applications." category = "main" optional = false @@ -476,22 +482,22 @@ Flask-SQLAlchemy = "*" SQLAlchemy = "*" [[package]] -name = "flask-babelex" -version = "0.9.4" -description = "Adds i18n/l10n support to Flask applications" +name = "flask-babel" +version = "3.1.0" +description = "Adds i18n/l10n support for Flask applications." category = "main" optional = false -python-versions = "*" +python-versions = ">=3.7,<4.0" [package.dependencies] -Babel = ">=1.0" -Flask = "*" -Jinja2 = ">=2.5" -speaklater = ">=1.2" +Babel = ">=2.12" +Flask = ">=2.0" +Jinja2 = ">=3.1" +pytz = ">=2022.7" [[package]] name = "flask-celeryext" -version = "0.4.3" +version = "0.5.0" description = "\"Flask-CeleryExt is a simple integration layer between Celery and Flask.\"" category = "main" optional = false @@ -499,10 +505,10 @@ python-versions = ">=3.6" [package.dependencies] celery = ">=5.1.0" -Flask = ">=1.1" +Flask = ">=2.2.0" [package.extras] -tests = ["Sphinx (>=4.2.0)", "check-manifest (>=0.42)", "coverage (>=5.3,<6)", "docker-services-cli (>=0.4.0)", "msgpack-python (>=0.5.6)", "pytest (>=6,<7)", "pytest-black (>=0.3.12)", "pytest-cov (>=3.0.0)", "pytest-flask (>=1.2.0)", "pytest-isort (>=3.0.0)", "pytest-mock (>=2.0.0)", "pytest-pydocstyle (>=2.2.0)", "redis (>=4.1.4)"] +tests = ["Sphinx (>=4.2.0)", "check-manifest (>=0.42)", "coverage (>=5.3,<6)", "docker-services-cli (>=0.4.0)", "importlib-metadata (<5)", "msgpack-python (>=0.5.6)", "pytest (>=6,<7.2.0)", "pytest-black (>=0.3.12)", "pytest-cov (>=3.0.0)", "pytest-flask (>=1.2.0)", "pytest-isort (>=3.0.0)", "pytest-mock (>=2.0.0)", "pytest-pydocstyle (>=2.2.0)", "redis (>=4.1.4)"] [[package]] name = "flask-cors" @@ -541,7 +547,7 @@ wcwidth = ">=0.2.5" [[package]] name = "greenlet" -version = "2.0.1" +version = "2.0.2" description = "Lightweight in-process concurrent programming" category = "main" optional = false @@ -549,7 +555,7 @@ python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" [package.extras] docs = ["Sphinx", "docutils (<0.18)"] -test = ["faulthandler", "objgraph", "psutil"] +test = ["objgraph", "psutil"] [[package]] name = "idna" @@ -569,7 +575,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "importlib-metadata" -version = "4.13.0" +version = "6.6.0" description = "Read metadata from Python packages" category = "main" optional = false @@ -579,13 +585,13 @@ python-versions = ">=3.7" zipp = ">=0.5" [package.extras] -docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] perf = ["ipython"] testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"] [[package]] name = "importlib-resources" -version = "5.10.2" +version = "5.12.0" description = "Read resources from Python packages" category = "main" optional = false @@ -608,7 +614,7 @@ python-versions = ">=3.7" [[package]] name = "invenio-base" -version = "1.2.13" +version = "1.2.14" description = "\"Base package for building Invenio application factories.\"" category = "main" optional = false @@ -616,7 +622,7 @@ python-versions = ">=3.7" [package.dependencies] blinker = ">=1.4" -Flask = ">=1.1.4,<3.0.0" +Flask = ">=1.1.4,<2.3.0" importlib-metadata = ">=4.4" importlib-resources = ">=5.0" itsdangerous = ">=1.1.0,<2.1.0" @@ -628,22 +634,23 @@ tests = ["pytest-black (>=0.3.0,<0.3.10)", "pytest-invenio (>=1.4.2)", "sphinx ( [[package]] name = "invenio-celery" -version = "1.2.5" -description = "\"Celery module for Invenio.\"" +version = "1.2.4" +description = "Celery module for Invenio." category = "main" optional = false -python-versions = ">=3.7" +python-versions = "*" [package.dependencies] celery = ">=5.1.0,<5.3" Flask-CeleryExt = ">=0.3.4" -importlib-metadata = ">=4.0.0,<5.0.0" invenio-base = ">=1.2.5" msgpack = ">=0.6.2" redis = ">=2.10.0" [package.extras] -tests = ["Sphinx (==4.2.0)", "pytest-black (>=0.3.0,<0.3.10)", "pytest-invenio (>=1.4.0)"] +all = ["Sphinx (==4.2.0)", "pytest-invenio (>=1.4.0)"] +docs = ["Sphinx (==4.2.0)"] +tests = ["pytest-invenio (>=1.4.0)"] [[package]] name = "invenio-db" @@ -657,6 +664,7 @@ python-versions = ">=3.6" Flask-Alembic = ">=2.0.1" Flask-SQLAlchemy = ">=2.1,<3.0.0" invenio-base = ">=1.2.10" +psycopg2-binary = {version = ">=2.8.6", optional = true, markers = "extra == \"postgresql\""} SQLAlchemy = ">=1.2.18,<1.5.0" SQLAlchemy-Continuum = ">=1.3.12" SQLAlchemy-Utils = ">=0.33.1,<0.39" @@ -668,7 +676,7 @@ tests = ["Sphinx (==4.2.0)", "cryptography (>=2.1.4)", "pytest-invenio (>=1.4.5) [[package]] name = "invenio-i18n" -version = "1.3.3" +version = "2.0.0" description = "Invenio internationalization (I18N) module." category = "main" optional = false @@ -676,36 +684,35 @@ python-versions = ">=3.7" [package.dependencies] Babel = ">=2.8" -Flask-BabelEx = ">=0.9.4" +Flask-Babel = ">=3.0.0" invenio-base = ">=1.2.11" [package.extras] -tests = ["invenio-accounts[mysql,postgresql] (>=1.4.13)", "pytest-black (>=0.3.0,<0.3.10)", "pytest-invenio (>=1.4.6)", "sphinx (>=4.5)"] +tests = ["Flask-Login (>=0.6.2)", "invenio-assets (>=1.3.0,<2.0.0)", "pytest-black (>=0.3.0)", "pytest-invenio (>=1.4.6)", "sphinx (>=4.5)"] [[package]] name = "invenio-indexer" -version = "1.2.7" -description = "Record indexer for Invenio." +version = "2.1.1" +description = "\"Record indexer for Invenio.