Merge remote-tracking branch 'origin/main' into feature/mx-1703-error…

…s-and-logs

.cruft.json

@@ -1,6 +1,6 @@
 {
   "template": "https://github.com/robert-koch-institut/mex-template",
-  "commit": "9167981a2eb9889a68c72a5b3cbdb11d5702c4b8",
+  "commit": "af56c8fa17144906e94518391acc9795d5f2dc89",
   "checkout": null,
   "context": {
     "cookiecutter": {

.github/workflows/cookiecutter.yml

@@ -52,16 +52,7 @@ jobs:
           SIGNING_PUB: ${{ secrets.SIGNING_PUB }}
         run: |
           eval "$(ssh-agent -s)"
-          install --directory ~/.ssh --mode 700
-          base64 -d <<< '${{ secrets.SIGNING_KEY }}' > ~/.ssh/mex
-          base64 -d <<< '${{ secrets.SIGNING_PUB }}' > ~/.ssh/mex.pub
-          chmod 600 ~/.ssh/*
-          ssh-add ~/.ssh/mex
-          git config --local user.email ${{ vars.MEX_BOT_EMAIL }}
-          git config --local user.name ${{ vars.MEX_BOT_USER }}
-          git config --local gpg.format ssh
-          git config --local user.signingkey ~/.ssh/mex.pub
-          git config --local commit.gpgsign true
+          pdm setup-commit-signing
 
       - name: Update template
         env:

.github/workflows/release.yml

@@ -63,16 +63,7 @@ jobs:
           SIGNING_PUB: ${{ secrets.SIGNING_PUB }}
         run: |
           eval "$(ssh-agent -s)"
-          install --directory ~/.ssh --mode 700
-          base64 -d <<< '${{ secrets.SIGNING_KEY }}' > ~/.ssh/mex
-          base64 -d <<< '${{ secrets.SIGNING_PUB }}' > ~/.ssh/mex.pub
-          chmod 600 ~/.ssh/*
-          ssh-add ~/.ssh/mex
-          git config --local user.email ${{ vars.MEX_BOT_EMAIL }}
-          git config --local user.name ${{ vars.MEX_BOT_USER }}
-          git config --local gpg.format ssh
-          git config --local user.signingkey ~/.ssh/mex.pub
-          git config --local commit.gpgsign true
+          pdm setup-commit-signing
 
       - name: Release new version
         id: release

.pre-commit-config.yaml

@@ -3,7 +3,7 @@ default_language_version:
   python: python3.11
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.6.5
+    rev: v0.7.2
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix]
@@ -25,7 +25,7 @@ repos:
       - id: fix-byte-order-marker
         name: byte-order
   - repo: https://github.com/pdm-project/pdm
-    rev: 2.19.1
+    rev: 2.20.0.post1
     hooks:
       - id: pdm-lock-check
         name: pdm

README.md

@@ -9,7 +9,7 @@ Backend server for the RKI metadata exchange.
 [![open-code](https://github.com/robert-koch-institut/mex-backend/actions/workflows/open-code.yml/badge.svg)](https://gitlab.opencode.de/robert-koch-institut/mex/mex-backend)
 [![testing](https://github.com/robert-koch-institut/mex-backend/actions/workflows/testing.yml/badge.svg)](https://github.com/robert-koch-institut/mex-backend/actions/workflows/testing.yml)
 
-## project
+## Project
 
 The Metadata Exchange (MEx) project is committed to improve the retrieval of RKI
 research data and projects. How? By focusing on metadata: instead of providing the
@@ -39,27 +39,28 @@ data Findable, Accessible, Interoperable and Reusable.
 **Contact** \
 For more information, please feel free to email us at [mex@rki.de](mailto:mex@rki.de).
 
-### Publisher of this document
+### Publisher
+
 **Robert Koch-Institut** \
 Nordufer 20 \
 13353 Berlin \
 Germany
 
-## package
+## Package
 
 The `mex-backend` package is a multi-purpose backend application with an HTTP-API. It
 provides endpoints to ingest data from ETL-pipelines, for a metadata editor application,
 and for publishing pipelines to extract standardized data for use in upstream frontend
 applications.
 
-## license
+## License
 
 This package is licensed under the [MIT license](/LICENSE). All other software
 components of the MEx project are open-sourced under the same license as well.
 
-## development
+## Development
 
-### installation
+### Installation
 
 - on unix, consider using pyenv https://github.com/pyenv/pyenv
   - get pyenv `curl https://pyenv.run | bash`
@@ -72,44 +73,44 @@ components of the MEx project are open-sourced under the same license as well.
   - switch version `pyenv global 3.11`
   - run `.\mex.bat install`
 
-### database
+### Database
 
 - for local development, neo4j desktop edition is recommended
   - make sure you download and run the same version as in `testing.yml`
   - also make sure db name, user and password match the `settings.py`
 - for production deployments, a container runtime is recommended
   - for a configuration example, see `compose.yaml`
 
-### linting and testing
+### Linting and testing
 
 - run all linters with `pdm lint`
 - run only unit tests with `pdm unit`
 - run unit and integration tests with `pdm test`
 
-### updating dependencies
+### Updating dependencies
 
 - update boilerplate files with `cruft update`
 - update global requirements in `requirements.txt` manually
 - update git hooks with `pre-commit autoupdate`
 - update package dependencies using `pdm update-all`
 - update github actions in `.github/workflows/*.yml` manually
 
-### creating release
+### Creating release
 
 - run `pdm release RULE` to release a new version where RULE determines which part of
   the version to update and is one of `major`, `minor`, `patch`.
 
-### container workflow
+### Container workflow
 
 - build image with `make image`
 - run directly using docker `make run`
 - start with docker compose `make start`
 
-## commands
+## Commands
 
 - run `pdm run {command} --help` to print instructions
 - run `pdm run {command} --debug` for interactive debugging
 
-### backend
+### Backend
 
 - `backend` starts the backend service