\"" category = "main" optional = false -python-versions = "*" +python-versions = ">=3.7" [package.dependencies] -invenio-db = ">=1.0.14" -invenio-pidstore = ">=1.2.0" -invenio-records = ">=1.4.0" +invenio-db = ">=1.0.14,<2.0.0" +invenio-pidstore = ">=1.2.0,<2.0.0" +invenio-records = ">=2.0.0,<3.0.0" pytz = ">=2016.4" [package.extras] -all = ["Sphinx (>=4.2.0,<5)", "attrs (>=17.4.0)", "pytest-invenio (>=1.4.6)", "redis (>=3.4.0)"] -docs = ["Sphinx (>=4.2.0,<5)"] -elasticsearch6 = ["invenio-search[elasticsearch6] (>=1.4.0)"] -elasticsearch7 = ["invenio-search[elasticsearch7] (>=1.4.0)"] -tests = ["attrs (>=17.4.0)", "pytest-invenio (>=1.4.6)", "redis (>=3.4.0)"] +elasticsearch7 = ["elasticsearch (>=7.5.0,<7.14.0)", "invenio-search[elasticsearch7] (>=2.1.0,<3.0.0)"] +opensearch1 = ["invenio-search[opensearch1] (>=2.1.0,<3.0.0)"] +opensearch2 = ["invenio-search[opensearch2] (>=2.1.0,<3.0.0)"] +tests = ["attrs (>=17.4.0)", "pytest-black (>=0.3.0)", "pytest-invenio (>=2.1.0,<3.0.0)", "redis (>=3.4.0)", "sphinx (>=4.5)"] [[package]] name = "invenio-pidstore" -version = "1.2.4" +version = "1.3.1" description = "\"Invenio module that stores and registers persistent identifiers.\"" category = "main" optional = false @@ -716,14 +723,14 @@ base32-lib = ">=1.0.1" importlib-metadata = ">=4.4" importlib-resources = ">=5.0" invenio-base = ">=1.2.5" -invenio-i18n = ">=1.2.0" +invenio-i18n = ">=2.0.0" [package.extras] -tests = ["Flask-Menu (>=0.5.1)", "SQLAlchemy-Continuum (>=1.3.11)", "Sphinx (>=4.5.0)", "datacite (>=0.1.0)", "invenio-access (>=1.0.0)", "invenio-accounts (>=1.4.0)", "invenio-admin (>=1.2.0)", "invenio-db[mysql,postgresql,versioning] (>=1.0.9,<2.0.0)", "mock (>=3.0.0)", "pytest-black (>=0.3.0,<0.3.10)", "pytest-invenio (>=1.4.0)"] +tests = ["Flask-Menu (>=0.5.1)", "SQLAlchemy-Continuum (>=1.3.11)", "Sphinx (>=4.5.0)", "datacite (>=0.1.0)", "invenio-access (>=1.0.0)", "invenio-accounts (>=1.4.0)", "invenio-admin (>=1.2.0)", "invenio-db[mysql,postgresql,versioning] (>=1.0.9,<2.0.0)", "mock (>=3.0.0)", "pytest-black (>=0.3.0)", "pytest-invenio (>=1.4.0)"] [[package]] name = "invenio-records" -version = "2.0.1" +version = "2.1.0" description = "Invenio-Records is a metadata storage module." category = "main" optional = false @@ -732,7 +739,7 @@ python-versions = ">=3.7" [package.dependencies] arrow = ">=0.16.0" invenio-celery = ">=1.2.4,<2.0.0" -invenio-i18n = ">=1.3.2,<2.0.0" +invenio-i18n = ">=2.0.0,<3.0.0" jsonpatch = ">=1.26" jsonref = ">=0.2" jsonresolver = ">=0.3.1" @@ -743,37 +750,35 @@ admin = ["invenio-admin (>=1.2.1,<2.0.0)"] mysql = ["invenio-db[mysql,versioning] (>=1.0.14,<2.0.0)"] postgresql = ["invenio-db[postgresql,versioning] (>=1.0.14,<2.0.0)"] sqlite = ["invenio-db[versioning] (>=1.0.14,<2.0.0)"] -tests = ["invenio-admin (>=1.2.1,<2.0.0)", "pytest-black (>=0.3.0)", "pytest-invenio (>=2.1.0,<3.0.0)", "sphinx (>=4.5)"] +tests = ["invenio-admin (>=1.4.0,<2.0.0)", "pytest-black (>=0.3.0)", "pytest-invenio (>=2.1.0,<3.0.0)", "sphinx (>=4.5)"] [[package]] name = "invenio-records-rest" -version = "1.9.0" -description = "REST API for invenio-records." +version = "2.2.0" +description = "\"REST API for invenio-records.\"" category = "main" optional = false -python-versions = "*" +python-versions = ">=3.7" [package.dependencies] bleach = ">=2.1.3" ftfy = ">=4.4.3" -invenio-base = ">=1.2.5" -invenio-i18n = ">=1.3.0" -invenio-indexer = ">=1.2.0" -invenio-pidstore = ">=1.2.1" -invenio-records = ">=1.6.0" -invenio-rest = ">=1.2.4" +invenio-base = ">=1.2.5,<2.0.0" +invenio-i18n = ">=2.0.0,<3.0.0" +invenio-indexer = ">=2.1.0,<3.0.0" +invenio-pidstore = ">=1.2.1,<2.0.0" +invenio-records = ">=2.0.0,<3.0.0" +invenio-rest = ">=1.2.4,<2.0.0" [package.extras] -all = ["Flask-Login (>=0.3.2)", "Sphinx (>=4.2.0)", "citeproc-py (>=0.6.0)", "citeproc-py-styles (>=0.1.3)", "datacite (>=1.0.1)", "dcxml (>=0.1.2)", "invenio-config (>=1.0.2)", "invenio-db[all] (>=1.0.9)", "pyld (>=1.0.5,<2)", "pytest-invenio (>=1.4.0)"] citeproc = ["citeproc-py (>=0.6.0)", "citeproc-py-styles (>=0.1.3)"] datacite = ["datacite (>=1.0.1)"] -docs = ["Sphinx (>=4.2.0)"] dublincore = ["dcxml (>=0.1.2)"] -elasticsearch5 = ["invenio-search[elasticsearch5] (>=1.4.2)"] -elasticsearch6 = ["invenio-search[elasticsearch6] (>=1.4.2)"] -elasticsearch7 = ["invenio-search[elasticsearch7] (>=1.4.2)"] +elasticsearch7 = ["invenio-search[elasticsearch7] (>=2.1.0,<3.0.0)"] jsonld = ["pyld (>=1.0.5,<2)"] -tests = ["Flask-Login (>=0.3.2)", "invenio-config (>=1.0.2)", "invenio-db[all] (>=1.0.9)", "pytest-invenio (>=1.4.0)"] +opensearch1 = ["invenio-search[opensearch1] (>=2.1.0,<3.0.0)"] +opensearch2 = ["invenio-search[opensearch2] (>=2.1.0,<3.0.0)"] +tests = ["Flask-Login (>=0.3.2)", "citeproc-py (>=0.6.0)", "citeproc-py-styles (>=0.1.3)", "cryptography (>=2.1.4)", "datacite (>=1.0.1)", "dcxml (>=0.1.2)", "invenio-config (>=1.0.2,<2.0.0)", "invenio-db[mysql,postgresql] (>=1.0.9,<2.0.0)", "mock (>=4)", "pyld (>=1.0.5,<2)", "pytest-black (>=0.3.0)", "pytest-invenio (>=2.0.0,<3.0.0)", "sphinx (>=4.5)"] [[package]] name = "invenio-rest" @@ -797,29 +802,27 @@ tests = ["Sphinx (==4.2.0)", "pytest-invenio (>=1.4.0)", "xmltodict (>=0.11.0)"] [[package]] name = "invenio-search" -version = "1.4.2" -description = "Invenio module for information retrieval." +version = "2.2.0" +description = "\"Invenio module for information retrieval.\"" category = "main" optional = false -python-versions = "*" +python-versions = ">=3.7" [package.dependencies] +dictdiffer = ">=0.9.0" elasticsearch = {version = ">=7.0.0,<7.14", optional = true, markers = "extra == \"elasticsearch7\""} elasticsearch-dsl = {version = ">=7.0.0,<8.0.0", optional = true, markers = "extra == \"elasticsearch7\""} -invenio-base = ">=1.2.3" +invenio-base = ">=1.2.3,<2.0.0" [package.extras] -all = ["Sphinx (>=3)", "invenio-accounts (>=1.4.0)", "invenio-db[versioning] (>=1.0.0)", "mock (>=1.3.0)", "pytest-invenio (>=1.4.0)"] -docs = ["Sphinx (>=3)", "invenio-accounts (>=1.4.0)"] -elasticsearch2 = ["elasticsearch (>=2.0.0,<3.0.0)", "elasticsearch-dsl (>=2.0.0,<3.0.0)"] -elasticsearch5 = ["elasticsearch (>=5.0.0,<6.0.0)", "elasticsearch-dsl (>=5.1.0,<6.0.0)"] -elasticsearch6 = ["elasticsearch (>=6.0.0,<7.0.0)", "elasticsearch-dsl (>=6.0.0,<6.2.0)"] elasticsearch7 = ["elasticsearch (>=7.0.0,<7.14)", "elasticsearch-dsl (>=7.0.0,<8.0.0)"] -tests = ["invenio-db[versioning] (>=1.0.0)", "mock (>=1.3.0)", "pytest-invenio (>=1.4.0)"] +opensearch1 = ["opensearch-dsl (>=1.0.0,<2.0.0)", "opensearch-py (>=1.1.0,<2.0.0)"] +opensearch2 = ["opensearch-dsl (>=2.0.0,<3.0.0)", "opensearch-py (>=2.0.0,<3.0.0)"] +tests = ["Sphinx (>=3)", "invenio-accounts (>=2.0.0,<3.0.0)", "invenio-db[versioning] (>=1.0.0,<2.0.0)", "mock (>=1.3.0)", "pytest-black (>=0.3.0)", "pytest-invenio (>=2.0.0,<3.0.0)"] [[package]] name = "ipython" -version = "8.8.0" +version = "8.12.1" description = "IPython: Productive Interactive Computing" category = "dev" optional = false @@ -834,13 +837,14 @@ jedi = ">=0.16" matplotlib-inline = "*" pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""} pickleshare = "*" -prompt-toolkit = ">=3.0.11,<3.1.0" +prompt-toolkit = ">=3.0.30,<3.0.37 || >3.0.37,<3.1.0" pygments = ">=2.4.0" stack-data = "*" traitlets = ">=5" +typing-extensions = {version = "*", markers = "python_version < \"3.10\""} [package.extras] -all = ["black", "curio", "docrepr", "ipykernel", "ipyparallel", "ipywidgets", "matplotlib", "matplotlib (!=3.2.0)", "nbconvert", "nbformat", "notebook", "numpy (>=1.20)", "pandas", "pytest (<7)", "pytest (<7.1)", "pytest-asyncio", "qtconsole", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "stack-data", "testpath", "trio", "typing-extensions"] +all = ["black", "curio", "docrepr", "ipykernel", "ipyparallel", "ipywidgets", "matplotlib", "matplotlib (!=3.2.0)", "nbconvert", "nbformat", "notebook", "numpy (>=1.21)", "pandas", "pytest (<7)", "pytest (<7.1)", "pytest-asyncio", "qtconsole", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "stack-data", "testpath", "trio", "typing-extensions"] black = ["black"] doc = ["docrepr", "ipykernel", "matplotlib", "pytest (<7)", "pytest (<7.1)", "pytest-asyncio", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "stack-data", "testpath", "typing-extensions"] kernel = ["ipykernel"] @@ -850,19 +854,19 @@ notebook = ["ipywidgets", "notebook"] parallel = ["ipyparallel"] qtconsole = ["qtconsole"] test = ["pytest (<7.1)", "pytest-asyncio", "testpath"] -test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.20)", "pandas", "pytest (<7.1)", "pytest-asyncio", "testpath", "trio"] +test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.21)", "pandas", "pytest (<7.1)", "pytest-asyncio", "testpath", "trio"] [[package]] name = "isort" -version = "5.11.4" +version = "5.12.0" description = "A Python utility / library to sort Python imports." category = "dev" optional = false -python-versions = ">=3.7.0" +python-versions = ">=3.8.0" [package.extras] -colors = ["colorama (>=0.4.3,<0.5.0)"] -pipfile-deprecated-finder = ["pipreqs", "requirementslib"] +colors = ["colorama (>=0.4.3)"] +pipfile-deprecated-finder = ["pip-shims (>=0.5.2)", "pipreqs", "requirementslib"] plugins = ["setuptools"] requirements-deprecated-finder = ["pip-api", "pipreqs"] @@ -1048,7 +1052,7 @@ traitlets = "*" [[package]] name = "msgpack" -version = "1.0.4" +version = "1.0.5" description = "MessagePack serializer" category = "main" optional = false @@ -1056,11 +1060,14 @@ python-versions = "*" [[package]] name = "packaging" -version = "23.0" +version = "21.3" description = "Core utilities for Python packages" category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.6" + +[package.dependencies] +pyparsing = ">=2.0.2,<3.0.5 || >3.0.5" [[package]] name = "parso" @@ -1114,15 +1121,23 @@ dev = ["pre-commit", "tox"] [[package]] name = "prompt-toolkit" -version = "3.0.36" +version = "3.0.38" description = "Library for building powerful interactive command lines in Python" category = "main" optional = false -python-versions = ">=3.6.2" +python-versions = ">=3.7.0" [package.dependencies] wcwidth = "*" +[[package]] +name = "psycopg2-binary" +version = "2.9.6" +description = "psycopg2 - Python-PostgreSQL Database Adapter" +category = "main" +optional = false +python-versions = ">=3.6" + [[package]] name = "ptyprocess" version = "0.7.0" @@ -1174,7 +1189,7 @@ toml = ["toml"] [[package]] name = "pyflakes" -version = "2.5.0" +version = "3.0.1" description = "passive checker of Python programs" category = "dev" optional = false @@ -1182,15 +1197,26 @@ python-versions = ">=3.6" [[package]] name = "pygments" -version = "2.14.0" +version = "2.15.1" description = "Pygments is a syntax highlighting package written in Python." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.extras] plugins = ["importlib-metadata"] +[[package]] +name = "pyparsing" +version = "3.0.9" +description = "pyparsing module - Classes and methods to define and execute parsing grammars" +category = "main" +optional = false +python-versions = ">=3.6.8" + +[package.extras] +diagrams = ["jinja2", "railroad-diagrams"] + [[package]] name = "pyproject-hooks" version = "1.0.0" @@ -1212,24 +1238,23 @@ python-versions = ">=3.7" [[package]] name = "pytest" -version = "6.2.5" +version = "7.1.3" description = "pytest: simple powerful testing with Python" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] -atomicwrites = {version = ">=1.0", markers = "sys_platform == \"win32\""} attrs = ">=19.2.0" colorama = {version = "*", markers = "sys_platform == \"win32\""} iniconfig = "*" packaging = "*" pluggy = ">=0.12,<2.0" py = ">=1.8.2" -toml = "*" +tomli = ">=1.0.0" [package.extras] -testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "requests", "xmlschema"] +testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"] [[package]] name = "pytest-cov" @@ -1264,8 +1289,8 @@ docs = ["Sphinx", "sphinx-rtd-theme"] [[package]] name = "pytest-invenio" -version = "1.4.15" -description = "\"Pytest fixtures for Invenio.\"" +version = "2.1.2" +description = "Pytest fixtures for Invenio." category = "dev" optional = false python-versions = ">=3.7" @@ -1273,19 +1298,22 @@ python-versions = ">=3.7" [package.dependencies] check-manifest = ">=0.42" coverage = ">=5.3,<6" -docker-services-cli = ">=0.4.0,<0.5.0" +docker-services-cli = ">=0.4.0" importlib-metadata = ">=4.4" importlib-resources = ">=5.0" -pytest = ">=6,<7" +pytest = ">=6,<7.2.0" pytest-cov = ">=3.0.0" pytest-flask = ">=1.2.0" pytest-isort = ">=3.0.0" pytest-pycodestyle = ">=2.2.0" -pytest-pydocstyle = ">=2.2.0" +pytest-pydocstyle = ">=2.2.3" selenium = ">=3.7.0,<4" [package.extras] -tests = ["elasticsearch (>=7.0.0,<7.14)", "elasticsearch-dsl (>=7.0.0,<8.0.0)", "invenio-celery (>=1.2.4)", "invenio-db (>=1.0.12,<1.1.0)", "invenio-files-rest (>=1.3.2)", "invenio-mail (>=1.0.2,<1.1.0)", "invenio-search (>=1.4.2,<1.5.0)", "pytest-black (>=0.3.0,<0.3.10)", "sphinx (>=4.5)"] +elasticsearch7 = ["invenio-search[elasticsearch7] (>=2.1.0,<3.0.0)"] +opensearch1 = ["invenio-search[opensearch1] (>=2.1.0,<3.0.0)"] +opensearch2 = ["invenio-search[opensearch2] (>=2.1.0,<3.0.0)"] +tests = ["invenio-celery (>=1.2.4,<2.0.0)", "invenio-db (>=1.0.12,<2.0.0)", "invenio-files-rest (>=1.3.2,<2.0.0)", "invenio-mail (>=1.0.2,<2.0.0)", "invenio-search (>=2.1.0,<3.0.0)", "pytest-black (>=0.3.0)", "sphinx (>=4.5)"] [[package]] name = "pytest-isort" @@ -1301,33 +1329,34 @@ pytest = ">=5.0" [[package]] name = "pytest-pycodestyle" -version = "2.2.1" +version = "2.3.1" description = "pytest plugin to run pycodestyle" category = "dev" optional = false -python-versions = "~=3.6" +python-versions = "~=3.7" [package.dependencies] +py = "*" pycodestyle = "*" -pytest = ">=5.4" +pytest = ">=7.0" [package.extras] tests = ["pytest-isort"] [[package]] name = "pytest-pydocstyle" -version = "2.2.1" +version = "2.3.2" description = "pytest plugin to run pydocstyle" category = "dev" optional = false -python-versions = "~=3.6" +python-versions = "~=3.7" [package.dependencies] pydocstyle = "*" -pytest = ">=5.4" +pytest = ">=7.0" [package.extras] -tests = ["pytest-isort", "pytest-pycodestyle (>=2.1,<3.0)"] +tests = ["pytest-isort", "pytest-pycodestyle (>=2.3,<3.0)"] [[package]] name = "python-dateutil" @@ -1342,7 +1371,7 @@ six = ">=1.5" [[package]] name = "pytz" -version = "2022.7.1" +version = "2023.3" description = "World timezone definitions, modern and historical" category = "main" optional = false @@ -1358,14 +1387,14 @@ python-versions = ">=3.6" [[package]] name = "redis" -version = "4.4.2" +version = "4.5.4" description = "Python client for Redis database and key-value store" category = "main" optional = false python-versions = ">=3.7" [package.dependencies] -async-timeout = ">=4.0.2" +async-timeout = {version = ">=4.0.2", markers = "python_version <= \"3.11.2\""} [package.extras] hiredis = ["hiredis (>=1.0.0)"] @@ -1373,11 +1402,11 @@ ocsp = ["cryptography (>=36.0.1)", "pyopenssl (==20.0.1)", "requests (>=2.26.0)" [[package]] name = "requests" -version = "2.28.2" +version = "2.29.0" description = "Python HTTP for Humans." category = "dev" optional = false -python-versions = ">=3.7, <4" +python-versions = ">=3.7" [package.dependencies] certifi = ">=2017.4.17" @@ -1390,19 +1419,47 @@ socks = ["PySocks (>=1.5.6,!=1.5.7)"] use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] [[package]] -name = "safety" -version = "1.10.3" -description = "Checks installed dependencies for known vulnerabilities." +name = "ruamel-yaml" +version = "0.17.21" +description = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order" +category = "dev" +optional = false +python-versions = ">=3" + +[package.dependencies] +"ruamel.yaml.clib" = {version = ">=0.2.6", markers = "platform_python_implementation == \"CPython\" and python_version < \"3.11\""} + +[package.extras] +docs = ["ryd"] +jinja2 = ["ruamel.yaml.jinja2 (>=0.2)"] + +[[package]] +name = "ruamel-yaml-clib" +version = "0.2.7" +description = "C version of reader, parser and emitter for ruamel.yaml derived from libyaml" category = "dev" optional = false python-versions = ">=3.5" +[[package]] +name = "safety" +version = "2.3.5" +description = "Checks installed dependencies for known vulnerabilities and licenses." +category = "dev" +optional = false +python-versions = "*" + [package.dependencies] -Click = ">=6.0" -dparse = ">=0.5.1" -packaging = "*" +Click = ">=8.0.2" +dparse = ">=0.6.2" +packaging = ">=21.0,<22.0" requests = "*" -setuptools = "*" +"ruamel.yaml" = ">=0.17.21" +setuptools = ">=19.3" + +[package.extras] +github = ["jinja2 (>=3.1.0)", "pygithub (>=1.43.3)"] +gitlab = ["python-gitlab (>=1.3.0)"] [[package]] name = "selenium" @@ -1417,7 +1474,7 @@ urllib3 = "*" [[package]] name = "setuptools" -version = "66.0.0" +version = "67.7.2" description = "Easily download, build, install, upgrade, and uninstall Python packages" category = "dev" optional = false @@ -1430,7 +1487,7 @@ testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs ( [[package]] name = "simplejson" -version = "3.18.1" +version = "3.19.1" description = "Simple, fast, extensible JSON encoder/decoder for Python" category = "main" optional = false @@ -1452,34 +1509,26 @@ category = "main" optional = false python-versions = "*" -[[package]] -name = "speaklater" -version = "1.3" -description = "implements a lazy string for python useful for use with gettext" -category = "main" -optional = false -python-versions = "*" - [[package]] name = "sphinx" -version = "4.5.0" +version = "7.0.0" description = "Python documentation generator" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.8" [package.dependencies] alabaster = ">=0.7,<0.8" -babel = ">=1.3" -colorama = {version = ">=0.3.5", markers = "sys_platform == \"win32\""} -docutils = ">=0.14,<0.18" -imagesize = "*" -importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""} -Jinja2 = ">=2.3" -packaging = "*" -Pygments = ">=2.0" -requests = ">=2.5.0" -snowballstemmer = ">=1.1" +babel = ">=2.9" +colorama = {version = ">=0.4.5", markers = "sys_platform == \"win32\""} +docutils = ">=0.18.1,<0.20" +imagesize = ">=1.3" +importlib-metadata = {version = ">=4.8", markers = "python_version < \"3.10\""} +Jinja2 = ">=3.0" +packaging = ">=21.0" +Pygments = ">=2.13" +requests = ">=2.25.0" +snowballstemmer = ">=2.0" sphinxcontrib-applehelp = "*" sphinxcontrib-devhelp = "*" sphinxcontrib-htmlhelp = ">=2.0.0" @@ -1489,12 +1538,12 @@ sphinxcontrib-serializinghtml = ">=1.1.5" [package.extras] docs = ["sphinxcontrib-websupport"] -lint = ["docutils-stubs", "flake8 (>=3.5.0)", "isort", "mypy (>=0.931)", "types-requests", "types-typed-ast"] -test = ["cython", "html5lib", "pytest", "pytest-cov", "typed-ast"] +lint = ["docutils-stubs", "flake8 (>=3.5.0)", "flake8-simplify", "isort", "mypy (>=0.990)", "ruff", "sphinx-lint", "types-requests"] +test = ["cython", "filelock", "html5lib", "pytest (>=4.6)"] [[package]] name = "sphinxcontrib-applehelp" -version = "1.0.3" +version = "1.0.4" description = "sphinxcontrib-applehelp is a Sphinx extension which outputs Apple help books" category = "dev" optional = false @@ -1518,11 +1567,11 @@ test = ["pytest"] [[package]] name = "sphinxcontrib-htmlhelp" -version = "2.0.0" +version = "2.0.1" description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.8" [package.extras] lint = ["docutils-stubs", "flake8", "mypy"] @@ -1565,7 +1614,7 @@ test = ["pytest"] [[package]] name = "sqlalchemy" -version = "1.4.46" +version = "1.4.48" description = "Database Abstraction Library" category = "main" optional = false @@ -1674,7 +1723,7 @@ python-versions = ">=3.7" [[package]] name = "traitlets" -version = "5.8.1" +version = "5.9.0" description = "Traitlets Python configuration system" category = "dev" optional = false @@ -1684,9 +1733,17 @@ python-versions = ">=3.7" docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"] test = ["argcomplete (>=2.0)", "pre-commit", "pytest", "pytest-mock"] +[[package]] +name = "typing-extensions" +version = 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a/rero_invenio_base/cli/es/__init__.py +++ b/rero_invenio_base/cli/es/__init__.py @@ -23,6 +23,7 @@ from .index import index from .slm import slm from .snapshot import snapshot +from .task import task @click.group() @@ -34,5 +35,6 @@ def es(): es.add_command(alias) es.add_command(slm) es.add_command(snapshot) +es.add_command(task) __all__ = ('index') diff --git a/rero_invenio_base/cli/es/index.py b/rero_invenio_base/cli/es/index.py index 2b10b1a..fd32399 100644 --- a/rero_invenio_base/cli/es/index.py +++ b/rero_invenio_base/cli/es/index.py @@ -17,11 +17,20 @@ """Click elasticsearch index command-line utilities.""" import json +import sys +from pprint import pformat +from time import sleep import click from elasticsearch_dsl import Index from invenio_search import current_search, current_search_client -from invenio_search.cli import es_version_check, with_appcontext + +try: + from invenio_search.cli import es_version_check +except ImportError: + from invenio_search.cli import search_version_check as es_version_check + +from invenio_search.cli import with_appcontext from jsonpatch import make_patch @@ -95,7 +104,7 @@ def switch_index(old, new): for alias in aliases: current_search_client.indices.put_alias(new, alias) current_search_client.indices.delete_alias(old, alias) - click.secho('Sucessfully switched.', fg='green') + click.secho('Successfully switched.', fg='green') @index.command('create') @@ -113,7 +122,7 @@ def create_index(resource, index, verbose, templates): :param resource: the resource such as documents. :param index: the index name such as documents-document-v0.0.1-20211014 - :param verbose: display addtional message. + :param verbose: display additional message. :param templates: update also the es templates. """ if templates: @@ -162,8 +171,130 @@ def update_mapping(aliases, settings): f'error: {excep}', fg='red') if res.get('acknowledged'): click.secho( - f'index: {index} has been sucessfully updated', + f'index: {index} has been successfully updated', fg='green') else: click.secho( f'error: {res}', fg='red') + + +@index.command('move') +@with_appcontext +@es_version_check +@click.argument('resource') +@click.argument('old') +@click.argument('new') +@click.option('-t', '--templates/--no-templates', 'templates', is_flag=True, + default=True) +@click.option('-v', '--verbose/--no-verbose', 'verbose', + is_flag=True, default=False) +@click.option('-n', '--interval', default=1, type=int, + help='seconds to wait between updates') +def move_index(resource, old, new, templates, verbose, interval): + """Move index using the elasticsearch resource. + + :param resource: the resource such as documents. + :param old: full name of the old index + :param new: full name of the fresh created index + :param verbose: display additional message. + :param templates: update also the es templates. + """ + # create_index(resource, index, verbose, templates) + try: + if templates: + tbody = current_search_client.indices.get_template() + for tmpl in current_search.put_templates(): + click.secho(f'file:{tmpl[0]}, ok: {tmpl[1]}', fg='green') + new_tbody = current_search_client.indices.get_template() + if patch := make_patch(new_tbody, tbody): + click.secho('Templates are updated.', fg='green') + if verbose: + click.secho('Diff in templates', fg='green') + click.echo(patch) + else: + click.secho('Templates did not changed.', fg='yellow') + + f_mapping = list(current_search.aliases.get(resource).values()).pop() + mapping = json.load(open(f'{f_mapping}')) + current_search_client.indices.create(new, mapping) + click.secho(f'Index {new} has been created.', fg='green') + except Exception as err: + click.secho(f'ERROR CREATE: {err}', fg='red') + sys.exit(1) + + res = current_search_client.reindex( + body=dict( + source=dict( + index=old + ), + dest=dict( + index=new, + version_type='external_gte' + ) + ), + wait_for_completion=False + ) + task = res["task"] + click.secho(f'Task: {task}', fg='green') + if interval == 0: + return + count = 0 + # wait for task + res = current_search_client.tasks.get(task) + while not res.get('completed'): + task_info = res.get('task') + if verbose and task_info: + click.secho( + f'Watching task: {task} {count} seconds ...', fg='green') + click.secho(f'{task_info.get("description")}', fg='green') + click.secho(f'{pformat( task_info.get("status"))}', fg='green') + sleep(interval) + count += interval + res = current_search_client.tasks.get(task) + if verbose: + click.secho(f'Finished task: {task} {count} seconds ...', fg='yellow') + click.secho(f'{pformat(res.get("response"))}', fg='yellow') + if failures := res.get('failures'): + click.secho(f'ERROR REINDEX: {failures}', fg='red') + sys.exit(2) + + # switch index + try: + aliases = current_search_client.indices.get_alias().get(old)\ + .get('aliases').keys() + for alias in aliases: + current_search_client.indices.put_alias(new, alias) + current_search_client.indices.delete_alias(old, alias) + click.secho('Successfully switched.', fg='green') + except Exception as err: + click.secho(f'ERROR SWITCH: {err}', fg='red') + sys.exit(3) + + +@index.command() +@click.option('-i', '--index', default='', + help='all if not specified') +@click.option('-a', '--aliases', is_flag=True, default=False, + help='Display aliases.') +@click.option('-m', '--mappings', is_flag=True, default=False, + help='Display mappings.') +@click.option('-s', '--settings', is_flag=True, default=False, + help='Display settings.') +@with_appcontext +def info(index, aliases, mappings, settings): + """List indices of given alias.""" + def print_info(name, data): + """Display additional info.""" + msg = pformat(data.get(name)) + click.secho(f'{name}:', fg='yellow') + click.secho(f'{msg}', fg='yellow') + + indices = current_search_client.indices.get(f'{index}*') + for index, data in indices.items(): + click.secho(f'{index}', fg='green') + if aliases: + print_info('aliases', data) + if mappings: + print_info('mappings', data) + if settings: + print_info('settings', data) diff --git a/rero_invenio_base/cli/es/task.py b/rero_invenio_base/cli/es/task.py new file mode 100644 index 0000000..14362be --- /dev/null +++ b/rero_invenio_base/cli/es/task.py @@ -0,0 +1,131 @@ +# -*- coding: utf-8 -*- +# +# RERO Invenio Base +# Copyright (C) 2023 RERO. +# +# This program is free software: you can redistribute it and/or modify +# it under the terms of the GNU Affero General Public License as published by +# the Free Software Foundation, version 3 of the License. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU Affero General Public License for more details. +# +# You should have received a copy of the GNU Affero General Public License +# along with this program. If not, see . + +"""Click elasticsearch tasks command-line utilities.""" +import sys +from pprint import pformat +from time import sleep + +import click +from invenio_search import current_search_client + +try: + from invenio_search.cli import es_version_check +except ImportError: + from invenio_search.cli import search_version_check as es_version_check + +from invenio_search.cli import with_appcontext + + +def abort_if_false(ctx, param, value): + """Abort command is value is False.""" + if not value: + ctx.abort() + + +@click.group() +def task(): + """Elasticsearch task commands. + + See: https://www.elastic.co/guide/en/elasticsearch/reference/7.10/tasks.html # noqa + """ + + +@task.command('get') +@with_appcontext +@es_version_check +@click.argument('task') +def task_get(task): + """Get task info. + + :param task: task id. + """ + try: + res = current_search_client.tasks.get(task) + if info := res.get("response"): + click.secho(f'{pformat(info)}', fg='green') + elif info := res.get('task'): + click.secho(f'{info.get("description")}', fg='yellow') + click.secho(f'{pformat(info.get("status"))}', fg='yellow') + else: + click.secho(f'{pformat(res)}', fg='blue') + except Exception as err: + click.secho(f'Error: {err}', fg='red') + sys.exit(1) + + +@task.command('list') +@with_appcontext +@es_version_check +def task_list(): + """Get task list.""" + res = current_search_client.tasks.list() + click.secho(f'{pformat(res)}', fg='green') + + +@task.command('cancel') +@with_appcontext +@click.option('--yes-i-know', is_flag=True, callback=abort_if_false, + expose_value=False, + prompt='Do you really want to cancel the task?') +@click.argument('task') +@es_version_check +def task_cancel(task): + """Cancel task. + + :param task: task id. + """ + try: + res = current_search_client.tasks.cancel(task) + click.secho(f'{pformat(res)}', fg='yellow') + except Exception as err: + click.secho(f'Error: {err}', fg='red') + sys.exit(1) + + +@task.command('watch') +@with_appcontext +@es_version_check +@click.argument('task') +@click.option('-n', '--interval', default=1, type=int, + help='seconds to wait between updates') +def task_watch(task, interval): + """Watch task info. + + :param task: task id. + """ + click.secho(f'Watching task: {task}', fg='green') + try: + seconds = 0 + res = current_search_client.tasks.get(task) + while not res.get('completed'): + if info := res.get('task'): + click.secho( + f'Watching task: {task} {seconds} seconds ...', + fg='green' + ) + click.secho(f'{info.get("description")}', fg='yellow') + click.secho(f'{pformat(info.get("status"))}', fg='yellow') + sleep(interval) + seconds += interval + res = current_search_client.tasks.get(task) + + click.secho(f'Finished task: {task} {seconds} seconds ...', fg='green') + click.secho(f'{pformat(res.get("response"))}', fg='green') + except Exception as err: + click.secho(f'Error: {err}', fg='red') + sys.exit(1) diff --git a/run-tests.sh b/run-tests.sh index dc2f425..94b8eeb 100755 --- a/run-tests.sh +++ b/run-tests.sh @@ -37,16 +37,13 @@ trap cleanup EXIT # Check vulnerabilities: # # Exception are -# +============================+===========+==========================+==========+ -# | package | installed | affected | ID | -# +============================+===========+==========================+==========+ -# | sqlalchemy | 1.4.46 | <2.0.0b1 | 51668 | -# | sqlalchemy-utils | 0.38.3 | >=0.27.0 | 42194 | -# | py | 1.11.0 | <=1.11.0 | 51457 | -# | safety | 1.10.3 | <2.2.0 | 51358 | -# | wheel | 0.37.1 | <0.38.1 | 51499 | -# +==============================================================================+ -safety check -i 51668 -i 42194 -i 51457 -i 51358 -i 51499 +# -> Vulnerability found in sqlalchemy version 1.4.48 +# Vulnerability ID: 51668 +# -> Vulnerability found in sqlalchemy-utils version 0.38.3 +# Vulnerability ID: 42194 +# -> Vulnerability found in py version 1.11.0 +# Vulnerability ID: 51457 +safety check -o bare -i 51668 -i 42194 -i 51457 flask rero utils check_license check_license_config.yml pydocstyle rero_ils tests docs @@ -59,6 +56,7 @@ autoflake -c -r --remove-all-unused-imports --ignore-init-module-imports . &> /d python -m sphinx.cmd.build -qnNW docs docs/_build/html # Note: for now we do not need this for the tests. export DOCKER_SERVICES_FILEPATH=./docker-services.yml +export ELASTICSEARCH_VERSION=7.10.2 eval "$(docker-services-cli up --search ${SEARCH:-elasticsearch} --env)" python -m pytest tests_exit_code=$?